CcUC01G015840 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC01G015840
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Aluminium induced protein with YGL and LRDR motifs
Location	CicolChr01: 28679452 .. 28681309 (+)
RNA-Seq Expression	CcUC01G015840
Synteny	CcUC01G015840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATCCCAAGCTTCAATCCAAGTGACCATGGCATCTGCAAGCTTGGTGAAGTATTCGTCGATGCCACCGAGCTTTTCTTTAACTTGCTTGGAGAGTTCAATGTAGCATTGCTGCACTGTGGTGCAATCTTTTGGAAGTTTAACAGCTTGGAAAAATGGTATCAGATCTTCTTGCCAATAGATTCCCTTGTATTCTTTCTTCAGGTTCACAAATGGGTTGCTTGCTTTGCTGTGCCAAATGTAGGGCAATCCCGTCTTCACTCCATATCCAAGATGGTCACATATAACCTATTACACAAGATCCCACAGTCCAAATTCAATCAGCTTCGATCGAGGAATTGCAAACCATGGGAAAACAAGAATGAAAATGACAGAAAGAATCATCTCATCATGGAATGACAATATACCTTCATGCACCAGCCAGCCCACATATCGTCGTAGCGGCCGATTGGCTGACCATCACCCATGAGACCGAAATACATCGCTGGGCCGATCAGATTACGGTCAAATGCCAGATTCATTCCACACATGGGGAAGAGGGTTGACTTTGGAATTGTCAAGACTGCATCTACATACCTATGGTATAGCTAAATAATCAACTTCTGATAATTGGGAATGTGGATGCTGAATTCTAATGTAATGCAAAACGTTTGTACCTCTTATTTCTCTCCAGAGGCTTCACGAGCTGGGTGGGTGCATCATAATCCGGGATGTTGAGCCACAGGCCATGAGACACTGCGGTCGGAACACCCTCCCGGAGACTAAACGGATATCCACGGACGAAGTCAGCGCCCTCACGGTAGGGATCGTACAAGGTATTGAAGAAATGTGGTGTAGCCGGGGTCAGAAGGTTCTTGATGTGCTGCTCAAGTGCATTGATGTCCTTGCCTGATGGATCCTTAGCAACCTGCAAGATCAAAACCAAGAACAATCCTCAGATCCAGAAGGAACGATCTCATCACTCATTCCTGATACTATTCTAGACAAAACAAAACAGAATTTCTTTTCAACATCAATATCCCCATATAGAACTAAGAAACCTACATGGATCCACAAAGCCAGACCTTGTAGATCATGGATCCGAAAGCTGAACTGACAGAATCTTAGCTCTAGCAATCCGAGATCACTTTGCTTGCCTAATTATGCAGCAGATCCACGAGTTTAGCCAACTACATTCGAAAATGCTGAACTGATTTGTGATCTCTGGTTAGTATTCAGACAGATCTACGACCAACGAGCGGATTCTTTTGCTTTTCAAAGCATGCAAATCCACAAATCCACCACTGACACCATGCATGTAGTTCATATATACAACAATCTAAAACTCAACCAACAGCACTAAAACAGGGGAAGGCAAGATCGACATTACCAAGACTAACTATCAAAAACCCAAATCAGATAAGATTCAAAATTCAAAACAGGGGAAAGAGAGAAGAGGAAGAACAAAACACAAGAATCCCAAATAAAGAATTGGGGAAAGACTTACAAAGCAGTCATCATCAATGGTGTAGATATACTTCTTCTTGGAAACCATGTAGCCAAAGCAGCGGCAAGCAGAATCCTTAAAGGAAATGCAAGAAGCTTTAGGACCCAGAATCCGATTGATGTCATTACGATTGTAGAGTTCATAATCAAAACCTTCAGGAACCTTAATGACCTTTGAAGGGTCACCGTCCTGAACAATGATGAGATGGTAAGGCTGGAAAAAGGGCCTCCACATCTCAAGAAAATCGAGGTTTCGGATGGTGGGTATGACGATATCGAGCTCATCTTTCAACAGGGGAACTGGAGAAACTTTGGAATCCGCCATTTTGAAGTGGAGAGAGATGAAATGAAGCTGTGGGGTTTGGAAGATTGA

