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CcUC02G018370 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGCCTTCCACTTGGTTTTCTATTCTCTTCATTGCTTTCTTATTATTCCCCATACCCATTTTCTCGAGACGCATTTCTCAACAAAACTCAAGTATGTCACTCCTACTCTTTTTTCGTGAAGCGGTTAAAATCACTTTTGTTATGTTCATAATCATTTTGAAACATGCTGGATTTCTATGCCTAGGTCATGGCCACCACCGCAAGGTAGCAACAGCAACCACTGGCAAAGCGGCAATGGTGGTGAAAGAGAAGTTGTACTGGTTGGAAAAGAAGGTTGCGATGGGGAGAAAAGGGTCGAAGACGGTTGAAGTAGCGGGGTCGAGCTTGCCGGATTGTTCACATGCGTGTGGCTCATGTTCGCCGTGTAGATTAGTGATGATAAGCTTTGTGTGTGCTTCACTACAAGAGGCTGAAACATGTCCAATGGCTTATAGATGCATGTGTAATAACAAGTCCTATCCTGCTCCTTGA ATGAAGCCTTCCACTTGGTTTTCTATTCTCTTCATTGCTTTCTTATTATTCCCCATACCCATTTTCTCGAGACGCATTTCTCAACAAAACTCAAGTCATGGCCACCACCGCAAGGTAGCAACAGCAACCACTGGCAAAGCGGCAATGGTGGTGAAAGAGAAGTTGTACTGGTTGGAAAAGAAGGTTGCGATGGGGAGAAAAGGGTCGAAGACGGTTGAAGTAGCGGGGTCGAGCTTGCCGGATTGTTCACATGCGTGTGGCTCATGTTCGCCGTGTAGATTAGTGATGATAAGCTTTGTGTGTGCTTCACTACAAGAGGCTGAAACATGTCCAATGGCTTATAGATGCATGTGTAATAACAAGTCCTATCCTGCTCCTTGA ATGAAGCCTTCCACTTGGTTTTCTATTCTCTTCATTGCTTTCTTATTATTCCCCATACCCATTTTCTCGAGACGCATTTCTCAACAAAACTCAAGTCATGGCCACCACCGCAAGGTAGCAACAGCAACCACTGGCAAAGCGGCAATGGTGGTGAAAGAGAAGTTGTACTGGTTGGAAAAGAAGGTTGCGATGGGGAGAAAAGGGTCGAAGACGGTTGAAGTAGCGGGGTCGAGCTTGCCGGATTGTTCACATGCGTGTGGCTCATGTTCGCCGTGTAGATTAGTGATGATAAGCTTTGTGTGTGCTTCACTACAAGAGGCTGAAACATGTCCAATGGCTTATAGATGCATGTGTAATAACAAGTCCTATCCTGCTCCTTGA MKPSTWFSILFIAFLLFPIPIFSRRISQQNSSHGHHRKVATATTGKAAMVVKEKLYWLEKKVAMGRKGSKTVEVAGSSLPDCSHACGSCSPCRLVMISFVCASLQEAETCPMAYRCMCNNKSYPAP Homology
BLAST of CcUC02G018370 vs. NCBI nr
Match: XP_038888568.1 (protein EPIDERMAL PATTERNING FACTOR 1 [Benincasa hispida]) HSP 1 Score: 206.1 bits (523), Expect = 1.8e-49 Identity = 102/126 (80.95%), Postives = 106/126 (84.13%), Query Frame = 0
BLAST of CcUC02G018370 vs. NCBI nr
Match: XP_004136818.1 (protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis sativus] >KGN43602.1 hypothetical protein Csa_020445 [Cucumis sativus]) HSP 1 Score: 200.7 bits (509), Expect = 7.6e-48 Identity = 103/127 (81.10%), Postives = 110/127 (86.61%), Query Frame = 0
BLAST of CcUC02G018370 vs. NCBI nr
Match: XP_008455333.1 (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis melo]) HSP 1 Score: 189.5 bits (480), Expect = 1.8e-44 Identity = 100/127 (78.74%), Postives = 107/127 (84.25%), Query Frame = 0
BLAST of CcUC02G018370 vs. NCBI nr
Match: KAG6572355.1 (Protein EPIDERMAL PATTERNING FACTOR 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 179.9 bits (455), Expect = 1.4e-41 Identity = 91/126 (72.22%), Postives = 97/126 (76.98%), Query Frame = 0
BLAST of CcUC02G018370 vs. NCBI nr
Match: XP_022930814.1 (uncharacterized protein LOC111437184 [Cucurbita moschata] >XP_023531684.1 uncharacterized protein LOC111793854 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 179.1 bits (453), Expect = 2.4e-41 Identity = 94/130 (72.31%), Postives = 101/130 (77.69%), Query Frame = 0
BLAST of CcUC02G018370 vs. ExPASy Swiss-Prot
Match: Q8S8I4 (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE=1 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 5.5e-25 Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 0
