CcUC01G016140 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC01G016140
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLYR motif-containing protein 4
LocationCicolChr01: 28964164 .. 28964430 (-)
RNA-Seq ExpressionCcUC01G016140
SyntenyCcUC01G016140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACTCCATCGAGGTCTGAGGTCCTCTCGCTCTTTCGTTCTCTGCTGCGAACGGCGCGTCAATTTCCCGATTACAACATCAGAGAATACACCAAACGCCGCACCATCGATGCCTTCCGAGAAAATCAGACCCTCTCCGACGCTTCATCAATCTCCTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGCCCTTGTTTACTCTCTTTACGCACCTAAGGCCAAGAGTATCATGGATGTCAACCTCTGA

mRNA sequence

ATGGCAACTCCATCGAGGTCTGAGGTCCTCTCGCTCTTTCGTTCTCTGCTGCGAACGGCGCGTCAATTTCCCGATTACAACATCAGAGAATACACCAAACGCCGCACCATCGATGCCTTCCGAGAAAATCAGACCCTCTCCGACGCTTCATCAATCTCCTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGCCCTTGTTTACTCTCTTTACGCACCTAAGGCCAAGAGTATCATGGATGTCAACCTCTGA

Coding sequence (CDS)

ATGGCAACTCCATCGAGGTCTGAGGTCCTCTCGCTCTTTCGTTCTCTGCTGCGAACGGCGCGTCAATTTCCCGATTACAACATCAGAGAATACACCAAACGCCGCACCATCGATGCCTTCCGAGAAAATCAGACCCTCTCCGACGCTTCATCAATCTCCTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGCCCTTGTTTACTCTCTTTACGCACCTAAGGCCAAGAGTATCATGGATGTCAACCTCTGA

Protein sequence

MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVAKRQALVYSLYAPKAKSIMDVNL
Homology
BLAST of CcUC01G016140 vs. NCBI nr
Match: XP_038894896.1 (LYR motif-containing protein 4 [Benincasa hispida])

HSP 1 Score: 162.5 bits (410), Expect = 1.6e-36
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0

Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGK 60
          MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQ+LSDASSISSAYAGGK
Sbjct: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60

Query: 61 AQLEVAKRQALVYSLYAPKAKSIMDVNL 89
          AQLEVAKRQALVYSLYAPK KSIMDVNL
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVNL 88

BLAST of CcUC01G016140 vs. NCBI nr
Match: KAG6607477.1 (LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037133.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.5 bits (389), Expect = 4.4e-34
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGK 60
          MA PSRSE+L+LFRSLLRTARQFPDYNIREYTKRRTIDAFRENQ+LSD SSISS YAGGK
Sbjct: 1  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGK 60

Query: 61 AQLEVAKRQALVYSLYAPKAKSIMDVN 88
          AQLEVAKRQALVYSLYAPK KSIMDVN
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVN 87

BLAST of CcUC01G016140 vs. NCBI nr
Match: KGN64034.1 (hypothetical protein Csa_014098 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 9.8e-34
Identity = 79/87 (90.80%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGK 60
          MATPS SE+LSLFRSLLRTARQFPDYNIREY KRRTID+FRENQTLSDASSISS YAGG+
Sbjct: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60

Query: 61 AQLEVAKRQALVYSLYAPKAKSIMDVN 88
          AQLEVAKRQA+VYSLYAPK KSIMDVN
Sbjct: 61 AQLEVAKRQAIVYSLYAPKVKSIMDVN 87

BLAST of CcUC01G016140 vs. NCBI nr
Match: XP_022137452.1 (LYR motif-containing protein 4 [Momordica charantia])

HSP 1 Score: 151.4 bits (381), Expect = 3.7e-33
Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 0

Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGK 60
          MATPSRSE+LSLFRSLLRTARQF DYNIREYTKRR IDAFREN++LSD SSISSAYAGGK
Sbjct: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60

Query: 61 AQLEVAKRQALVYSLYAPKAKSIMDVNL 89
          AQLEVAKRQALVYSLYAPK KSIMDV L
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVKL 88

BLAST of CcUC01G016140 vs. NCBI nr
Match: KAF5807263.1 (putative complex 1 LYR protein [Helianthus annuus])

HSP 1 Score: 136.7 bits (343), Expect = 9.5e-29
Identity = 68/86 (79.07%), Postives = 82/86 (95.35%), Query Frame = 0

Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGK 60
          MATPSRSE+L+LFRSLLR+ARQFPDYNIREYTKRRTIDAFR N+TLS+ SSI++A++ G+
Sbjct: 1  MATPSRSEILTLFRSLLRSARQFPDYNIREYTKRRTIDAFRHNKTLSEPSSIAAAFSDGQ 60

