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CcUC02G017090 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTAATGGCCACTCTCACCTCTTCCATGCAGGCCAATCTCCTTTCCCATCACTCCTTATCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCCATTTCTTTCTTTCCAGCTTCCTTCTCTCTTCACTTCTCTGCGCTCAAAGTTCATGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTGGAACCATTGAGACTCCATCCCGCAGCCGTCATGCCTCAAACTCTTTCAATGTTCGGATGTCCTGGGACGGCCACCTCTCCTCTGTCAAATTAATTGTCCAAGGGAAAAATTTGGAGGTATTTCATTTAGCTTCATCTTTGCTATTGTTTCTCATGCAATGCGACTTCTTCTTTTCACTATCTTGAATTGTTAATTATTCCCATGTTTGATTCAGTAATTACTATCAAATGAATCCACATAACCTCTACCTTTTTCATACCCCATTCTCTATGCTATTCCAATCACCATATCCCTTTACTCAAACCCTACCCTTGTATTTGCTGACTTCTCCATTTCCACTACATTTAGTTTACAAACCCTAAACTCTGCCTCATTTCTTTAAATATTTTCCGTATCAACATTCGTGGCCCTTCTCCACTCTTCTTTTTACTCTGCACACCTCTTTGAAGTGAACGCATCGCATAAGGAATTCACTATCATTTTCAAAAACTCCTCCCTCTATCTCCTAATCTCTCAGCGAATTTTGATATCGATATTCTATATCTTCGCTTATTGCAGCTAGAAGATTGTTCCTTGGTCAAAGAATCAGGGTGCATTCACTCTCTTCAATATCAGCATCTAAACCAAATTTATTCTTCTCTACATTCTTATCAAACACAACCATTTTTCCTTCATAATCATTCCGTTCCAGGAAACGCACGATGGCTACTTCATACTTCCCAATTTCAACCGTTATCTGCTTGAAGGAATCCTTTGTAAAATTGGATCAAGATATCTGTAGGCCCCTGTTTCTTTCACTTAATCCAAGACACACAACTCAAGCTTTATCATCCTGCTTAGATCTTGAACATGATACACACATCAAAAGCAGTCAACAAATGTAATAAGAGACTGCTGCCTCTAAATTAAATTGAAGTTGGCCCTATGTAAGATACCTAGTTATGGAAATATTAGAGTTATTAGTATGGTTATTAGAAGGGGCATATTAGTAATTAGTTAGTAAGTTTGTTAGAGCTTTTAGTTATAAATAGAGAGAGTTGATTGGGAGCAAGGTGTGGATCATTTTGGTAGTAATTTCCATTGTGGGAATTTCAGAGGGTGTAGCCCTCTCGAAAGGCTATGATATTGTAGTTTCTTCATTCATCTTGCAATATAATTCTATCTTTTTGTGTTTGTTGTTCTTCAATGTTCATGTTAGCTGATAACCCAACTACACCCTAATCTAGATGATACGGATTTGACACCAAATATTAGGAATAAGCTCTTCAAAGAAATAAAAGCGGACGAAATATACTGTTAAAAACATGCTGGAAATGATAACAAAGTTTAATAAGGTGGTCATCATACTGAACTTACCTACTAGATGCAGATAAAGAAATTACCTACTAACACTTATAAACAAGCTACCTTAGTTGTAGAAACTCTGCTGCTGCAAAATGACAAGACCACCTACTAACTAGAAATTCTAACATGTACTTCTAGAAGTTGTTCGAGTTTTAGTTACCCAATTTATGGTATCTCAATGTTTCAAATGTCAAATAATGAGTGGATTGAGGGTTTTGACTTTAGTTTGGGAGAAGGGATGTTTGTGTTTGGAGTCCTAACCCATTGGAGGGTTCTCTTGTACGTCGTTCTTTAGGATTTTATTGGATCCTTCTCCTATTGTTGAGTCGGTCTTTGATGTTTTATGGAGGATTAAGATTCCAAAGAAAGTTAAGTTATTCTCCTAGCAAGTTTTGCTCGGTCGTGTGAATACGACGGATACGATTTTGAGAAAGATGTCTTCGTTAATGGGTCTATTTTGTTGTATTTTTTGTCGGAAGACGGAGGAAACCTAGATCACCTTCTTTGGAGTGTCAGTTTGCGAGATTTGTTTGGAACGGTTTCTTGCAGGAGTTTGATTTTAATCTTGCTCGCCGGTTGATAATCGGGGAGTTCCTTCTCCATCCGTCTTTCAAAGAGAAAGGTCATTTTCTTTGATTTGTGGGGGTGTGTGTTTTGTGGGATCTTTGGGATCTTTGGGAGGAGAGAAACAATAGAGTGTTTGGGGGTGTGGGAGGGACCCTAGCAAGGTTTGGTCTTTATTGAGGTTTCATGTTTCTCTTTGGGCTTTGGTTTTGAAGGCTTTTTGTTATCACTCTCTAGTCAATATCTTACCTAGATGGAAACACTTTCTTTAGTTGGAGATTTTTTTTTTTTTTGTATGCCCTTGTTTTCTTTCCTTTTTTTCCTCAATGAAAATAGTTGTTTCTGTATTTTTTAAAACAAAATAAAAAAATAAAAAAATAAAAAAATAAAAAATAAAAAATAAAAAATAAAATAAAGAAAAAACATTGAGTTGATTTATGTTTAATTGTGCAAAAAACTAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTTGGGAAGGGTCCAAGGATAAGAAGATGTGAGGTACTCTATTGCTCCTTTATTTTAAATTTATCCATATGAATTGAACCCTCATTCTTTTCCAAAAACATTTGTGTTTATATAGGTTACCTTATTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGTGGCCGACACATGAAAGGATTTGACAGATTGAAAGTACGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTTTCAAGAGGATGGTGGAGAAGTTATTGATGAGGTTATTCTTCCAACCTTTGGGTTTTTACTTTGAGTTCATTTAAGGTGATATTAGCTTATAAAAGCTCATGTATGCCATGCCTTTAATTATTTTCTACATGTCGGAGCTTATTATGAAACTTACTAAACCACATCTTTCCTCACTTAGTTATTGAAAACATTGTTTAGAGAGAGAGAGAGAGAGAACCATCAATTAGTAGTGGGAAAACTCCAGATGCAGTACTCAGATTAGTTGAACCATGTGCAATAAGTTACTCCTCGCATAGGTGGGAAGAATGGAAAGAAATGCATTCTCAATCTTGATTACCCCCCTCTAATGTGCTATTTTCAACTGAGTTCAGCTCAAAGTCCTATTTTTATTTACATTATAGGATTAATAAGTCAATTCTTTTATTTCACAACACGACATCTTAGATAAACACGAAAAAAACGGAAGTTGGACCTTACAACTGTAAGATAGAGGGCCCCCATAGTTTGTAGGAGTCTGTTATCTGTTATTTCTCACAGAGCTAACATTGTGTTGACTGTTATTTTATTGATCCTTTGCTCCTCATGAGTGTTTTGTGGTCCATTCCAATGTACTTGATCGTTATAGCTTTTGATTTACTTGCTGCTTATTTTGTTTACATCCAATTTTGGTTGGAAGGACTTATGATATTCGTCCTTTTTAGATAACGATCATGTATCATATTCTGGAAGCTCGTGAATGATATGTACACATGATTAAAATATTAATTTTTCCTTTTCATGCTAGCAATTTTCTAATTTGGTATCTCATTGCTCATTTTTATCTTGATTTCAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATTGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGCATTGATTTGATTATTATGATGATCTTGTTTTGTAGGGATTCTTTGCTGTTTATATCGTAGCTTATTGTCTGAATCTTTGGCCCAGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAAAGCTGAGAAATTAGAACCTGTCACAGTTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGATGGGAGTTCACGGAGGAATTTTCATGTTCTAGATATCTTGCCACTGTTACATTCGCTTAAAACTGCAAAACTTCGACTTCAACATGCATCTGAAGGCCTTTCTTGTAGAGAGTATATAGATTTAGATTCGAGGTTATTTGGTGATGAAGACAATATTGGAACAAGAAATCAGTAAAAAGTAAAATGAGATGCAAAAAATATTCTATGGAATGAATGATTCAGCTTGCAGGGGTGTTACCATGAAAATATACTGTTTTCTTTTGTAATAATGGTTTCTTTTCCCCTAGCGTGGCCAGTTCTGTTTATATTGTTGGTAGTTGAATATTGATTCATCTTTCTTCCTTTCCTAAAGAATCCCCCGGTCGCCACATTTTTACTTTATTCATATGTGACATGAATATTCCTTGTCCCTACAACATTGATTAATGCAATAAAAATAGATAACTAGAAGTAATATTTGTTCCATGATGAGGTTGGATAAGAATTAGCATGGGAGTCCAC ATGGTAATGGCCACTCTCACCTCTTCCATGCAGGCCAATCTCCTTTCCCATCACTCCTTATCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCCATTTCTTTCTTTCCAGCTTCCTTCTCTCTTCACTTCTCTGCGCTCAAAGTTCATGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTGGAACCATTGAGACTCCATCCCGCAGCCGTCATGCCTCAAACTCTTTCAATGTTCGGATGTCCTGGGACGGCCACCTCTCCTCTGTCAAATTAATTGTCCAAGGGAAAAATTTGGAGCTAGAAGATTGTTCCTTGGTCAAAGAATCAGGGAAACGCACGATGGCTACTTCATACTTCCCAATTTCAACCGTTATCTGCTTGAAGGAATCCTTTGTAAAATTGGATCAAGATATCTGTAGGCCCCTGTTTCTTTCACTTAATCCAAGACACACAACTCAAGCTTTATCATCCTGCTTAGATCTTGAACATGATACACACATCAAAAGCAGTCAACAAATAAGGGGCATATTAGTAATTATTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTTGGGAAGGGTCCAAGGATAAGAAGATGTGAGGTTACCTTATTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGTGGCCGACACATGAAAGGATTTGACAGATTGAAAGTACGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTTTCAAGAGGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATTGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAAAGCTGAGAAATTAGAACCTGTCACAGTTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGATGGGAGTTCACGGAGGAATTTTCATGTTCTAGATATCTTGCCACTGTTACATTCGCTTAAAACTGCAAAACTTCGACTTCAACATGCATCTGAAGGCCTTTCTTGTAGAGAGTATATAGATTTAGATTCGAGGTTATTTGGTGATGAAGACAATATTGGAACAAGAAATCAGTAAAAAGTAAAATGAGATGCAAAAAATATTCTATGGAATGAATGATTCAGCTTGCAGGGGTGTTACCATGAAAATATACTGTTTTCTTTTGTAATAATGGTTTCTTTTCCCCTAGCGTGGCCAGTTCTGTTTATATTGTTGGTAGTTGAATATTGATTCATCTTTCTTCCTTTCCTAAAGAATCCCCCGGTCGCCACATTTTTACTTTATTCATATGTGACATGAATATTCCTTGTCCCTACAACATTGATTAATGCAATAAAAATAGATAACTAGAAGTAATATTTGTTCCATGATGAGGTTGGATAAGAATTAGCATGGGAGTCCAC