CcUC01G016610 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC01G016610
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	transcription factor PRE5-like
Location	CicolChr01: 29312110 .. 29312684 (-)
RNA-Seq Expression	CcUC01G016610
Synteny	CcUC01G016610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCACTCTTCCCCCTCCCCTAAAACACCATTCCTTTCCAATTCTCCTTCTTTCATTCATGGCTTCCTCCAAATTAGGCGACGACCAGCTTCAAAATCTCATCTTCAAATTACAAACTTTGCTCCCTCACCTCAACCATAAGCCGGATGATTCTACGGTATATATATATACTCGTATATTCTCTTCCAACTTACGATATAAACTTTTGAGTTCATCGGTGGTTTGACATGTATGCAGGTACCGACAGCGGAGATATTGAAGGAAACGTGTGATTATATAAAGAAATTGCAGAGGGAGGTGGATGATTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGATGTTGACTTAGAGATGGTTAAGGATCTTCTTCTTACTTAAAAAGAAATATTTTGAGATGAATTTTTCTTACTCTCATCACTGTGTCTTTGTATTTTGAAACTGATATGTTTGGTCTCAGCATTACCAACCGACAGTTGAGAGAGAAAAGTGGTGGATTCTATAATCTATATTAAATGTATTTTTCTATTTTTATCCGTCTCATGTTTAATATATGTATATCTAATTCTATG

mRNA sequence

CTTCACTCTTCCCCCTCCCCTAAAACACCATTCCTTTCCAATTCTCCTTCTTTCATTCATGGCTTCCTCCAAATTAGGCGACGACCAGCTTCAAAATCTCATCTTCAAATTACAAACTTTGCTCCCTCACCTCAACCATAAGCCGGATGATTCTACGGTACCGACAGCGGAGATATTGAAGGAAACGTGTGATTATATAAAGAAATTGCAGAGGGAGGTGGATGATTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGATGTTGACTTAGAGATGGTTAAGGATCTTCTTCTTACTTAAAAAGAAATATTTTGAGATGAATTTTTCTTACTCTCATCACTGTGTCTTTGTATTTTGAAACTGATATGTTTGGTCTCAGCATTACCAACCGACAGTTGAGAGAGAAAAGTGGTGGATTCTATAATCTATATTAAATGTATTTTTCTATTTTTATCCGTCTCATGTTTAATATATGTATATCTAATTCTATG

Coding sequence (CDS)

ATGGCTTCCTCCAAATTAGGCGACGACCAGCTTCAAAATCTCATCTTCAAATTACAAACTTTGCTCCCTCACCTCAACCATAAGCCGGATGATTCTACGGTACCGACAGCGGAGATATTGAAGGAAACGTGTGATTATATAAAGAAATTGCAGAGGGAGGTGGATGATTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGATGTTGACTTAGAGATGGTTAAGGATCTTCTTCTTACTTAA

Protein sequence

MASSKLGDDQLQNLIFKLQTLLPHLNHKPDDSTVPTAEILKETCDYIKKLQREVDDLSERLWKQLDSMDVDLEMVKDLLLT

Homology

[Close]

BLAST of CcUC01G016610 vs. NCBI nr
Match: XP_038895474.1 (transcription factor PRE5-like [Benincasa hispida])

HSP 1 Score: 131.3 bits (329), Expect = 3.7e-27
Identity = 67/83 (80.72%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 1   MASSKLGDDQLQNLIFKLQTLLPHLNHKPDDS---TVPTAEILKETCDYIKKLQREVDDL 60
           MASSKL DD LQNL+FKLQTLLPHLN KPD+    +V   +ILKETCDYIKKLQREVDDL
Sbjct: 42  MASSKLADDDLQNLVFKLQTLLPHLNRKPDNDSAVSVSATDILKETCDYIKKLQREVDDL 101

Query: 61  SERLWKQLDSMDVDLEMVKDLLL 81
           SERLWKQLDSM VDLEMVKDL+L
Sbjct: 102 SERLWKQLDSMGVDLEMVKDLIL 124

[Close]

BLAST of CcUC01G016610 vs. NCBI nr
Match: XP_011649678.1 (transcription factor PRE5 [Cucumis sativus] >KGN63980.1 hypothetical protein Csa_014368 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 3.1e-26
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1  MASSKLGDDQLQNLIFKLQTLLPHLNHKPDDST-VPTAEILKETCDYIKKLQREVDDLSE 60
          MASSKLGDD+L+NL+ KLQTLLP LNHKP +S+ V   EILKETCDYIKKLQREVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLDSMDVDLEMVKDLL 80
          RLWKQLDSM +D EMVKDLL
Sbjct: 61 RLWKQLDSMGIDFEMVKDLL 80