mRNA sequence

CTCATCCCAAGCTTCAATCCAAGTGACCATGGCATCTGCAAGCTTGGTGAAGTATTCGTCGATGCCACCGAGCTTTTCTTTAACTTGCTTGGAGAGTTCAATGTAGCATTGCTGCACTGTGGTGCAATCTTTTGGAAGTTTAACAGCTTGGAAAAATGGTATCAGATCTTCTTGCCAATAGATTCCCTTGTTCACAAATGGGTTGCTTGCTTTGCTGTGCCAAATGTAGGGCAATCCCGTCTTCACTCCATATCCAAGATGAAAGAATCATCTCATCATGGAATGACAATATACCTTCATGCACCAGCCAGCCCACATATCGTCGTAGCGGCCGATTGGCTGACCATCACCCATGAGACCGAAATACATCGCTGGGCCGATCAGATTACGAGGCTTCACGAGCTGGGTGGGTGCATCATAATCCGGGATGTTGAGCCACAGGCCATGAGACACTGCGGTCGGAACACCCTCCCGGAGACTAAACGGATATCCACGGACGAAGTCAGCGCCCTCACGGTAGGGATCGTACAAGGTATTGAAGAAATGTGGTGTAGCCGGGGTCAGAAGATCTACGACCAACGAGCGGATTCTTTTGCTTTTCAAAGCATGCAAATCCACAAATCCACCACTGACACCATGCATCCAAAGCAGCGGCAAGCAGAATCCTTAAAGGAAATGCAAGAAGCTTTAGGACCCAGAATCCGATTGATGGTCACCGTCCTGAACAATGATGAGATGGTAAGGCTGGAAAAAGGGCCTCCACATCTCAAGAAAATCGAGGTTTCGGATGGTGGGTATGACGATATCGAGCTCATCTTTCAACAGGGGAACTGGAGAAACTTTGGAATCCGCCATTTTGAAGTGGAGAGAGATGAAATGAAGCTGTGGGGTTTGGAAGATTGA

Coding sequence (CDS)

CTCATCCCAAGCTTCAATCCAAGTGACCATGGCATCTGCAAGCTTGGTGAAGTATTCGTCGATGCCACCGAGCTTTTCTTTAACTTGCTTGGAGAGTTCAATGTAGCATTGCTGCACTGTGGTGCAATCTTTTGGAAGTTTAACAGCTTGGAAAAATGGTATCAGATCTTCTTGCCAATAGATTCCCTTGTTCACAAATGGGTTGCTTGCTTTGCTGTGCCAAATGTAGGGCAATCCCGTCTTCACTCCATATCCAAGATGAAAGAATCATCTCATCATGGAATGACAATATACCTTCATGCACCAGCCAGCCCACATATCGTCGTAGCGGCCGATTGGCTGACCATCACCCATGAGACCGAAATACATCGCTGGGCCGATCAGATTACGAGGCTTCACGAGCTGGGTGGGTGCATCATAATCCGGGATGTTGAGCCACAGGCCATGAGACACTGCGGTCGGAACACCCTCCCGGAGACTAAACGGATATCCACGGACGAAGTCAGCGCCCTCACGGTAGGGATCGTACAAGGTATTGAAGAAATGTGGTGTAGCCGGGGTCAGAAGATCTACGACCAACGAGCGGATTCTTTTGCTTTTCAAAGCATGCAAATCCACAAATCCACCACTGACACCATGCATCCAAAGCAGCGGCAAGCAGAATCCTTAAAGGAAATGCAAGAAGCTTTAGGACCCAGAATCCGATTGATGGTCACCGTCCTGAACAATGATGAGATGGTAAGGCTGGAAAAAGGGCCTCCACATCTCAAGAAAATCGAGGTTTCGGATGGTGGGTATGACGATATCGAGCTCATCTTTCAACAGGGGAACTGGAGAAACTTTGGAATCCGCCATTTTGAAGTGGAGAGAGATGAAATGAAGCTGTGGGGTTTGGAAGATTGA

