CcUC01G016760 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC01G016760
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Nascent polypeptide-associated complex subunit beta
Location	CicolChr01: 29430587 .. 29433187 (+)
RNA-Seq Expression	CcUC01G016760
Synteny	CcUC01G016760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGATTTTGGTGCATCAGTTCATAGCTGCTTTAGCAGCCTATAATTATTATATGGAGGGAATGGGCATAACAATCTGTTAGCGCCGTCCGGGAGTCTACCTTTCTTCCGCGAGCCTCAGTCTTATCCCCCACCTCCAAAACCCTAGCCCAAAGGTAATTCCCTCCTTCCTCTTCGCTCCATCATCTTTAATCTCTTCTCCCGCTTGTTTCTTAGATTCTTTTTTGTCGGCACTTTTTCAATCTTTATTCATGGTTGGGCTTGTAAGTTTACACGAAGTTTTTATAGATTGGATTCTCTATCTTTTTGCACGCTAGGGTTTTCCTATCGTTTTGATTATCCTCTACTCCTGCAAGGTTGTCTTCTTTTCTTCTTCTGCATTTAGGTCCCATTTCTTAACCGAAATTTAATTTATGCTTGCATTCATTTGTACCTCATTCTATAATCGCGACATTTTGCTTTAGGTATATTTCTATGATTGAAGGATGTGGGTCTGTTCAGTGCAGGGTCATTACATATGCTGATTGAGTATCATTGTGTAGGTTTTGTTAGTGTAGTCTCTTTTCCGGTTCATATTTTTTTAGTAACTGATAGCGGTATTACTTGAGTGTTGCCCCCGTTGGTGGGTATCTGCTCCTGCTCGTAGCTTTTGGATTTTACTTTTATTGTATATGTATTGTTGGAAATATTCTGTTCTTGTTATAACTTATACCTGTACAAGTGTTGTTCCCCTTGTGCAGCTTTATGACTTATGATTGGCATAGTTTAATTTTGTTCGTTGTCATGCAGATGGATCAGGAGAGGCTTAGAAAGATTGCCAGTGCCGTTCGCACTGGTGGAAAGGGTACCATGAGAAGGTAATTTGTAATATTTGTTGCAACCTTGTGCTTGTCCTGTTCTATTGTTCAGCACTGAAGGAGATGTTGTCAAGTTTGTATTGCTGCCTAAAAATTGATTCGCTTTGATGTATCATAACTACCCTGACTCTTTGCCATATTTGATGGATTGTAAGAACCATCTGATATTTCATTTTTGCAATGTGATAAGAAATTATGCGCCCTTGAAGTTAGTATTTTCATACTAATTTACATTCATTTTTTACAACTACAAACTAAAATAGAGGGTATTATCAGGAACCTCTTTTAAGACATAATTAATGCCACTATTAAAACTTCTAGCTCATTGTTTTGCTCCGACCTGATAGCTTTTGAAATTTGAAGTCTTTAAGTGCTTCCCCAAGGTTATGCAATAATGTCATCATCTTGGTTACCTTATGGTAATTTTTCACTTGGTAAGTCTTTCCGTGTCATTCACATCCCATTGTCTTGAATATGTAAAAAGATGTTTTATTTTCACGTCATAATCGTTCTATTATTTTTTCAATGAAATCCACTAAAGTATTGCCTTGTTATTCCATTGGTTGAATTTTTATTCTCAAACAATTGCCCTTGATAATAGAAAGAAGAAGGCAGTTCATAAGACCACCACAACAGATGACAAAAGGCTCCAGAGCACCCTTAAGAGAATTGGGGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTGGTTATCCAATTCAACAACCCGAAGGGTAACTTTTATTAGCCAATTTATTGTACTTTATTCTTATTGACAGAAATTATTCTTGGATGGCTCTTGACTATTTTTTGAAACTTTTTTCCTGCCCAGTTCAAGCATCTATTGCTGCAAACACCTGGGTTGTTAGTGGTTCTCCTCAAACAAAGAGTATGTATCTCTGCTAAACTGTGTTGTAAATCTAGTAACATGATTGTCTTCATCCCACTGTTATAATATAAATTGACATACTGGACAACCATCGGAGGCATCTTAGGTAGTAGTTGTAGTTCTTTGAGAGAATGGTTTCTTGTTTTGGCAATTGGATCATGGCTACAGGAAAATTATGTTCTTCGACCTTGTGAGATCTCAACAGTTCTTAGTGGATTTGTTTAGTTTTCATTGTATATTATTTCATTGAACCTGCATCTTCTTACCCCCTTCGTACTATTTCTTACTGTTAGAAATCATCTAGTTTGTACAATAGATCTTGTTGTCTATTTGGGCGGAGTTAAATTGTCTTTCATTTTAATTTTTCTTCTTCTTTTGTAAAATTCTAATAATTTGTGCGTTTTCCAACTACAGAATTGCAGGATATCTTGCCTGGTATCATCAATCAATTGGGTAATTTACCTCTTAAGTTGTATTTGTTCTCGATTGGTTTGAACTTCAAAATAATGTTTCTTGTTCTATTATCCTCAGGGCCGGATAACTTGGACAACTTGCGTAAATTGGCTGAACAGTTTAAACAGCAAGCACCTGGAGCAGGTGGTGATGCAAAGAATGCCCAAGAGGAGGATGACGATGTTCCAGAACTTGTCGAGGGAGAGACTTTTGAAGCTCCTGCAGAAGAAAATCGTTCTTCTTAGAGAGATCCTTTTGAATGAAAGGAGTGTTTTATGCCGTTTTATACTTCCTAGAGTTGCTCCAGACAAGTTTTTATGATTTCGATAATTCTTAATCTTATCATAATTTAACTTGTTCTCTTTATGATGAGGAACGTTACTTTC