[Close]

BLAST of CcUC01G016610 vs. NCBI nr
Match: XP_008440200.1 (PREDICTED: transcription factor PRE5-like [Cucumis melo] >KAA0036068.1 transcription factor PRE5-like [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 5.3e-26
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MASSKLGDDQLQNLIFKLQTLLPHLNHKPDDST-VPTAEILKETCDYIKKLQREVDDLSE 60
          MASSKLGD++L+NL+ KL+TLLP LNHKPD+S+   T EILKETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMDVDLEMVKDLLL 81
          RLWKQLDSM VD EMVKDLL+
Sbjct: 61 RLWKQLDSMGVDFEMVKDLLI 81

[Close]

BLAST of CcUC01G016610 vs. NCBI nr
Match: KAG7020038.1 (Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24
Identity = 64/79 (81.01%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1  MASSKLGDDQLQNLIFKLQTLLPHLNHKPDDSTVPTAEILKETCDYIKKLQREVDDLSER 60
          MASS L DDQL+NL+ +LQTLLP LNH    STV TAEILKETCDYIKKLQREVDDLSER
Sbjct: 1  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSER 60

Query: 61 LWKQLDSMDVDLEMVKDLL 80
          LWKQLDSM VD EMVK LL
Sbjct: 61 LWKQLDSMGVDFEMVKHLL 79

[Close]

BLAST of CcUC01G016610 vs. NCBI nr
Match: KAG6584448.1 (Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.5 bits (306), Expect = 1.7e-24
Identity = 63/79 (79.75%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1  MASSKLGDDQLQNLIFKLQTLLPHLNHKPDDSTVPTAEILKETCDYIKKLQREVDDLSER 60
          MASS L DDQL+NL+ +LQTLLP LNH    STV TAEILKETCDYIKKLQREVDDLSER
Sbjct: 1  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTSTVSTAEILKETCDYIKKLQREVDDLSER 60

Query: 61 LWKQLDSMDVDLEMVKDLL 80
          LWKQLDSM +D EMVK LL
Sbjct: 61 LWKQLDSMGIDFEMVKHLL 79

[Close]

BLAST of CcUC01G016610 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-11
Identity = 31/69 (44.93%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 3  SSKLGDDQLQNLIFKLQTLLPHLNHKPDDSTVPTAEILKETCDYIKKLQREVDDLSERLW 62
          +S++ DDQ+ +L+ KL+  LP ++ +     V  +++L+ETC+YI+KL REVD+LS+RL 
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLS 71

Query: 63 KQLDSMDVD 72
          + LDS+D D
Sbjct: 72 QLLDSVDED 80

[Close]

BLAST of CcUC01G016610 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-10
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 3  SSKLGDDQLQNLIFKLQTLLPHLNHKPDDSTVPTAEILKETCDYIKKLQREVDDLSERLW 62
          SS++ DDQ+ +L+ KLQ L+P L  +  D  V  +++L+ETC+YI+ L REVDDLS+RL 
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELRRRRSDK-VSASKVLQETCNYIRNLHREVDDLSDRLS 73

Query: 63 KQLDSMD 70
          + L S D
Sbjct: 74 ELLASTD 79

[Close]

BLAST of CcUC01G016610 vs. ExPASy Swiss-Prot
Match: A2Z730 (Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-10
Identity = 33/69 (47.83%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 2  ASSKLGDDQLQNLIFKLQTLLPHLNHKPDDSTVPTAEILKETCDYIKKLQREVDDLSERL 61
          +++++ D+Q+ +L+ KLQ LLP    + +D  VP+A +L+ETC YI+ L REVDDLSERL
Sbjct: 11 SAARITDEQIGDLVSKLQALLPEARLRSND-RVPSARVLQETCSYIRSLHREVDDLSERL 70

Query: 62 WKQLDSMDV 71
           + L + DV
Sbjct: 71 AELLAAADV 78

[Close]

BLAST of CcUC01G016610 vs. ExPASy Swiss-Prot
Match: Q338G6 (Transcription factor ILI7 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI7 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-10
Identity = 33/69 (47.83%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 2  ASSKLGDDQLQNLIFKLQTLLPHLNHKPDDSTVPTAEILKETCDYIKKLQREVDDLSERL 61
          +++++ D+Q+ +L+ KLQ LLP    + +D  VP+A +L+ETC YI+ L REVDDLSERL
Sbjct: 11 SAARITDEQIGDLVSKLQALLPEARLRSND-RVPSARVLQETCSYIRSLHREVDDLSERL 70

