CcUC02G017520 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC02G017520
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr02: 412653 .. 416455 (+)
RNA-Seq ExpressionCcUC02G017520
SyntenyCcUC02G017520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGAGAGGAAAGATGAGTGAGAGAGCAGATAGGCAAAACTCTAAAGAGAAAGACGGCGGCAAAATGAAGTCCGGCGACCGGAGCTTGTATCCAGGGCCTTTCTTTAGTCCTCAAACTCCGGCGTCGAGGAGCGAACTCAGAAACAACTTCTTCAAAACACTTACAATCGGCATCGGTGGCAGCTCCTCCTCCACCACCAACAAGAACAGCTGATCTACCTCTGTTTTTCTCTCTCTCTCTCTCTCTGTTTTGCTTTTGATGTGCTTTAGTTTCATGTTTCATCTACAAATAATTCTAAATTCTACCTTCCTCTCCTAATCTCCTTGTAAACGAGAAGTATATATTTTCATATGCTTTCCTTTATTATCTCTTTCAAATGGGAAATTTGCACAACCGAGCGACTTTCAAGGCCCAAGATGCCAAATCACCGCATCTTTTACAAAATGTCAAATGTCAAATGATCTTCTATTAACGTCGCAAACGAATGGAGTTATAAATTTGGCGATTTCCTTTTCTTCTTTGGCCCCAACACAACTTTCTTCTTTTTTTTTTTTTTTTCCCGACGAATTTCCACCCTTCTGCTCAACGATCAAGCACAGCCTCCATTCCATATTTCCAACGACTATCATCCATTCGATTCCTTAGCGAAATCGGGCCGAAATCGACAACCCTTTTGGCTCTACAGTAGATGTTCGACGAGAGCAAGAATGACTCTGTGATTCTTGTCTATGAACAAGAATAAATAGGTTTTTCTTTTCGTCATTTCCTTTTCTTCACTTGCTCCGACACCGATTTCCTTCTTTTTCTCTAGCAAATTTCCACCCTTCTGCTTGACGATCGAGCACGGCCTCCATTCCATGGTTTCAATGACTATCATCCATTCGATTCCTCAGTGAAATCGGGCCGAAACCGACGATCCTTCTCCGATCTCGGTGGATGTTTGACGAGAGCAAGAATGGCTCGATGATGGATGTTTGACGGGATCCGATGAACGAAGAATAAATAAGTTTTTTACCGGACGACAAGAGAGAGCGAGAATGGATCGTCACTAAGAACAAGAGTGAGATGGGTTTTTCTTTGGGAGTTTATTTTAGTAATTTCAGTAAAGAGCCATTTGACATTTTTTATGAAAATTCAGGTCATTTTGGGTCATCCGTACAAATTTTTTCATTCAAATCTCTCTCAAAATAAAGTATGGTTATTCTCACTTATGTTAAGATTTGAGGTTTGAATTCATATTTATTGATTTTTATTTGGGCAAACTACAAAAATTATCTCTCAACTAAGTTGATAGTTGTAATTAGACTCTCAAACTTTCATTTATAAAAATTGGGCCCCTACAATTTTTCAAGTGTTAAAATTGGACTCTCAAACTTATAATAATTATAAAAATTAAACTTACCAATGTTAAAATTGAGCTCTTAGACTTATATAACTACAAATGTTTGTTAAAATTGAGCTCTTAGACTTATATAACTACAAATGTTTGTTAAAATTGAGCTCTTAGACTTATATAACTACAAATGTTACAGTGTATAAAATTATGACTTATATAACTACAAATGTTACAGTGTATATAATTATAAATTTTGAGGATTTAAGTTTTAAAATTAAAAGTTTAAGAGTTTAATTGGCACGATAGTTAAGATTTGTATTTTTTTAATTATTATTTTCTTTTCTAAAACAGGATTTTTATATAAAGATTTAAAAATCTGTTTTGGAGCATGTGGGGTAGTTTTGTTGGATAATTTCTGGAACCAAATGACTTGTTACAGCCTTTACTCACATAATTTTAATTAAACAAAAGTTAAATTACACAAAAGTAGGAGTTTATATCCAAATATTTATGGTTTGAGTATAAAGTTAGGAGACACCGGCAACTGTTGAAGCTTGACAAAAGAAAAGGCCATCTTTTAACGTTAGTGTCAAATAAAAATATGAGAGAATATGTTTGAATTGAGAAGTGGTATAGAACATGATTATCCAAATTGCTACTTTTGATGTTTACCTTAATGATATATATATATTTTTTTTAAAAGTCCAATTGTACCTAAAAGAAACAATATTGGACTTTATAACACCATTTTTATGATTAATATATATTTTTTTTATTTATCTTTCAAAATTATCAAAATAGATTCAAAATGTTAGAAATAAGAGAAAACTGTCATAAAAACAACTAATTCACTCCCTTTACCTATATTTTAAATCTAAATGGAGATAAAAATGCCAAGATCTCAATCTTACGAAAGTGTAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAACTCATAAAATCTCAATATTGATAGATATATTTTTTTAAAAATAAAAAATATATGTCTACGATAATAAATAAAAATTATATATACTTTTTTAAATAAATTGAAGTAATTGTTATAGTCATGGTATAAATTTTCAAAAGGCATTTTTTTTTTTTAAGAATTAGCTATGTGAGCTTCCTTCGAATTTTTTCATTTTTATGATCATGATTACACGTCAAAATTGTATAGTTTCACCTTCCAATATCATTTCCAACCAAGGTTGAAAAAATATACCAATATTATATTTTTGTCAAAATATCACCAAAATATCCATAAAATCAAGTAATCGATAGAGTTATTGGTGGGTTACATCGTTTTTCTTGAAAATTCATGATTTATCGATGATATTGTCATTTTATCGAAGTTATATCGTTTTACCGGCGGTATACTGTTTTATAGATATATATTGTCTTCTCTATATGTCTTTTTTTTTTTTTAATCTTTTTTCAATATTTAGCTTTTTCAATGTACTACTTTTTTCAATTTTCAACTTTATTATCAAGATTCTGAATTTGATATTCCAAGGTCATCTTTTTAGTATTGGATATGTACATTCTATGACAAATTAGTGCGTATTCGTACGTGTGTCTTTTACTAACAATAATTTAATAAGACGTCAACTCAGTATTTATTTAACTTTCTTTCATACAAATGTAGGATGTGAAAATTTAAACCTCTCACTCTAAAGAAAAAATTAGATAACATCAATTATCGTTCATATTATAGTTCATATTCATTATGTTCTCTTTTTTAAAAAATTATATTTTATAGTGATTATTCGTGCAACACATCATTCCATTTTCTTCTCTATTTTTGAGTTGTATATGCAGGGTAAGAGATTCCAAACCTCTAATCAAGATTTATTTGTTTACTTTATATCGATGTTACATGTCATTCCATTAATGAAATTTGCATCTTTATGTAGAACAAAGAATTTGGACCGGACTTTTTCAAAAAGAGGCATTAAAAGTCAAGTGGGTGAGTTGCTTGTTGCAATAGTGGTGGCCAGGTTCATGTTTATCTCATTTTTGTCTGTCAAAATTTGGATGGTTCTAATTGTACGAGAAAGTGTGGGATAATGTTTCTTTTTTTAAATAATTTTGTTCTTTGGATGATCTAAAATTTTTTCTTTCCATTTTTTCTATTTTAAAAAGAAATTTAAAAACGTTTGAG

