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CcUC02G017810 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCCAAGTCGAAGCGTGATAGGCCAGGTCCTTTTTGATCTATTTTTTTTGCTCATATCTATGAATCTGTTGCGTTATTTTGTGTTTTTGTTGGTCTGTTCTATCTGCCTTGTTTTCCATGCTAAAAGAAATAGATTTTAGCTTATCTGGTTATTGTGCTGTAATATGAAAATCTGTTACAGGAACCTAACACAGTACAAGGAGAGATTGGTTAAGCTATATTATGGGAAATAGTCACTAGAAAAGTTGTAGTTGTAAGATAGAAGGTGTTTTTTTTTTTTTTTTTTGTTGGGTGTATTCTTGCCTCTTATGAGGGGAACTTCATTCTGAAGTGCTTAGTTCACTAGGTTGGCTGCAAGTCGACCAGCATTTGTGTTGTTACATTGCATCATGTTATAGGACTTGAATGTAAAGATATATGAGGCTCTTTAATATGCACACAAAACCAGTTCAGCACCATGACACTGTCAAGTGTCTTATATTTAGTTCAGTATACCTTTTCTTATAGCTATTTGAGCTGCATATTAAAGAAATCAAATAGGATAGATTCCATAAATATTAGCATCTTTCTTGCTCGATTTGAGCTGCATATTATTCTTCCATGGCTCTTCAAAGTTCCATTGAAGTTATTTGATGTGTTACTTGAGCAAGTACTTTAAGAGTGAGGAATTTGTAGAGGCATCCTTGTAGGAGTAGGTCATTTGCTACCCACTCCTTGAACGAAGGTTATTACAAATCTGATGCTCTGTGAGCCTCAAGCTTGCTTTCCTTGATGGTAGGCATGGCTTTAGTGTGCCCTAGAAGATAGTTTGTCATCGAGTTTGAGGGAAAAATCAATTTAGTATAGGTGTTGCCAGGAGGTGGCTGAGGTGAAAGTTTCTGTGTATGTACAAAATGTAGAGTTGCTTACTACATATGGAGCATGATGTCTAAAGTTACAGCGTTTACTGCGTGAGACCAATTTCTAGAAAAATAAATTTAGTAGGCTGATTAATGTCGTTAACAGAATCCAAATAACAGTAATCTTAAGAGAATTTAATGACTTGCTTTAAGAGTAGAAAGGTGCTAAATTTTGTTCTTTTAATTCAAGGTTCTTGTTGAATATGGGTTAATGGGTCAGTTATATTATGGGTTAATTTTTTTGAGGCAGTTTAAGAAGTTAAATGACTTGTGGTGGTAGTATTCAGTGTCAAACTTGTGTGGTTTTTAACTTAAAAGAAAGAGGAAAAATATGAACTTTTAGTGTGTTGCAGATTAGTGTCTTGACTAATTGTTCCGTGGGATAAATGCAGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACACAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTACAACTCAATTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTTAAGGAACTCAGGGAGCAGCTGAAGTCATCTAGCAGGCAAGTTGTATTTCCTGGCTTCTGTATTATTTATTTGCTACATCATTTCAAATATTGA ATGCCCAAGTCGAAGCGTGATAGGCCAGGTCCGAACCTAACACAGTACAAGGAGAGATTGTTCAAGGTTCTTGTTGAATATGGGTTAATGGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACACAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTACAACTCAATTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTTAAGGAACTCAGGGAGCAGCTGAAGTCATCTAGCAGGCAAGTTGTATTTCCTGGCTTCTGTATTATTTATTTGCTACATCATTTCAAATATTGA ATGCCCAAGTCGAAGCGTGATAGGCCAGGTCCGAACCTAACACAGTACAAGGAGAGATTGTTCAAGGTTCTTGTTGAATATGGGTTAATGGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACACAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTACAACTCAATTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTTAAGGAACTCAGGGAGCAGCTGAAGTCATCTAGCAGGCAAGTTGTATTTCCTGGCTTCTGTATTATTTATTTGCTACATCATTTCAAATATTGA MPKSKRDRPGPNLTQYKERLFKVLVEYGLMVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREQLKSSSRQVVFPGFCIIYLLHHFKY Homology
BLAST of CcUC02G017810 vs. NCBI nr
Match: XP_022933518.1 (mRNA turnover protein 4 homolog [Cucurbita moschata] >KAG6588508.1 mRNA turnover protein 4-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 114.0 bits (284), Expect = 7.8e-22 Identity = 64/86 (74.42%), Postives = 65/86 (75.58%), Query Frame = 0
BLAST of CcUC02G017810 vs. NCBI nr
Match: XP_022969955.1 (mRNA turnover protein 4 homolog [Cucurbita maxima]) HSP 1 Score: 114.0 bits (284), Expect = 7.8e-22 Identity = 64/86 (74.42%), Postives = 65/86 (75.58%), Query Frame = 0
BLAST of CcUC02G017810 vs. NCBI nr