Protein sequence

LIPSFNPSDHGICKLGEVFVDATELFFNLLGEFNVALLHCGAIFWKFNSLEKWYQIFLPIDSLVHKWVACFAVPNVGQSRLHSISKMKESSHHGMTIYLHAPASPHIVVAADWLTITHETEIHRWADQITRLHELGGCIIIRDVEPQAMRHCGRNTLPETKRISTDEVSALTVGIVQGIEEMWCSRGQKIYDQRADSFAFQSMQIHKSTTDTMHPKQRQAESLKEMQEALGPRIRLMVTVLNNDEMVRLEKGPPHLKKIEVSDGGYDDIELIFQQGNWRNFGIRHFEVERDEMKLWGLED

Homology

[Close]

BLAST of CcUC01G015840 vs. NCBI nr
Match: KVI09064.1 (hypothetical protein Ccrd_012560 [Cynara cardunculus var. scolymus])

HSP 1 Score: 95.9 bits (237), Expect = 6.3e-16
Identity = 68/195 (34.87%), Postives = 97/195 (49.74%), Query Frame = 0


Query: 131 RLHELGGCIIIRDVEPQAMRHCGRNTLPETKRISTDEVSALTVGIVQGIEEMWC------ 190
           RL +L   III +VEPQAMR+ G +TL + +R++TDE+S +   +++GI+E+ C      
Sbjct: 13  RLDKLSWGIIIWNVEPQAMRNRGGDTLAKAERVATDEISTIGERVIKGIKEIGCGWVKKK 72

Query: 191 ------------------SRGQKIYDQ---RADSFAFQSMQIHKSTTDTMHPKQRQAESL 250
                             SR    Y       +        + K+TT  +   +R A SL
Sbjct: 73  TKPHVKQNIKQLEDTMFTSRNGTTYKAVIINGEDILLLGNHVTKATTSGI--LERDARSL 132

Query: 251 KEMQEALGPRIRLMVT-------------VLNNDEMVRLEKGPPHLKKIEVSDGGYDDIE 286
           +         I  +VT             +LN+D+M+ LE+GPPH KKIEVSDGGYDDIE
Sbjct: 133 RTQNLVNVVTIVEIVTETTGDLDGFGRIAILNDDQMIGLEEGPPHFKKIEVSDGGYDDIE 192

[Close]

BLAST of CcUC01G015840 vs. NCBI nr
Match: KVH99295.1 (hypothetical protein Ccrd_022478 [Cynara cardunculus var. scolymus])

HSP 1 Score: 87.8 bits (216), Expect = 1.7e-13
Identity = 56/173 (32.37%), Postives = 94/173 (54.34%), Query Frame = 0


Query: 129 ITRLHELGGCIIIRDVEPQAMRHCGRNTLPETKRISTDEVSALTVGIVQGIEE---MWCS 188
           +TRL +L G III +V+P+A+R+ GR++L +T+R+ST+++   ++ I++G+EE    W  
Sbjct: 47  LTRLDKLSGGIIIGNVKPEAVRNGGRHSLTKTERVSTNKIRTFSIWIIEGVEEKRSRWRQ 106

Query: 189 RGQKIYDQRA-----DSFAFQSMQIHKSTT------DTMHPKQRQAESLKEMQEALGPRI 248
              +    +A     +        I ++TT      D    +   +  +  + E +    
Sbjct: 107 ERNREDTYKAIIVNGEDILLLGNHITEATTSRILKGDARRFRTENSVDIITIVEFIIETF 166