Query: 61 AQLEVAKRQALVYSLYAPKAKSIMDV 87
          +QL+VAKRQA+VYSLYAPK KSIMD+
Sbjct: 61 SQLQVAKRQAVVYSLYAPKIKSIMDI 86

BLAST of CcUC01G016140 vs. ExPASy Swiss-Prot
Match: B5FZA8 (LYR motif-containing protein 4 OS=Taeniopygia guttata OX=59729 GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-10
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGK 60
          MA  SR++VL L+R+LLR +++F  YN R Y  RR  DAFREN+ ++D+  I       K
Sbjct: 1  MAASSRAQVLRLYRALLRESQRFSSYNYRTYAIRRIRDAFRENKNIADSEKIEELLNKAK 60

Query: 61 AQLEVAKRQALVYSLYA 78
          A LEV +RQ  +  +YA
Sbjct: 61 ANLEVIQRQGTIDHMYA 77

BLAST of CcUC01G016140 vs. ExPASy Swiss-Prot
Match: Q9HD34 (LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-08
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGK 60
          MA  SR++VLSL+R++LR +++F  YN R Y  RR  DAFREN+ + D   I +     K
Sbjct: 1  MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAK 60

Query: 61 AQLEVAKRQALVYSLYA 78
            L V +RQ  +  LY+
Sbjct: 61 RDLGVIRRQVHIGQLYS 77

BLAST of CcUC01G016140 vs. ExPASy Swiss-Prot
Match: Q8K215 (LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-08
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGK 60
          MA  SR++VL L+R+++R ++ F  YN R Y  RR  DAFREN+ + D   I +     K
Sbjct: 1  MAASSRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQALVYSLYA 78
            LE+ +RQ  +  LY+
Sbjct: 61 RDLEIIRRQVHIGQLYS 77

BLAST of CcUC01G016140 vs. ExPASy Swiss-Prot
Match: B5XD90 (LYR motif-containing protein 4B OS=Salmo salar OX=8030 GN=lyrm4b PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 28/79 (35.44%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 7  SEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLEVA 66
          ++VLSL+R L++ + +FP YN R Y  RR  DAFR N+++ D   +      G+  L++ 
Sbjct: 6  AQVLSLYRKLMKESNKFPSYNYRTYALRRVQDAFRANRSVEDPKMVEQLLNQGRDNLDMI 65

Query: 67 KRQALVYSLYAPKAKSIMD 86
          +RQ  +  +Y P  K+I++
Sbjct: 66 RRQVAIGKMY-PTQKTIVE 83

BLAST of CcUC01G016140 vs. ExPASy Swiss-Prot
Match: Q0VCG0 (LYR motif-containing protein 4 OS=Bos taurus OX=9913 GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-07
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGK 60
          MA  SR++VL L+R++LR +++F  YN R Y  RR  DAFREN+ + D   I +     K
Sbjct: 1  MAASSRAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQALVYSLYA 78
            L + +RQ  +  +Y+
Sbjct: 61 RDLGIIRRQVHIGQMYS 77

BLAST of CcUC01G016140 vs. ExPASy TrEMBL
Match: A0A0A0LST7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039010 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.7e-34
Identity = 79/87 (90.80%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGK 60
          MATPS SE+LSLFRSLLRTARQFPDYNIREY KRRTID+FRENQTLSDASSISS YAGG+
Sbjct: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60

Query: 61 AQLEVAKRQALVYSLYAPKAKSIMDVN 88
          AQLEVAKRQA+VYSLYAPK KSIMDVN
Sbjct: 61 AQLEVAKRQAIVYSLYAPKVKSIMDVN 87

BLAST of CcUC01G016140 vs. ExPASy TrEMBL
Match: A0A6J1C8A4 (LYR motif-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111008892 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.8e-33
Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 0

Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGK 60
          MATPSRSE+LSLFRSLLRTARQF DYNIREYTKRR IDAFREN++LSD SSISSAYAGGK
Sbjct: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60

Query: 61 AQLEVAKRQALVYSLYAPKAKSIMDVNL 89
          AQLEVAKRQALVYSLYAPK KSIMDV L
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVKL 88

BLAST of CcUC01G016140 vs. ExPASy TrEMBL
Match: A0A251UU63 (Putative complex 1 LYR protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0157171 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.6e-29
Identity = 68/86 (79.07%), Postives = 82/86 (95.35%), Query Frame = 0

Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGK 60
          MATPSRSE+L+LFRSLLR+ARQFPDYNIREYTKRRTIDAFR N+TLS+ SSI++A++ G+
Sbjct: 1  MATPSRSEILTLFRSLLRSARQFPDYNIREYTKRRTIDAFRHNKTLSEPSSIAAAFSDGQ 60

Query: 61 AQLEVAKRQALVYSLYAPKAKSIMDV 87
          +QL+VAKRQA+VYSLYAPK KSIMD+
Sbjct: 61 SQLQVAKRQAVVYSLYAPKIKSIMDI 86

BLAST of CcUC01G016140 vs. ExPASy TrEMBL
Match: A0A1S3XFP4 (LYR motif-containing protein 4 OS=Nicotiana tabacum OX=4097 GN=LOC107764517 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.9e-28
Identity = 65/87 (74.71%), Postives = 80/87 (91.95%), Query Frame = 0

Query: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGK 60
          MA+PSR EVL+LFRSLL+TARQFPDYNIREYTKRRTID FR+N+ LSD S +++A++ G+
Sbjct: 1  MASPSRGEVLTLFRSLLKTARQFPDYNIREYTKRRTIDGFRQNKDLSDPSKVAAAFSEGR 60

Query: 61 AQLEVAKRQALVYSLYAPKAKSIMDVN 88
          AQLEVAKRQA+VYSLYAPK KS+M++N
Sbjct: 61 AQLEVAKRQAVVYSLYAPKVKSVMELN 87

BLAST of CcUC01G016140 vs. ExPASy TrEMBL
Match: A0A2J6KBZ0 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X22101 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.9e-28
Identity = 65/84 (77.38%), Postives = 80/84 (95.24%), Query Frame = 0

Query: 3  TPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQ 62
          TPSR+E+++LFRSLLR+ARQFPDYNIREYTKRRTIDAFR+N+TLS+ SSI++A+  GK+Q
Sbjct: 7  TPSRTEIIALFRSLLRSARQFPDYNIREYTKRRTIDAFRDNKTLSEPSSIAAAFTDGKSQ 66

Query: 63 LEVAKRQALVYSLYAPKAKSIMDV 87
          L+VAKRQA+VYSLYAPK KSIMD+
Sbjct: 67 LQVAKRQAVVYSLYAPKIKSIMDI 90

BLAST of CcUC01G016140 vs. TAIR 10
Match: AT5G61220.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 98.6 bits (244), Expect = 2.7e-21
Identity = 52/84 (61.90%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 5  SRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQTLSDASSISSAYAGGKAQLE 64
          S SEVLSL R+LLR  RQFPDYNIREY+KRRT+D FR N+ L+D S ++ AYA  K QL 
Sbjct: 3  SSSEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQLF 62

Query: 65 VAKRQALVYSLYAPKAKSIMDVNL 89
          VA+R   VY  Y PK K+IM+V L
Sbjct: 63 VAERVLKVYLAYPPKTKNIMEVKL 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038894896.11.6e-3697.73LYR motif-containing protein 4 [Benincasa hispida][more]
KAG6607477.14.4e-3491.95LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] ... [more]
KGN64034.19.8e-3490.80hypothetical protein Csa_014098 [Cucumis sativus][more]
XP_022137452.13.7e-3390.91LYR motif-containing protein 4 [Momordica charantia][more]
KAF5807263.19.5e-2979.07putative complex 1 LYR protein [Helianthus annuus][more]
Match NameE-valueIdentityDescription
B5FZA82.7e-1045.45LYR motif-containing protein 4 OS=Taeniopygia guttata OX=59729 GN=LYRM4 PE=3 SV=... [more]
Q9HD341.5e-0842.86LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1[more]
Q8K2152.5e-0840.26LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1[more]
B5XD901.2e-0735.44LYR motif-containing protein 4B OS=Salmo salar OX=8030 GN=lyrm4b PE=3 SV=1[more]
Q0VCG01.6e-0738.96LYR motif-containing protein 4 OS=Bos taurus OX=9913 GN=LYRM4 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LST74.7e-3490.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039010 PE=4 SV=1[more]
A0A6J1C8A41.8e-3390.91LYR motif-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111008892 PE... [more]
A0A251UU634.6e-2979.07Putative complex 1 LYR protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g015... [more]
A0A1S3XFP43.9e-2874.71LYR motif-containing protein 4 OS=Nicotiana tabacum OX=4097 GN=LOC107764517 PE=4... [more]
A0A2J6KBZ03.9e-2877.38Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X22101 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G61220.12.7e-2161.90LYR family of Fe/S cluster biogenesis protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 8..64
e-value: 3.5E-19
score: 68.6
NoneNo IPR availablePANTHERPTHR47158:SF1OS08G0239000 PROTEINcoord: 1..87
NoneNo IPR availablePANTHERPTHR47158OS08G0239000 PROTEINcoord: 1..87
NoneNo IPR availableCDDcd20264Complex1_LYR_LYRM4coord: 8..76
e-value: 6.98989E-29
score: 96.4345

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC01G016140.1CcUC01G016140.1mRNA