Match: XP_023529350.1 (mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 114.0 bits (284), Expect = 7.8e-22 Identity = 64/86 (74.42%), Postives = 65/86 (75.58%), Query Frame = 0
BLAST of CcUC02G017810 vs. NCBI nr
Match: XP_038902849.1 (mRNA turnover protein 4 homolog [Benincasa hispida]) HSP 1 Score: 113.6 bits (283), Expect = 1.0e-21 Identity = 64/86 (74.42%), Postives = 65/86 (75.58%), Query Frame = 0
BLAST of CcUC02G017810 vs. NCBI nr
Match: XP_022157470.1 (mRNA turnover protein 4 homolog [Momordica charantia]) HSP 1 Score: 112.8 bits (281), Expect = 1.7e-21 Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 0
BLAST of CcUC02G017810 vs. ExPASy Swiss-Prot
Match: A4FV84 (mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 5.6e-07 Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 0
BLAST of CcUC02G017810 vs. ExPASy Swiss-Prot
Match: Q9UKD2 (mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2) HSP 1 Score: 55.1 bits (131), Expect = 5.6e-07 Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 0
BLAST of CcUC02G017810 vs. ExPASy Swiss-Prot
Match: Q9D0I8 (mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 5.6e-07 Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 0
BLAST of CcUC02G017810 vs. ExPASy Swiss-Prot
Match: Q7S302 (Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mrt4 PE=3 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 2.0e-04 Identity = 20/49 (40.82%), Postives = 34/49 (69.39%), Query Frame = 0
BLAST of CcUC02G017810 vs. ExPASy Swiss-Prot
Match: Q6FJ04 (Ribosome assembly factor mrt4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=MRT4 PE=3 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 2.6e-04 Identity = 20/50 (40.00%), Postives = 37/50 (74.00%), Query Frame = 0
BLAST of CcUC02G017810 vs. ExPASy TrEMBL
Match: A0A6J1I1E2 (Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 3.8e-22 Identity = 64/86 (74.42%), Postives = 65/86 (75.58%), Query Frame = 0
BLAST of CcUC02G017810 vs. ExPASy TrEMBL
Match: A0A6J1F4Z2 (Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 3.8e-22 Identity = 64/86 (74.42%), Postives = 65/86 (75.58%), Query Frame = 0
BLAST of CcUC02G017810 vs. ExPASy TrEMBL
Match: A0A6J1DT71 (Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=3 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 8.4e-22 Identity = 63/86 (73.26%), Postives = 65/86 (75.58%), Query Frame = 0
BLAST of CcUC02G017810 vs. ExPASy TrEMBL
Match: A0A0A0KNA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G453720 PE=3 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 1.5e-18 Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 0
BLAST of CcUC02G017810 vs. ExPASy TrEMBL
Match: A0A6A4KVW6 (Ribosome assembly factor mrt4 (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_21194 PE=3 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 8.1e-17 Identity = 53/86 (61.63%), Postives = 61/86 (70.93%), Query Frame = 0
BLAST of CcUC02G017810 vs. TAIR 10
Match: AT1G25260.1 (Ribosomal protein L10 family protein ) HSP 1 Score: 82.8 bits (203), Expect = 1.8e-16 Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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