Query: 249 RLM-----VTVLNNDEMVRLEKGPPHLKKIEVSDGGYDDIELIFQQGNWRNFG 283
                   + +L +D+MV LE+ PPHL++IEVSD G DD+E IFQQ  WR  G
Sbjct: 167 GYFDDFRRIAILYDDQMVGLEEWPPHLEEIEVSDCGNDDVEFIFQQWCWRYRG 219

[Close]

BLAST of CcUC01G015840 vs. NCBI nr
Match: ACU18685.1 (unknown, partial [Glycine max])

HSP 1 Score: 84.3 bits (207), Expect = 1.9e-12
Identity = 58/199 (29.15%), Postives = 98/199 (49.25%), Query Frame = 0


Query: 125 WADQ-------ITRLHELGGCIIIRDVEPQAMRHCGRNTLPETKRISTDEVSALTVGIVQ 184
           W++Q       + RLH+L   II+ DVEP++M     +T  +T+R+ST+++   + G+++
Sbjct: 16  WSEQRPHTSVSLERLHKLCWSIIVWDVEPKSMGDSSWHTFTKTERVSTNKICTFSEGVIK 75

Query: 185 GIEEMWCSRGQKIYD------QRADSFAFQSMQIHKSTTDTMHPKQRQAESLKE---MQE 244
           GIEE      QK+++       R   +   +  +  +  D +      AE+        +
Sbjct: 76  GIEEQGSGWTQKVFNMLLECIDRFSRWIIGNKAVIINGEDVLLLGHHVAEAATRGVLEGD 135

Query: 245 ALGPRIRLM----------------------VTVLNNDEMVRLEKGPPHLKKIEVSDGGY 286
           A GP  + +                      VT+LNND+MVRL++ PPHLKK++V  GG 
Sbjct: 136 ARGPWTQKLVDVIAVVELIVKARRNLDGFGGVTILNNDQMVRLKEWPPHLKKVKVPYGGD 195

[Close]

BLAST of CcUC01G015840 vs. NCBI nr
Match: GER31874.1 (aluminium induced protein with YGL and LRDR motifs [Striga asiatica])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-11
Identity = 47/129 (36.43%), Postives = 66/129 (51.16%), Query Frame = 0


Query: 1   LIPSFNPSDHGICKLGEVFVDATELFFNLLGEFNVALLHCGAIFWKFNSLEKWYQIFLPI 60
           L+PS NP  HG+ +L EV ++  +   +LLG+ NVA+L C A F K              
Sbjct: 32  LVPSLNPRHHGLRQLCEVRINGRKFVLDLLGQLNVAVLDCCAFFRK-------------- 91

Query: 61  DSLVHKWVACFAVPNVGQSRLHSISKMKESSHHGMTIYLHAPASPHIVVAADWLTITHET 120
            S    W+ C            +I +   SS   + +YL APASPH+V++ DWLTI HE 
Sbjct: 92  SSQTGCWLCC------------AICRANLSS---LPVYLGAPASPHVVISPDWLTIAHEP 131

Query: 121 EIHRWADQI 130
           E+H   +QI
Sbjct: 152 EVHSGPNQI 131

[Close]

BLAST of CcUC01G015840 vs. NCBI nr
Match: GER50472.1 (zinc finger nuclease 2 [Striga asiatica])

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-04
Identity = 24/39 (61.54%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 238 VTVLNNDEMVRLEKGPPHLKKIEVSDGGYDDIELIFQQG 277
           V VL++D++V LEK PPHL+KIEV + GYDD+EL+ Q+G
Sbjct: 55  VAVLDDDQVVLLEKRPPHLEKIEVPNRGYDDVELVLQEG 93

[Close]

BLAST of CcUC01G015840 vs. ExPASy TrEMBL
Match: A0A103YH89 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_012560 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.1e-16
Identity = 68/195 (34.87%), Postives = 97/195 (49.74%), Query Frame = 0