mRNA sequence

TTTTGATTTTGGTGCATCAGTTCATAGCTGCTTTAGCAGCCTATAATTATTATATGGAGGGAATGGGCATAACAATCTGTTAGCGCCGTCCGGGAGTCTACCTTTCTTCCGCGAGCCTCAGTCTTATCCCCCACCTCCAAAACCCTAGCCCAAAGATGGATCAGGAGAGGCTTAGAAAGATTGCCAGTGCCGTTCGCACTGGTGGAAAGGGTACCATGAGAAGAAAGAAGAAGGCAGTTCATAAGACCACCACAACAGATGACAAAAGGCTCCAGAGCACCCTTAAGAGAATTGGGGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTGGTTATCCAATTCAACAACCCGAAGGTTCAAGCATCTATTGCTGCAAACACCTGGGTTGTTAGTGGTTCTCCTCAAACAAAGAAATTGCAGGATATCTTGCCTGGTATCATCAATCAATTGGGGCCGGATAACTTGGACAACTTGCGTAAATTGGCTGAACAGTTTAAACAGCAAGCACCTGGAGCAGGTGGTGATGCAAAGAATGCCCAAGAGGAGGATGACGATGTTCCAGAACTTGTCGAGGGAGAGACTTTTGAAGCTCCTGCAGAAGAAAATCGTTCTTCTTAGAGAGATCCTTTTGAATGAAAGGAGTGTTTTATGCCGTTTTATACTTCCTAGAGTTGCTCCAGACAAGTTTTTATGATTTCGATAATTCTTAATCTTATCATAATTTAACTTGTTCTCTTTATGATGAGGAACGTTACTTTC

Coding sequence (CDS)

ATGGATCAGGAGAGGCTTAGAAAGATTGCCAGTGCCGTTCGCACTGGTGGAAAGGGTACCATGAGAAGAAAGAAGAAGGCAGTTCATAAGACCACCACAACAGATGACAAAAGGCTCCAGAGCACCCTTAAGAGAATTGGGGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTGGTTATCCAATTCAACAACCCGAAGGTTCAAGCATCTATTGCTGCAAACACCTGGGTTGTTAGTGGTTCTCCTCAAACAAAGAAATTGCAGGATATCTTGCCTGGTATCATCAATCAATTGGGGCCGGATAACTTGGACAACTTGCGTAAATTGGCTGAACAGTTTAAACAGCAAGCACCTGGAGCAGGTGGTGATGCAAAGAATGCCCAAGAGGAGGATGACGATGTTCCAGAACTTGTCGAGGGAGAGACTTTTGAAGCTCCTGCAGAAGAAAATCGTTCTTCTTAG

Protein sequence

MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFKQQAPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS

Homology

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BLAST of CcUC01G016760 vs. NCBI nr
Match: KAA0036053.1 (nascent polypeptide-associated complex subunit beta-like isoform X2 [Cucumis melo var. makuwa] >TYJ98860.1 nascent polypeptide-associated complex subunit beta-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 301.6 bits (771), Expect = 4.0e-78
Identity = 158/159 (99.37%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 63  MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 122

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 123 KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 182

Query: 121 QQAPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 160
           QQ PGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 183 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 221

[Close]

BLAST of CcUC01G016760 vs. NCBI nr
Match: XP_008438287.1 (PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X1 [Cucumis melo])