Query: 62 WKQLDSMDV 71
           + L + DV
Sbjct: 71 AELLAAADV 78

[Close]

BLAST of CcUC01G016610 vs. ExPASy Swiss-Prot
Match: Q9LXG5 (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-10
Identity = 29/68 (42.65%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 2  ASSKLGDDQLQNLIFKLQTLLPHLNHKPDDSTVPTAEILKETCDYIKKLQREVDDLSERL 61
          +SS++ DDQ+ +LI KL+  +P +      +TV  +++L+ETC+YI+ L +E DDLS+RL
Sbjct: 12 SSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRL 71

Query: 62 WKQLDSMD 70
           + L+S+D
Sbjct: 72 TQLLESID 79

[Close]

BLAST of CcUC01G016610 vs. ExPASy TrEMBL
Match: A0A0A0LQ05 (DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G032990 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.5e-26
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1  MASSKLGDDQLQNLIFKLQTLLPHLNHKPDDST-VPTAEILKETCDYIKKLQREVDDLSE 60
          MASSKLGDD+L+NL+ KLQTLLP LNHKP +S+ V   EILKETCDYIKKLQREVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLDSMDVDLEMVKDLL 80
          RLWKQLDSM +D EMVKDLL
Sbjct: 61 RLWKQLDSMGIDFEMVKDLL 80

[Close]

BLAST of CcUC01G016610 vs. ExPASy TrEMBL
Match: A0A5A7SZP9 (Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00610 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-26
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MASSKLGDDQLQNLIFKLQTLLPHLNHKPDDST-VPTAEILKETCDYIKKLQREVDDLSE 60
          MASSKLGD++L+NL+ KL+TLLP LNHKPD+S+   T EILKETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMDVDLEMVKDLLL 81
          RLWKQLDSM VD EMVKDLL+
Sbjct: 61 RLWKQLDSMGVDFEMVKDLLI 81

[Close]

BLAST of CcUC01G016610 vs. ExPASy TrEMBL
Match: A0A1S3B0J1 (transcription factor PRE5-like OS=Cucumis melo OX=3656 GN=LOC103484708 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-26
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MASSKLGDDQLQNLIFKLQTLLPHLNHKPDDST-VPTAEILKETCDYIKKLQREVDDLSE 60
          MASSKLGD++L+NL+ KL+TLLP LNHKPD+S+   T EILKETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMDVDLEMVKDLLL 81
          RLWKQLDSM VD EMVKDLL+
Sbjct: 61 RLWKQLDSMGVDFEMVKDLLI 81

[Close]

BLAST of CcUC01G016610 vs. ExPASy TrEMBL
Match: A0A5D3BKI2 (Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00710 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-23
Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1  MASSKLGDDQLQNLIFKLQTLLPHLNHKPDDST-VPTAEILKETCDYIKKLQREVDDLSE 60
          MASSKLGD++L+NL+ KL+TLLP LNHKPD+S+   T EILKETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMDVDLEM 75
          RLWKQLDSM VD EM
Sbjct: 61 RLWKQLDSMGVDFEM 75

[Close]

BLAST of CcUC01G016610 vs. ExPASy TrEMBL
Match: A0A067K4V8 (BHLH domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11607 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.6e-12
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 3  SSKLGDDQLQNLIFKLQTLLPHLNHKPDDSTVPTAEILKETCDYIKKLQREVDDLSERLW 62
          +SK+  +++ +LI KLQ LLPH+N +  DS V  ++ILKETC YI KLQREVDDLSE+L 
Sbjct: 11 ASKITKNEIIDLILKLQALLPHINQR-QDSRVSASKILKETCSYIGKLQREVDDLSEKLS 70

Query: 63 KQLDSMD---VDLEMVKDLLL 81
          + LDSMD   VD+E +  +LL
Sbjct: 71 QMLDSMDISNVDVESLISILL 90

[Close]

BLAST of CcUC01G016610 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-12
Identity = 31/69 (44.93%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 3  SSKLGDDQLQNLIFKLQTLLPHLNHKPDDSTVPTAEILKETCDYIKKLQREVDDLSERLW 62
          +S++ DDQ+ +L+ KL+  LP ++ +     V  +++L+ETC+YI+KL REVD+LS+RL 
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLS 71

Query: 63 KQLDSMDVD 72
          + LDS+D D
Sbjct: 72 QLLDSVDED 80

[Close]