mRNA sequence

GGAGAGAGGAAAGATGAGTGAGAGAGCAGATAGGCAAAACTCTAAAGAGAAAGACGGCGGCAAAATGAAGTCCGGCGACCGGAGCTTGTATCCAGGGCCTTTCTTTAGTCCTCAAACTCCGGCGTCGAGGAGCGAACTCAGAAACAACTTCTTCAAAACACTTACAATCGGCATCGAACAAAGAATTTGGACCGGACTTTTTCAAAAAGAGGCATTAAAAGTCAAGTGGGTGAGTTGCTTGTTGCAATAGTGGTGGCCAGGTTCATGTTTATCTCATTTTTGTCTGTCAAAATTTGGATGGTTCTAATTGTACGAGAAAGTGTGGGATAATGTTTCTTTTTTTAAATAATTTTGTTCTTTGGATGATCTAAAATTTTTTCTTTCCATTTTTTCTATTTTAAAAAGAAATTTAAAAACGTTTGAG

Coding sequence (CDS)

ATGAGTGAGAGAGCAGATAGGCAAAACTCTAAAGAGAAAGACGGCGGCAAAATGAAGTCCGGCGACCGGAGCTTGTATCCAGGGCCTTTCTTTAGTCCTCAAACTCCGGCGTCGAGGAGCGAACTCAGAAACAACTTCTTCAAAACACTTACAATCGGCATCGAACAAAGAATTTGGACCGGACTTTTTCAAAAAGAGGCATTAAAAGTCAAGTGGGTGAGTTGCTTGTTGCAATAG

Protein sequence

MSERADRQNSKEKDGGKMKSGDRSLYPGPFFSPQTPASRSELRNNFFKTLTIGIEQRIWTGLFQKEALKVKWVSCLLQ
Homology
[Close]
BLAST of CcUC02G017520 vs. NCBI nr
Match: KAE8651988.1 (hypothetical protein Csa_016955 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 3.2e-04
Identity = 32/61 (52.46%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 1  MSERADRQNSKEKDGGKMKSGDR-------SLYPGPFFSPQTPASRSELRNNFFKTLTIG 55
          MSER+D+Q SK+KDG KMKSG         + YPG  +S Q PASRS L+N F  T   G
Sbjct: 6  MSERSDKQKSKDKDGEKMKSGAERKSKPCTTPYPGYSYSSQYPASRSALKNQFLSTGNFG 65

The following BLAST results are available for this feature:
BLAST of CcUC02G017520 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651988.13.2e-0452.46hypothetical protein Csa_016955 [Cucumis sativus][more]
BLAST of CcUC02G017520 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC02G017520 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC02G017520 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC02G017520.1CcUC02G017520.1mRNA