HSP 1 Score: 301.6 bits (771), Expect = 4.0e-78
Identity = 158/159 (99.37%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 121 QQAPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 160
           QQ PGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 125 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of CcUC01G016760 vs. NCBI nr
Match: XP_008438373.1 (PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X2 [Cucumis melo] >XP_008438455.1 PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X2 [Cucumis melo] >XP_038893518.1 nascent polypeptide-associated complex subunit beta-like [Benincasa hispida] >XP_038893519.1 nascent polypeptide-associated complex subunit beta-like [Benincasa hispida])

HSP 1 Score: 301.6 bits (771), Expect = 4.0e-78
Identity = 158/159 (99.37%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 121 QQAPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 160
           QQ PGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 121 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 159

[Close]

BLAST of CcUC01G016760 vs. NCBI nr
Match: XP_004137393.1 (nascent polypeptide-associated complex subunit beta isoform X1 [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 4.4e-77
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 121 QQAPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 160
           QQ PGAGGD KNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 125 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of CcUC01G016760 vs. NCBI nr
Match: XP_004137394.1 (nascent polypeptide-associated complex subunit beta isoform X2 [Cucumis sativus] >KAE8652498.1 hypothetical protein Csa_014293 [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 4.4e-77
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 121 QQAPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 160
           QQ PGAGGD KNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 121 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 159

[Close]

BLAST of CcUC01G016760 vs. ExPASy Swiss-Prot
Match: Q9CAT7 (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana OX=3702 GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.4e-63
Identity = 128/157 (81.53%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M++E+L K+A+ VRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 QQAPGAGGDAKNAQEE--DDDVPELVEGETFEAPAEE 156
           +QAPGAG      QEE  DDDVP+LV GETFE PA E
Sbjct: 121 KQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATE 157

[Close]

BLAST of CcUC01G016760 vs. ExPASy Swiss-Prot
Match: Q9SMW7 (Basic transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=BTF3 PE=1 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.9e-60
Identity = 126/157 (80.25%), Postives = 140/157 (89.17%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M++E+L K+A+ VRTGGKGT+RRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 QQAPGAGGDAKNA--QEEDDDVPELVEGETFEAPAEE 156
           +QA G G  A     +E+DDDVPELV GETFE  AEE
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEE 156

[Close]

BLAST of CcUC01G016760 vs. ExPASy Swiss-Prot
Match: Q6PC91 (Transcription factor BTF3 homolog 4 OS=Danio rerio OX=7955 GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.5e-39
Identity = 87/147 (59.18%), Postives = 114/147 (77.55%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLVVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI FNNPKVQAS++ANT+ ++G  +TK+L ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 KQQA-PGAGGDAKNAQEEDDDVPELVE 146
            +Q        A++  EEDDDVP+LVE
Sbjct: 121 PRQVLDNKAPKAEDIDEEDDDVPDLVE 147

[Close]

BLAST of CcUC01G016760 vs. ExPASy Swiss-Prot
Match: Q4KLF5 (Transcription factor BTF3 homolog 4 OS=Xenopus laevis OX=8355 GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-37
Identity = 88/157 (56.05%), Postives = 116/157 (73.89%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI FNNPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 KQQA-PGAGGDAKNAQEEDDDVPELVEGETFEAPAEE 156
            +Q         ++ +EEDDDVPELV G   EA   E
Sbjct: 121 PRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156

[Close]

BLAST of CcUC01G016760 vs. ExPASy Swiss-Prot
Match: Q5M8V0 (Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis OX=8364 GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-37
Identity = 88/157 (56.05%), Postives = 116/157 (73.89%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI FNNPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 KQQA-PGAGGDAKNAQEEDDDVPELVEGETFEAPAEE 156
            +Q         ++ +EEDDDVPELV G   EA   E
Sbjct: 121 PRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156

[Close]

BLAST of CcUC01G016760 vs. ExPASy TrEMBL
Match: A0A1S3AX23 (Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=LOC103483414 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.9e-78
Identity = 158/159 (99.37%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 121 QQAPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 160
           QQ PGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 121 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 159

[Close]

BLAST of CcUC01G016760 vs. ExPASy TrEMBL
Match: A0A5A7SZH7 (Nascent polypeptide-associated complex subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00560 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.9e-78
Identity = 158/159 (99.37%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 63  MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 122

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 123 KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 182

Query: 121 QQAPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 160
           QQ PGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 183 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 221

[Close]