Query: 131 RLHELGGCIIIRDVEPQAMRHCGRNTLPETKRISTDEVSALTVGIVQGIEEMWC------ 190
           RL +L   III +VEPQAMR+ G +TL + +R++TDE+S +   +++GI+E+ C      
Sbjct: 13  RLDKLSWGIIIWNVEPQAMRNRGGDTLAKAERVATDEISTIGERVIKGIKEIGCGWVKKK 72

Query: 191 ------------------SRGQKIYDQ---RADSFAFQSMQIHKSTTDTMHPKQRQAESL 250
                             SR    Y       +        + K+TT  +   +R A SL
Sbjct: 73  TKPHVKQNIKQLEDTMFTSRNGTTYKAVIINGEDILLLGNHVTKATTSGI--LERDARSL 132

Query: 251 KEMQEALGPRIRLMVT-------------VLNNDEMVRLEKGPPHLKKIEVSDGGYDDIE 286
           +         I  +VT             +LN+D+M+ LE+GPPH KKIEVSDGGYDDIE
Sbjct: 133 RTQNLVNVVTIVEIVTETTGDLDGFGRIAILNDDQMIGLEEGPPHFKKIEVSDGGYDDIE 192

[Close]

BLAST of CcUC01G015840 vs. ExPASy TrEMBL
Match: A0A124SE87 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_022478 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.3e-14
Identity = 56/173 (32.37%), Postives = 94/173 (54.34%), Query Frame = 0


Query: 129 ITRLHELGGCIIIRDVEPQAMRHCGRNTLPETKRISTDEVSALTVGIVQGIEE---MWCS 188
           +TRL +L G III +V+P+A+R+ GR++L +T+R+ST+++   ++ I++G+EE    W  
Sbjct: 47  LTRLDKLSGGIIIGNVKPEAVRNGGRHSLTKTERVSTNKIRTFSIWIIEGVEEKRSRWRQ 106

Query: 189 RGQKIYDQRA-----DSFAFQSMQIHKSTT------DTMHPKQRQAESLKEMQEALGPRI 248
              +    +A     +        I ++TT      D    +   +  +  + E +    
Sbjct: 107 ERNREDTYKAIIVNGEDILLLGNHITEATTSRILKGDARRFRTENSVDIITIVEFIIETF 166

Query: 249 RLM-----VTVLNNDEMVRLEKGPPHLKKIEVSDGGYDDIELIFQQGNWRNFG 283
                   + +L +D+MV LE+ PPHL++IEVSD G DD+E IFQQ  WR  G
Sbjct: 167 GYFDDFRRIAILYDDQMVGLEEWPPHLEEIEVSDCGNDDVEFIFQQWCWRYRG 219

[Close]

BLAST of CcUC01G015840 vs. ExPASy TrEMBL
Match: C6TA33 (Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.2e-13
Identity = 58/199 (29.15%), Postives = 98/199 (49.25%), Query Frame = 0


Query: 125 WADQ-------ITRLHELGGCIIIRDVEPQAMRHCGRNTLPETKRISTDEVSALTVGIVQ 184
           W++Q       + RLH+L   II+ DVEP++M     +T  +T+R+ST+++   + G+++
Sbjct: 16  WSEQRPHTSVSLERLHKLCWSIIVWDVEPKSMGDSSWHTFTKTERVSTNKICTFSEGVIK 75

Query: 185 GIEEMWCSRGQKIYD------QRADSFAFQSMQIHKSTTDTMHPKQRQAESLKE---MQE 244
           GIEE      QK+++       R   +   +  +  +  D +      AE+        +
Sbjct: 76  GIEEQGSGWTQKVFNMLLECIDRFSRWIIGNKAVIINGEDVLLLGHHVAEAATRGVLEGD 135

Query: 245 ALGPRIRLM----------------------VTVLNNDEMVRLEKGPPHLKKIEVSDGGY 286
           A GP  + +                      VT+LNND+MVRL++ PPHLKK++V  GG 
Sbjct: 136 ARGPWTQKLVDVIAVVELIVKARRNLDGFGGVTILNNDQMVRLKEWPPHLKKVKVPYGGD 195

[Close]

BLAST of CcUC01G015840 vs. ExPASy TrEMBL
Match: A0A5A7PGM7 (Aluminium induced protein with YGL and LRDR motifs OS=Striga asiatica OX=4170 GN=STAS_07912 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.8e-12
Identity = 47/129 (36.43%), Postives = 66/129 (51.16%), Query Frame = 0


Query: 1   LIPSFNPSDHGICKLGEVFVDATELFFNLLGEFNVALLHCGAIFWKFNSLEKWYQIFLPI 60
           L+PS NP  HG+ +L EV ++  +   +LLG+ NVA+L C A F K              
Sbjct: 32  LVPSLNPRHHGLRQLCEVRINGRKFVLDLLGQLNVAVLDCCAFFRK-------------- 91

Query: 61  DSLVHKWVACFAVPNVGQSRLHSISKMKESSHHGMTIYLHAPASPHIVVAADWLTITHET 120
            S    W+ C            +I +   SS   + +YL APASPH+V++ DWLTI HE 
Sbjct: 92  SSQTGCWLCC------------AICRANLSS---LPVYLGAPASPHVVISPDWLTIAHEP 131

Query: 121 EIHRWADQI 130
           E+H   +QI
Sbjct: 152 EVHSGPNQI 131

[Close]

BLAST of CcUC01G015840 vs. ExPASy TrEMBL
Match: A0A7C8ZLR6 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-11
Identity = 40/112 (35.71%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 95  MTIYLHAPASPHIVVAADWLTITHETEIHRWADQIT------------------------ 154
           +T YL AP+SPHIV+ ++ L  TH+ ++H   +Q+                         
Sbjct: 2   ITDYLRAPSSPHIVITSNGLAFTHKAKVHGRTNQVAVESQIHTTHGEQCALRDGQDCIHI 61

Query: 155 ------RLHELGGCIIIRDVEPQAMRHCGRNTLPETKRISTDEVSALTVGIV 177
                  L +LGGCI+IRD+EPQ M   GRNTL E +R+STD+V+  T+ ++
Sbjct: 62  PSVPLKGLDKLGGCIVIRDIEPQTMGDRGRNTLTEAERVSTDKVNPFTIWVI 113

The following BLAST results are available for this feature:

BLAST of CcUC01G015840 vs. NCBI nr


Match Name	E-value	Identity	Description
KVI09064.1	6.3e-16	34.87	hypothetical protein Ccrd_012560 [Cynara cardunculus var. scolymus]	[more]
KVH99295.1	1.7e-13	32.37	hypothetical protein Ccrd_022478 [Cynara cardunculus var. scolymus]	[more]
ACU18685.1	1.9e-12	29.15	unknown, partial [Glycine max]	[more]
GER31874.1	1.6e-11	36.43	aluminium induced protein with YGL and LRDR motifs [Striga asiatica]	[more]
GER50472.1	2.5e-04	61.54	zinc finger nuclease 2 [Striga asiatica]	[more]

BLAST of CcUC01G015840 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC01G015840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A103YH89	3.1e-16	34.87	Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_012...	[more]
A0A124SE87	8.3e-14	32.37	Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_022...	[more]
C6TA33	9.2e-13	29.15	Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
A0A5A7PGM7	7.8e-12	36.43	Aluminium induced protein with YGL and LRDR motifs OS=Striga asiatica OX=4170 GN...	[more]
A0A7C8ZLR6	3.9e-11	35.71	Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1	[more]

BLAST of CcUC01G015840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC01G015840.1	CcUC01G015840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0016740	transferase activity