BLAST of CcUC01G016610 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-11
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 3  SSKLGDDQLQNLIFKLQTLLPHLNHKPDDSTVPTAEILKETCDYIKKLQREVDDLSERLW 62
          SS++ DDQ+ +L+ KLQ L+P L  +  D  V  +++L+ETC+YI+ L REVDDLS+RL 
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELRRRRSDK-VSASKVLQETCNYIRNLHREVDDLSDRLS 73

Query: 63 KQLDSMD 70
          + L S D
Sbjct: 74 ELLASTD 79

[Close]

BLAST of CcUC01G016610 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-11
Identity = 29/68 (42.65%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 2  ASSKLGDDQLQNLIFKLQTLLPHLNHKPDDSTVPTAEILKETCDYIKKLQREVDDLSERL 61
          +SS++ DDQ+ +LI KL+  +P +      +TV  +++L+ETC+YI+ L +E DDLS+RL
Sbjct: 12 SSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRL 71

Query: 62 WKQLDSMD 70
           + L+S+D
Sbjct: 72 TQLLESID 79

[Close]

BLAST of CcUC01G016610 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-11
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 3  SSKLGDDQLQNLIFKLQTLLPHLNHKPDDSTVPTAEILKETCDYIKKLQREVDDLSERLW 62
          +S++ +DQ+ +LI KLQ LLP L        V  A +L++TC+YI+ L REVDDLSERL 
Sbjct: 14 TSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLS 73

Query: 63 KQLDSMD-VDLEMVKDLL 80
          + L + D     +++ LL
Sbjct: 74 ELLANSDTAQAALIRSLL 91

[Close]

BLAST of CcUC01G016610 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 61.6 bits (148), Expect = 3.3e-10
Identity = 27/70 (38.57%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 2  ASSKLGDDQLQNLIFKLQTLLPHLNHKPDDSTVPTAEILKETCDYIKKLQREVDDLSERL 61
          ++ ++ D+Q+ +L+ KL+ +LP +  +        +++L+ETC+YI+ L REVD+LSERL
Sbjct: 11 SAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERL 70

Query: 62 WKQLDSMDVD 72
           + L+S+D D
Sbjct: 71 SQLLESVDED 80

The following BLAST results are available for this feature:

BLAST of CcUC01G016610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895474.1	3.7e-27	80.72	transcription factor PRE5-like [Benincasa hispida]	[more]
XP_011649678.1	3.1e-26	81.25	transcription factor PRE5 [Cucumis sativus] >KGN63980.1 hypothetical protein Csa...	[more]
XP_008440200.1	5.3e-26	79.01	PREDICTED: transcription factor PRE5-like [Cucumis melo] >KAA0036068.1 transcrip...	[more]
KAG7020038.1	1.3e-24	81.01	Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6584448.1	1.7e-24	79.75	Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CcUC01G016610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LJX1	3.8e-11	44.93	Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1	[more]
Q8GW32	1.5e-10	49.25	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
A2Z730	1.9e-10	47.83	Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV...	[more]
Q338G6	1.9e-10	47.83	Transcription factor ILI7 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI7 PE=3 ...	[more]
Q9LXG5	1.9e-10	42.65	Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1	[more]

BLAST of CcUC01G016610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ05	1.5e-26	81.25	DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G032990 PE=4 SV=1	[more]
A0A5A7SZP9	2.6e-26	79.01	Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3B0J1	2.6e-26	79.01	transcription factor PRE5-like OS=Cucumis melo OX=3656 GN=LOC103484708 PE=4 SV=1	[more]
A0A5D3BKI2	1.2e-23	78.67	Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A067K4V8	3.6e-12	55.56	BHLH domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11607 PE=4 S...	[more]

BLAST of CcUC01G016610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G28857.1	2.7e-12	44.93	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT1G26945.1	1.0e-11	49.25	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G15160.1	1.3e-11	42.65	BANQUO 2	[more]
AT1G74500.1	2.3e-11	43.59	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT5G39860.1	3.3e-10	38.57	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..67
None	No IPR available	PANTHER	PTHR38546:SF3	DNA BINDING PROTEIN	coord: 3..79
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 8..78 e-value: 7.2E-9 score: 37.7
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 9..61
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 9..51 e-value: 2.0E-7 score: 30.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 1..50 score: 9.533896
IPR044172	Transcription factor ILI2-like	PANTHER	PTHR38546	DNA BINDING PROTEIN	coord: 3..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC01G016610.1	CcUC01G016610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity