CcUC01G015940 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC01G015940
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionmitochondrial import receptor subunit TOM5 homolog
LocationCicolChr01: 28777908 .. 28780174 (+)
RNA-Seq ExpressionCcUC01G015940
SyntenyCcUC01G015940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCTCCACACAGTCCGGGTCTACAAGCCGATTCATCGCGGCTTCAACCAAACCCCAAAACCTAAAACCCTAACGCCTCATACGCCTTCGCTCTCTGTAGTCCGCGCGAAAATGGCTGACGCTCCGAGTTCGGTGAAGAAGGTGAAGAATCTTCTCTCTTCCGGAACTGCAAATTCGCTGGAGACTGTGAAATCCTTTTTCAATTCTCAGGTTTATGACGAAGAAAAGTGGGCCTTGAACATGGTACTCTTCCGATCCTTTAAATTTCAATTCAAAATCTATGTCTTTCTTTTTAACCTGGAATTTTCGATCTCCCAAAATGTTCTAAGTGTGGTTTCTAGGATTGGACAACATCCGTTCTATCGTTTATATTGCATTATTAAGGCCTTGCGCTCTGCGCTCTGTTTGGTAGCTGAGATTTTTTTTTTTCATTTACGGCAACGGAATATAAAGTGTCGATCCTCTGATGGAAATGTGCATTTTTTAGTCTGACACGAGTAGATTTAAGTCGTACTCGAATTTGTTAAGCGTTATTACTGTTTTGAAATTGAAGAAATTTTAGGAGGAGATGTAAGTTTTCTCCGAGATCGGTTGCTAGAGAATATTTGGTTATGTTAAATTCAATAACTTGTTGGATGGGCTATTTGTGAAGTTGTATGTGTTTAGAGCAGTTAGCAGTCTCTTCACTTTATCTAAATTTGTTACGTTTTCCTTCTGGTTTGACACCTTGCTTTTTGTTGTCTCAAACTGCGATTATCATTCTTTTTCTCACTTTTGAAATTCCATAATAGAGGGAGAAAAAAGGAATTTTTTGGTTTTCGGTAATTACAAACGAGTGGTAGGTTTTCCTCTGCTTAGCACTTGTTTATTGGTTTGTCGAAGCTCGGAAGATTAAAGGGAAAATTGAACGTAATGGATTTGGTTGGTTCTCTAAACCATCTTATTTAAATTGATGTTTTAACTTAAGCCTTGGCCCTCACAATCTTACCTGAACAAGATCTGTTCTATAGGTTGTACAACTATGTCCTTCTAAGGACACAAGAATCAAAGTTTGGTGGATGAACTGCTGATTAAATTGCCAATGGGGCTTGGTCCGGCCGCTGCAGAGGATCGTTCTTGTTAGGCTAACAACCTGCTGGGATGGTTGCAAGGCGGTCTGACTTAAGCCATGGCCCTTAGCCTTTTTAGCCGATTACACCTTATTTTGGTCATTAGAGGCTTACTCCTGCGTGATAATGCATGAAGGCTACAATTATTTACACGTCTTGTGTGATGATTAAAAGAATGAAATTAATTTGCTCAAATCTTAAAGAATATAAAGGTTCCCTTGTGTATGGAATGCCAATACGTGAGTTGTGGCAAATGATTAAAAACATTGAAGGCGAAAAAAAGAAAACGTCAATCCTGATAATAGTGGTGATGTTAAGGATGATATTTTAGAACTTTCAATTAAGTGGGCAGGGGTGTTCATATATATTATATACACATTTCTATATAACTATTATATGTATGTTGCAACACTTAATGGATCATACAATCCTAGGATTTGTATAATTCTTTTTTAAATTAAATTTGAAACTTGCACCTATACCACCTTGAGGCCCATTCATGGCTCTTTGAGAGGAAAGGCCTCAAGTCTACCTTTAGCTTTTTATAATATTAATTCGATGTTAATAATTTGCAGAAAGTTCTATGATATGTTCTGTCTTTGTGAGTATTCGGTAATAGTTGCAAATGCATCATAACTATCTCATCTCTTGTGTTATTTGTTCCTACTGAACCTGAAACATAAAACTAAACATGATGGGCGTTTTTCCATTTCCAATAAGCATCATAGCTTTTCATCAAAAAGTAAGCATCACAGCTATCTCTGCAGGTATATTTGGACTTCGAATGCATGAAAAGAAAGAATGCTTTGGCATTAGGAAGAGGGATGCATGTCATCGAATTGGGTTGTAGTTGTAACAGAGCTACTTTACTGCCTTAATTCATTATTTGGGACTTGGGAAAATATTGCTTAACTAAGATTTTGTAGAGGAAAGTCATGCTTATGCAAATTCTTTTTTGCAACAAACATTCACTTCTAAGCAAAAGTATCTTTTTTTGTTTGTCTTTGAACATACCAACATTTCCTTGGTATGGCTGTATTTTATAAATAGAACTGAATCTCTCCTTTGTTGTTGCAGAAATTGCTTCGTGCTGCTGGGATGTTTGCAGGATCCATCCTTCTCATGCGGAATTATGGTGATCTGATGACAATATGA

mRNA sequence

ATGTTGCTCCACACAGTCCGGGTCTACAAGCCGATTCATCGCGGCTTCAACCAAACCCCAAAACCTAAAACCCTAACGCCTCATACGCCTTCGCTCTCTGTAGTCCGCGCGAAAATGGCTGACGCTCCGAGTTCGGTGAAGAAGGTGAAGAATCTTCTCTCTTCCGGAACTGCAAATTCGCTGGAGACTGTGAAATCCTTTTTCAATTCTCAGGTTTATGACGAAGAAAAGTGGGCCTTGAACATGAAATTGCTTCGTGCTGCTGGGATGTTTGCAGGATCCATCCTTCTCATGCGGAATTATGGTGATCTGATGACAATATGA

Coding sequence (CDS)

ATGTTGCTCCACACAGTCCGGGTCTACAAGCCGATTCATCGCGGCTTCAACCAAACCCCAAAACCTAAAACCCTAACGCCTCATACGCCTTCGCTCTCTGTAGTCCGCGCGAAAATGGCTGACGCTCCGAGTTCGGTGAAGAAGGTGAAGAATCTTCTCTCTTCCGGAACTGCAAATTCGCTGGAGACTGTGAAATCCTTTTTCAATTCTCAGGTTTATGACGAAGAAAAGTGGGCCTTGAACATGAAATTGCTTCGTGCTGCTGGGATGTTTGCAGGATCCATCCTTCTCATGCGGAATTATGGTGATCTGATGACAATATGA

Protein sequence

MLLHTVRVYKPIHRGFNQTPKPKTLTPHTPSLSVVRAKMADAPSSVKKVKNLLSSGTANSLETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLMRNYGDLMTI
Homology
[Close]
BLAST of CcUC01G015940 vs. NCBI nr
Match: XP_004137442.1 (mitochondrial import receptor subunit TOM5 homolog [Cucumis sativus] >XP_008451171.1 PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Cucumis melo] >TYJ98941.1 mitochondrial import receptor subunit TOM5-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 2.7e-25
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0 

Query: 39  MADAPSSVKKVKNLLSSGTANSLETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 98
           MAD  SSVKKVKNLL SGTANS+ETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1   MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 99  RNYGDLMTI 108
           RNYGDLMTI
Sbjct: 61  RNYGDLMTI 69

[Close]
BLAST of CcUC01G015940 vs. NCBI nr
Match: XP_038894051.1 (mitochondrial import receptor subunit TOM5 homolog [Benincasa hispida])

HSP 1 Score: 124.4 bits (311), Expect = 5.9e-25
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0 

Query: 39  MADAPSSVKKVKNLLSSGTANSLETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 98
           MADA SSV KVKN L SGTANS+ETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1   MADASSSVNKVKNFLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 99  RNYGDLMTI 108
           RNYGDLMTI
Sbjct: 61  RNYGDLMTI 69

[Close]
BLAST of CcUC01G015940 vs. NCBI nr
Match: KAG6572899.1 (Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012088.1 Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-23
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 39  MADAPSSVKKVKNLLSSGTANSLETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 98
           M DA SSVKKVKN + SGTANS+ETVKSFFNSQV+DEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1   MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 99  RNYGDLMTI 108
           RNYGDLM I
Sbjct: 61  RNYGDLMAI 69

[Close]
BLAST of CcUC01G015940 vs. NCBI nr
Match: XP_022924183.1 (mitochondrial import receptor subunit TOM5 homolog [Cucurbita moschata] >XP_023001126.1 mitochondrial import receptor subunit TOM5 homolog [Cucurbita maxima] >XP_023520288.1 mitochondrial import receptor subunit TOM5 homolog [Cucurbita pepo subsp. pepo] >KAG6584406.1 Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019992.1 Mitochondrial import receptor subunit TOM5-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 39  MADAPSSVKKVKNLLSSGTANSLETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 98
           M DA SSVKKVKN L SGTANS+ETVKSF+NSQV+DEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1   MVDASSSVKKVKNFLFSGTANSVETVKSFYNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 99  RNYGDLMTI 108
           RNYGDLM I
Sbjct: 61  RNYGDLMAI 69

[Close]
BLAST of CcUC01G015940 vs. NCBI nr
Match: XP_022137624.1 (mitochondrial import receptor subunit TOM5 homolog [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-22
Identity = 57/69 (82.61%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 39  MADAPSSVKKVKNLLSSGTANSLETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 98
           MADA SS+KKVKN + SGT+NS+ETV+SF NSQ++DEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1   MADASSSMKKVKNFICSGTSNSVETVRSFLNSQIHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 99  RNYGDLMTI 108
           RNYGDLM I
Sbjct: 61  RNYGDLMAI 69

[Close]
BLAST of CcUC01G015940 vs. ExPASy Swiss-Prot
Match: Q9SD80 (Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana OX=3702 GN=TOM5 PE=1 SV=3)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-11
Identity = 30/48 (62.50%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 60  SLETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLMRNYGDLMTI 108
           S+E +K+ ++S+V+DE+KWA+NMKLLRA GMFAG ++LMR+YGDLM +
Sbjct: 7   SIEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLMGV 54

[Close]
BLAST of CcUC01G015940 vs. ExPASy TrEMBL
Match: A0A5D3BJP0 (Mitochondrial import receptor subunit TOM5-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001420 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0 

Query: 39  MADAPSSVKKVKNLLSSGTANSLETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 98
           MAD  SSVKKVKNLL SGTANS+ETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1   MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 99  RNYGDLMTI 108
           RNYGDLMTI
Sbjct: 61  RNYGDLMTI 69

[Close]
BLAST of CcUC01G015940 vs. ExPASy TrEMBL
Match: A0A0A0LSV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039240 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0 

Query: 39  MADAPSSVKKVKNLLSSGTANSLETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 98
           MAD  SSVKKVKNLL SGTANS+ETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1   MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 99  RNYGDLMTI 108
           RNYGDLMTI
Sbjct: 61  RNYGDLMTI 69

[Close]
BLAST of CcUC01G015940 vs. ExPASy TrEMBL
Match: A0A1S3BQV4 (mitochondrial import receptor subunit TOM5 homolog OS=Cucumis melo OX=3656 GN=LOC103492520 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0 

Query: 39  MADAPSSVKKVKNLLSSGTANSLETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 98
           MAD  SSVKKVKNLL SGTANS+ETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1   MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 99  RNYGDLMTI 108
           RNYGDLMTI
Sbjct: 61  RNYGDLMTI 69

[Close]
BLAST of CcUC01G015940 vs. ExPASy TrEMBL
Match: A0A6J1KHR6 (mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita maxima OX=3661 GN=LOC111495362 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.0e-24
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 39  MADAPSSVKKVKNLLSSGTANSLETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 98
           M DA SSVKKVKN L SGTANS+ETVKSF+NSQV+DEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1   MVDASSSVKKVKNFLFSGTANSVETVKSFYNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 99  RNYGDLMTI 108
           RNYGDLM I
Sbjct: 61  RNYGDLMAI 69

[Close]
BLAST of CcUC01G015940 vs. ExPASy TrEMBL
Match: A0A6J1EBN7 (mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita moschata OX=3662 GN=LOC111431705 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.0e-24
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 39  MADAPSSVKKVKNLLSSGTANSLETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 98
           M DA SSVKKVKN L SGTANS+ETVKSF+NSQV+DEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1   MVDASSSVKKVKNFLFSGTANSVETVKSFYNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 99  RNYGDLMTI 108
           RNYGDLM I
Sbjct: 61  RNYGDLMAI 69

[Close]
BLAST of CcUC01G015940 vs. TAIR 10
Match: AT5G08040.1 (mitochondrial import receptor subunit TOM5 homolog )

HSP 1 Score: 70.5 bits (171), Expect = 9.4e-13
Identity = 30/48 (62.50%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 60  SLETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLMRNYGDLMTI 108
           S+E +K+ ++S+V+DE+KWA+NMKLLRA GMFAG ++LMR+YGDLM +
Sbjct: 7   SIEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLMGV 54

The following BLAST results are available for this feature:
BLAST of CcUC01G015940 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004137442.12.7e-2594.20mitochondrial import receptor subunit TOM5 homolog [Cucumis sativus] >XP_0084511... [more]
XP_038894051.15.9e-2592.75mitochondrial import receptor subunit TOM5 homolog [Benincasa hispida][more]
KAG6572899.11.1e-2388.41Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argy... [more]
XP_022924183.11.5e-2388.41mitochondrial import receptor subunit TOM5 homolog [Cucurbita moschata] >XP_0230... [more]
XP_022137624.12.1e-2282.61mitochondrial import receptor subunit TOM5 homolog [Momordica charantia][more]
BLAST of CcUC01G015940 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SD801.3e-1162.50Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana OX=37... [more]
BLAST of CcUC01G015940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BJP01.3e-2594.20Mitochondrial import receptor subunit TOM5-like protein OS=Cucumis melo var. mak... [more]
A0A0A0LSV31.3e-2594.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039240 PE=4 SV=1[more]
A0A1S3BQV41.3e-2594.20mitochondrial import receptor subunit TOM5 homolog OS=Cucumis melo OX=3656 GN=LO... [more]
A0A6J1KHR67.0e-2488.41mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1EBN77.0e-2488.41mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita moschata OX=3662... [more]
BLAST of CcUC01G015940 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G08040.19.4e-1362.50mitochondrial import receptor subunit TOM5 homolog [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034553Mitochondrial import receptor subunit TOM5 homologue, viridiplantaePANTHERPTHR37251MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOGcoord: 58..107
NoneNo IPR availablePANTHERPTHR37251:SF1MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOGcoord: 58..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC01G015940.1CcUC01G015940.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005742 mitochondrial outer membrane translocase complex