CcUC01G016140 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAACTCCATCGAGGTCTGAGGTCCTCTCGCTCTTTCGTTCTCTGCTGCGAACGGCGCGTCAATTTCCCGATTACAACATCAGAGAATACACCAAACGCCGCACCATCGATGCCTTCCGAGAAAATCAGACCCTCTCCGACGCTTCATCAATCTCCTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGCCCTTGTTTACTCTCTTTACGCACCTAAGGCCAAGAGTATCATGGATGTCAACCTCTGA ATGGCAACTCCATCGAGGTCTGAGGTCCTCTCGCTCTTTCGTTCTCTGCTGCGAACGGCGCGTCAATTTCCCGATTACAACATCAGAGAATACACCAAACGCCGCACCATCGATGCCTTCCGAGAAAATCAGACCCTCTCCGACGCTTCATCAATCTCCTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGCCCTTGTTTACTCTCTTTACGCACCTAAGGCCAAGAGTATCATGGATGTCAACCTCTGA ATGGCAACTCCATCGAGGTCTGAGGTCCTCTCGCTCTTTCGTTCTCTGCTGCGAACGGCGCGTCAATTTCCCGATTACAACATCAGAGAATACACCAAACGCCGCACCATCGATGCCTTCCGAGAAAATCAGACCCTCTCCGACGCTTCATCAATCTCCTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGCCCTTGTTTACTCTCTTTACGCACCTAAGGCCAAGAGTATCATGGATGTCAACCTCTGA MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL Homology
BLAST of CcUC01G016140 vs. NCBI nr
Match: XP_038894896.1 (LYR motif-containing protein 4 [Benincasa hispida]) HSP 1 Score: 162.5 bits (410), Expect = 1.6e-36 Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0
BLAST of CcUC01G016140 vs. NCBI nr
Match: KAG6607477.1 (LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037133.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 154.5 bits (389), Expect = 4.4e-34 Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0
BLAST of CcUC01G016140 vs. NCBI nr
Match: KGN64034.1 (hypothetical protein Csa_014098 [Cucumis sativus]) HSP 1 Score: 153.3 bits (386), Expect = 9.8e-34 Identity = 79/87 (90.80%), Postives = 83/87 (95.40%), Query Frame = 0
BLAST of CcUC01G016140 vs. NCBI nr
Match: XP_022137452.1 (LYR motif-containing protein 4 [Momordica charantia]) HSP 1 Score: 151.4 bits (381), Expect = 3.7e-33 Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 0
BLAST of CcUC01G016140 vs. NCBI nr
Match: KAF5807263.1 (putative complex 1 LYR protein [Helianthus annuus]) HSP 1 Score: 136.7 bits (343), Expect = 9.5e-29 Identity = 68/86 (79.07%), Postives = 82/86 (95.35%), Query Frame = 0
BLAST of CcUC01G016140 vs. ExPASy Swiss-Prot
Match: B5FZA8 (LYR motif-containing protein 4 OS=Taeniopygia guttata OX=59729 GN=LYRM4 PE=3 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 2.7e-10 Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 0
BLAST of CcUC01G016140 vs. ExPASy Swiss-Prot
Match: Q9HD34 (LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 1.5e-08 Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0
BLAST of CcUC01G016140 vs. ExPASy Swiss-Prot
Match: Q8K215 (LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 2.5e-08 Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 0
BLAST of CcUC01G016140 vs. ExPASy Swiss-Prot
Match: B5XD90 (LYR motif-containing protein 4B OS=Salmo salar OX=8030 GN=lyrm4b PE=3 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07 Identity = 28/79 (35.44%), Postives = 48/79 (60.76%), Query Frame = 0
BLAST of CcUC01G016140 vs. ExPASy Swiss-Prot
Match: Q0VCG0 (LYR motif-containing protein 4 OS=Bos taurus OX=9913 GN=LYRM4 PE=3 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 1.6e-07 Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 0
BLAST of CcUC01G016140 vs. ExPASy TrEMBL
Match: A0A0A0LST7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039010 PE=4 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 4.7e-34 Identity = 79/87 (90.80%), Postives = 83/87 (95.40%), Query Frame = 0
BLAST of CcUC01G016140 vs. ExPASy TrEMBL
Match: A0A6J1C8A4 (LYR motif-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111008892 PE=4 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 1.8e-33 Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 0
BLAST of CcUC01G016140 vs. ExPASy TrEMBL
Match: A0A251UU63 (Putative complex 1 LYR protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0157171 PE=4 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 4.6e-29 Identity = 68/86 (79.07%), Postives = 82/86 (95.35%), Query Frame = 0
BLAST of CcUC01G016140 vs. ExPASy TrEMBL
Match: A0A1S3XFP4 (LYR motif-containing protein 4 OS=Nicotiana tabacum OX=4097 GN=LOC107764517 PE=4 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 3.9e-28 Identity = 65/87 (74.71%), Postives = 80/87 (91.95%), Query Frame = 0
BLAST of CcUC01G016140 vs. ExPASy TrEMBL
Match: A0A2J6KBZ0 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X22101 PE=4 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 3.9e-28 Identity = 65/84 (77.38%), Postives = 80/84 (95.24%), Query Frame = 0
BLAST of CcUC01G016140 vs. TAIR 10
Match: AT5G61220.1 (LYR family of Fe/S cluster biogenesis protein ) HSP 1 Score: 98.6 bits (244), Expect = 2.7e-21 Identity = 52/84 (61.90%), Postives = 62/84 (73.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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