BLAST of CcUC01G016760 vs. ExPASy TrEMBL
Match: A0A1S3AWM8 (Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=LOC103483414 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.9e-78
Identity = 158/159 (99.37%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 121 QQAPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 160
           QQ PGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 125 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of CcUC01G016760 vs. ExPASy TrEMBL
Match: A0A0A0LPY4 (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus OX=3659 GN=Csa_1G031860 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.1e-77
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 121 QQAPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 160
           QQ PGAGGD KNAQEEDDDVPELVEGETFEAPAEENRSS
Sbjct: 125 QQVPGAGGDPKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of CcUC01G016760 vs. ExPASy TrEMBL
Match: A0A6J1KF12 (Nascent polypeptide-associated complex subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111493285 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.4e-75
Identity = 153/159 (96.23%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 121 QQAPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 160
           Q APGAG DAKNAQEEDDDVPELV+GETFEAPAEENR+S
Sbjct: 121 QHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 159

[Close]

BLAST of CcUC01G016760 vs. TAIR 10
Match: AT1G73230.1 (Nascent polypeptide-associated complex NAC )

HSP 1 Score: 241.1 bits (614), Expect = 6.0e-64
Identity = 128/157 (81.53%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M++E+L K+A+ VRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 QQAPGAGGDAKNAQEE--DDDVPELVEGETFEAPAEE 156
           +QAPGAG      QEE  DDDVP+LV GETFE PA E
Sbjct: 121 KQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATE 157

[Close]

BLAST of CcUC01G016760 vs. TAIR 10
Match: AT1G17880.1 (basic transcription factor 3 )

HSP 1 Score: 232.3 bits (591), Expect = 2.8e-61
Identity = 126/157 (80.25%), Postives = 140/157 (89.17%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M++E+L K+A+ VRTGGKGT+RRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 QQAPGAGGDAKNA--QEEDDDVPELVEGETFEAPAEE 156
           +QA G G  A     +E+DDDVPELV GETFE  AEE
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEE 156

The following BLAST results are available for this feature:

BLAST of CcUC01G016760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036053.1	4.0e-78	99.37	nascent polypeptide-associated complex subunit beta-like isoform X2 [Cucumis mel...	[more]
XP_008438287.1	4.0e-78	99.37	PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X1 [...	[more]
XP_008438373.1	4.0e-78	99.37	PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X2 [...	[more]
XP_004137393.1	4.4e-77	98.11	nascent polypeptide-associated complex subunit beta isoform X1 [Cucumis sativus]	[more]
XP_004137394.1	4.4e-77	98.11	nascent polypeptide-associated complex subunit beta isoform X2 [Cucumis sativus]...	[more]

BLAST of CcUC01G016760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAT7	8.4e-63	81.53	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana OX=3...	[more]
Q9SMW7	3.9e-60	80.25	Basic transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=BTF3 PE=1 SV=1	[more]
Q6PC91	8.5e-39	59.18	Transcription factor BTF3 homolog 4 OS=Danio rerio OX=7955 GN=btf3l4 PE=2 SV=1	[more]
Q4KLF5	1.2e-37	56.05	Transcription factor BTF3 homolog 4 OS=Xenopus laevis OX=8355 GN=btf3l4 PE=2 SV=...	[more]
Q5M8V0	1.2e-37	56.05	Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis OX=8364 GN=btf3l4 PE=2...	[more]

BLAST of CcUC01G016760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AX23	1.9e-78	99.37	Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=L...	[more]
A0A5A7SZH7	1.9e-78	99.37	Nascent polypeptide-associated complex subunit beta OS=Cucumis melo var. makuwa ...	[more]
A0A1S3AWM8	1.9e-78	99.37	Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=L...	[more]
A0A0A0LPY4	2.1e-77	98.11	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus OX=3659 G...	[more]
A0A6J1KF12	3.4e-75	96.23	Nascent polypeptide-associated complex subunit beta OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of CcUC01G016760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73230.1	6.0e-64	81.53	Nascent polypeptide-associated complex NAC	[more]
AT1G17880.1	2.8e-61	80.25	basic transcription factor 3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 36..91 e-value: 1.3E-22 score: 91.2
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 36..91 e-value: 3.5E-20 score: 71.8
IPR002715	Nascent polypeptide-associated complex NAC domain	PROSITE	PS51151	NAC_AB	coord: 33..97 score: 16.246674
IPR038187	NAC A/B domain superfamily	GENE3D	2.20.70.30		coord: 48..104 e-value: 2.0E-26 score: 93.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR10351:SF58	NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT BETA	coord: 1..157
IPR039370	Transcription factor BTF3	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER	coord: 1..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC01G016760.1	CcUC01G016760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005854	nascent polypeptide-associated complex
cellular_component	GO:0042788	polysomal ribosome