ATGGTAATGGCCACTCTCACCTCTTCCATGCAGGCCAATCTCCTTTCCCATCACTCCTTATCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCCATTTCTTTCTTTCCAGCTTCCTTCTCTCTTCACTTCTCTGCGCTCAAAGTTCATGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTGGAACCATTGAGACTCCATCCCGCAGCCGTCATGCCTCAAACTCTTTCAATGTTCGGATGTCCTGGGACGGCCACCTCTCCTCTGTCAAATTAATTGTCCAAGGGAAAAATTTGGAGCTAGAAGATTGTTCCTTGGTCAAAGAATCAGGGAAACGCACGATGGCTACTTCATACTTCCCAATTTCAACCGTTATCTGCTTGAAGGAATCCTTTGTAAAATTGGATCAAGATATCTGTAGGCCCCTGTTTCTTTCACTTAATCCAAGACACACAACTCAAGCTTTATCATCCTGCTTAGATCTTGAACATGATACACACATCAAAAGCAGTCAACAAATAAGGGGCATATTAGTAATTATTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTTGGGAAGGGTCCAAGGATAAGAAGATGTGAGGTTACCTTATTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGTGGCCGACACATGAAAGGATTTGACAGATTGAAAGTACGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTTTCAAGAGGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATTGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAAAGCTGAGAAATTAGAACCTGTCACAGTTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGA MVMATLTSSMQANLLSHHSLSSSTSSSSSSSISFFPASFSLHFSALKVHALSSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELEDCSLVKESGKRTMATSYFPISTVICLKESFVKLDQDICRPLFLSLNPRHTTQALSSCLDLEHDTHIKSSQQIRGILVIIKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKAEKLEPVTVEAAREPSLAE Homology
BLAST of CcUC02G017090 vs. NCBI nr
Match: XP_004147328.1 (ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus] >KAE8651998.1 hypothetical protein Csa_016934 [Cucumis sativus]) HSP 1 Score: 506.1 bits (1302), Expect = 2.6e-139 Identity = 284/388 (73.20%), Postives = 297/388 (76.55%), Query Frame = 0
BLAST of CcUC02G017090 vs. NCBI nr
Match: XP_008460813.1 (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo] >TYK02023.1 ribosome-binding factor PSRP1 [Cucumis melo var. makuwa]) HSP 1 Score: 505.4 bits (1300), Expect = 4.5e-139 Identity = 284/388 (73.20%), Postives = 296/388 (76.29%), Query Frame = 0
BLAST of CcUC02G017090 vs. NCBI nr
Match: XP_038900446.1 (ribosome-binding factor PSRP1, chloroplastic [Benincasa hispida]) HSP 1 Score: 487.6 bits (1254), Expect = 9.7e-134 Identity = 282/390 (72.31%), Postives = 293/390 (75.13%), Query Frame = 0
BLAST of CcUC02G017090 vs. NCBI nr
Match: XP_022922607.1 (ribosome-binding factor PSRP1, chloroplastic [Cucurbita moschata]) HSP 1 Score: 459.5 bits (1181), Expect = 2.8e-125 Identity = 266/393 (67.68%), Postives = 282/393 (71.76%), Query Frame = 0
BLAST of CcUC02G017090 vs. NCBI nr
Match: XP_022141073.1 (ribosome-binding factor PSRP1, chloroplastic [Momordica charantia]) HSP 1 Score: 459.5 bits (1181), Expect = 2.8e-125 Identity = 269/394 (68.27%), Postives = 281/394 (71.32%), Query Frame = 0