BLAST of CcUC02G018370 vs. ExPASy Swiss-Prot
Match: Q8LC53 (Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE=1 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10 Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 0
BLAST of CcUC02G018370 vs. ExPASy Swiss-Prot
Match: C4B8C5 (EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EPFL7 PE=1 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.7e-10 Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 0
BLAST of CcUC02G018370 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 4.9e-05 Identity = 37/124 (29.84%), Postives = 57/124 (45.97%), Query Frame = 0
BLAST of CcUC02G018370 vs. ExPASy TrEMBL
Match: A0A0A0K5P8 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G047370 PE=3 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 3.7e-48 Identity = 103/127 (81.10%), Postives = 110/127 (86.61%), Query Frame = 0
BLAST of CcUC02G018370 vs. ExPASy TrEMBL
Match: A0A1S3C0N9 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103495522 PE=3 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 8.5e-45 Identity = 100/127 (78.74%), Postives = 107/127 (84.25%), Query Frame = 0
BLAST of CcUC02G018370 vs. ExPASy TrEMBL
Match: A0A6J1ESJ9 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111437184 PE=3 SV=1) HSP 1 Score: 179.1 bits (453), Expect = 1.2e-41 Identity = 94/130 (72.31%), Postives = 101/130 (77.69%), Query Frame = 0
BLAST of CcUC02G018370 vs. ExPASy TrEMBL
Match: A0A6J1JEL1 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111486204 PE=3 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 1.7e-40 Identity = 89/126 (70.63%), Postives = 97/126 (76.98%), Query Frame = 0
BLAST of CcUC02G018370 vs. ExPASy TrEMBL
Match: A0A6J1GMI9 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111455631 PE=3 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 8.5e-37 Identity = 85/126 (67.46%), Postives = 90/126 (71.43%), Query Frame = 0
BLAST of CcUC02G018370 vs. TAIR 10
Match: AT2G20875.1 (epidermal patterning factor 1 ) HSP 1 Score: 115.2 bits (287), Expect = 3.9e-26 Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 0
BLAST of CcUC02G018370 vs. TAIR 10
Match: AT1G34245.1 (Putative membrane lipoprotein ) HSP 1 Score: 67.4 bits (163), Expect = 9.4e-12 Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 0
BLAST of CcUC02G018370 vs. TAIR 10
Match: AT1G71866.1 (LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Putative membrane lipoprotein (TAIR:AT1G34245.1). ) HSP 1 Score: 67.0 bits (162), Expect = 1.2e-11 Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 0
BLAST of CcUC02G018370 vs. TAIR 10
Match: AT2G30370.2 (allergen-related ) HSP 1 Score: 48.9 bits (115), Expect = 3.5e-06 Identity = 37/124 (29.84%), Postives = 57/124 (45.97%), Query Frame = 0
BLAST of CcUC02G018370 vs. TAIR 10
Match: AT2G30370.1 (allergen-related ) HSP 1 Score: 45.8 bits (107), Expect = 2.9e-05 Identity = 29/81 (35.80%), Postives = 42/81 (51.85%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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