BLAST of CcUC02G017090 vs. ExPASy Swiss-Prot
Match: P19954 (Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP1 PE=1 SV=2) HSP 1 Score: 292.4 bits (747), Expect = 7.8e-78 Identity = 192/400 (48.00%), Postives = 238/400 (59.50%), Query Frame = 0
BLAST of CcUC02G017090 vs. ExPASy Swiss-Prot
Match: P74518 (Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=hpf PE=3 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 2.3e-29 Identity = 82/189 (43.39%), Postives = 118/189 (62.43%), Query Frame = 0
BLAST of CcUC02G017090 vs. ExPASy Swiss-Prot
Match: P47908 (Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=hpf PE=2 SV=2) HSP 1 Score: 122.1 bits (305), Expect = 1.4e-26 Identity = 73/184 (39.67%), Postives = 111/184 (60.33%), Query Frame = 0
BLAST of CcUC02G017090 vs. ExPASy Swiss-Prot
Match: Q9RVE7 (Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=hpf PE=1 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 1.7e-16 Identity = 59/185 (31.89%), Postives = 104/185 (56.22%), Query Frame = 0
BLAST of CcUC02G017090 vs. ExPASy Swiss-Prot
Match: Q49VV1 (Ribosome hibernation promotion factor OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=hpf PE=3 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 3.8e-16 Identity = 61/183 (33.33%), Postives = 104/183 (56.83%), Query Frame = 0
BLAST of CcUC02G017090 vs. ExPASy TrEMBL
Match: A0A5D3BQR1 (Ribosome-binding factor PSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00050 PE=3 SV=1) HSP 1 Score: 505.4 bits (1300), Expect = 2.2e-139 Identity = 284/388 (73.20%), Postives = 296/388 (76.29%), Query Frame = 0
BLAST of CcUC02G017090 vs. ExPASy TrEMBL
Match: A0A1S3CCT7 (ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499579 PE=3 SV=1) HSP 1 Score: 505.4 bits (1300), Expect = 2.2e-139 Identity = 284/388 (73.20%), Postives = 296/388 (76.29%), Query Frame = 0
BLAST of CcUC02G017090 vs. ExPASy TrEMBL
Match: A0A6J1CJG5 (ribosome-binding factor PSRP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011561 PE=3 SV=1) HSP 1 Score: 459.5 bits (1181), Expect = 1.4e-125 Identity = 269/394 (68.27%), Postives = 281/394 (71.32%), Query Frame = 0
BLAST of CcUC02G017090 vs. ExPASy TrEMBL
Match: A0A6J1E3S3 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430564 PE=3 SV=1) HSP 1 Score: 459.5 bits (1181), Expect = 1.4e-125 Identity = 266/393 (67.68%), Postives = 282/393 (71.76%), Query Frame = 0
BLAST of CcUC02G017090 vs. ExPASy TrEMBL
Match: A0A6J1J523 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482691 PE=3 SV=1) HSP 1 Score: 443.4 bits (1139), Expect = 1.0e-120 Identity = 254/375 (67.73%), Postives = 269/375 (71.73%), Query Frame = 0
BLAST of CcUC02G017090 vs. TAIR 10
Match: AT5G24490.1 (30S ribosomal protein, putative ) HSP 1 Score: 319.7 bits (818), Expect = 3.3e-87 Identity = 184/324 (56.79%), Postives = 210/324 (64.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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