CcUC01G015690 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC01G015690
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	GTPase IMAP family member 1, putative
Location	CicolChr01: 28537445 .. 28537912 (-)
RNA-Seq Expression	CcUC01G015690
Synteny	CcUC01G015690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTGTTGGGTTGGAAATTGGATTAGGAAGGCATGTAGTTTATGGGAATCATTAAAGGAAGAAGGCGGTGGCCGGAAACTGGAGGCGGCGGCGGAGATGGTGGAGGAATGGAAGGAAATGATAGTAGCATTGTGTGTGTCATCGGCAATAGGGATAGCAACAGTGTCTGTTCAAATAGAAACAAAACTCCCAAATACATTTCAGTTTCTATCGGTTGTCGTGTTGTTGTGTTTTGGATTTGTGGGTTTTGGAAAAATGACCAAATCCATTAATTTCCAAAAAGTTTCAAAGATTTTGTATTGTGTGGGAGGATTTTTGGGGGTGACAGCCTTTTTCATAGCCACTGCCATTCCATATTCCCCATATTTTCAGTTCATCATTTTCCTCCTTTACTTGATCTTTTGCTTCGTTTCCATGCTAATCACCACCACCCACAACCCTTCTTCTTCCTCCACTTCCCTTTGA

mRNA sequence

ATGCGTTGTTGGGTTGGAAATTGGATTAGGAAGGCATGTAGTTTATGGGAATCATTAAAGGAAGAAGGCGGTGGCCGGAAACTGGAGGCGGCGGCGGAGATGGTGGAGGAATGGAAGGAAATGATAGTAGCATTGTGTGTGTCATCGGCAATAGGGATAGCAACAGTGTCTGTTCAAATAGAAACAAAACTCCCAAATACATTTCAGTTTCTATCGGTTGTCGTGTTGTTGTGTTTTGGATTTGTGGGTTTTGGAAAAATGACCAAATCCATTAATTTCCAAAAAGTTTCAAAGATTTTGTATTGTGTGGGAGGATTTTTGGGGGTGACAGCCTTTTTCATAGCCACTGCCATTCCATATTCCCCATATTTTCAGTTCATCATTTTCCTCCTTTACTTGATCTTTTGCTTCGTTTCCATGCTAATCACCACCACCCACAACCCTTCTTCTTCCTCCACTTCCCTTTGA

Coding sequence (CDS)

ATGCGTTGTTGGGTTGGAAATTGGATTAGGAAGGCATGTAGTTTATGGGAATCATTAAAGGAAGAAGGCGGTGGCCGGAAACTGGAGGCGGCGGCGGAGATGGTGGAGGAATGGAAGGAAATGATAGTAGCATTGTGTGTGTCATCGGCAATAGGGATAGCAACAGTGTCTGTTCAAATAGAAACAAAACTCCCAAATACATTTCAGTTTCTATCGGTTGTCGTGTTGTTGTGTTTTGGATTTGTGGGTTTTGGAAAAATGACCAAATCCATTAATTTCCAAAAAGTTTCAAAGATTTTGTATTGTGTGGGAGGATTTTTGGGGGTGACAGCCTTTTTCATAGCCACTGCCATTCCATATTCCCCATATTTTCAGTTCATCATTTTCCTCCTTTACTTGATCTTTTGCTTCGTTTCCATGCTAATCACCACCACCCACAACCCTTCTTCTTCCTCCACTTCCCTTTGA

Protein sequence

MRCWVGNWIRKACSLWESLKEEGGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVTAFFIATAIPYSPYFQFIIFLLYLIFCFVSMLITTTHNPSSSSTSL

Homology

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BLAST of CcUC01G015690 vs. NCBI nr
Match: KAG6572911.1 (hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164.1 bits (414), Expect = 9.7e-37
Identity = 102/156 (65.38%), Postives = 115/156 (73.72%), Query Frame = 0


Query: 4   WVGNWIRKACSLWESLKE--EGGG------RKLEAAAEMVEEWKEMIVALCVSSAIGIAT 63
           W  N I KA  LWE L++  EGGG          AAAEMVEEWK+MIVA CVSSAI IAT
Sbjct: 3   WFENCI-KARRLWE-LEDGVEGGGGGGGPSEAAVAAAEMVEEWKDMIVAFCVSSAIAIAT 62

Query: 64  VSVQIETKLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVTAFFIA 123
           VSVQIE KLP  F FLS+ +LLCFGFV FGKMTKSI  ++VS+ILYCVGG LGVTA FIA
Sbjct: 63  VSVQIEKKLPRVFNFLSLTLLLCFGFVAFGKMTKSI-LKRVSRILYCVGGVLGVTALFIA 122

Query: 124 TAIPYSPYFQFIIFLLYLIFCFVSMLITTTHNPSSS 152
           +AIPY+ YFQ IIFL+YLIF  + ML+   H  SSS
Sbjct: 123 SAIPYASYFQIIIFLIYLIFWLMFMLV--AHKSSSS 153

[Close]

BLAST of CcUC01G015690 vs. NCBI nr
Match: KAE8652531.1 (hypothetical protein Csa_013077, partial [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-23
Identity = 65/98 (66.33%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 23  GGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFV 82
           G  R  E AAEMVEEWK+MI+  CVSSAIGIATVSV I+T+LPN+FQ LS+ VLLCF  V
Sbjct: 4   GVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSV 63

Query: 83  GFGKMTKSINFQKVSKILYCVGGFLGVTAFFIATAIPY 121
            F +M  SI F+ +SKILYCVGG L  ++ FIATAIPY
Sbjct: 64  VFARMINSI-FETLSKILYCVGGLLYASSCFIATAIPY 100

[Close]

BLAST of CcUC01G015690 vs. NCBI nr
Match: KAG6584385.1 (hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-17
Identity = 60/123 (48.78%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 21  EEGGGRKLE----AAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVL 80
           EE G  + +    +A EM+ +W+ M+V  C+ +AI IATVSVQI+TKL   FQFLS  ++
Sbjct: 41  EEAGAAEYQWRPVSAVEMLMQWENMMVTFCMGTAIAIATVSVQIQTKLSPMFQFLSGALM 100

Query: 81  LCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVTAFFIATAIPYSPYFQFIIFLLYLIFC 140
            CF F    K+   I  Q+VS ILY +GGF  VTAFFIA AIPY+ +FQ +   LYL+F 
Sbjct: 101 GCFCFTTSAKL---IKHQRVSLILYFLGGFCFVTAFFIAIAIPYAFHFQILTLALYLVFL 160

[Close]

BLAST of CcUC01G015690 vs. NCBI nr
Match: KGN60003.2 (hypothetical protein Csa_000735, partial [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 5.6e-16
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 14  SLWESLKEEGGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSV 73
           ++W      G  R LE  AEMVEE KEMI+  C+SSAIGIATVSVQ +TKLPN+FQFLS+
Sbjct: 10  AVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSI 69

Query: 74  VVLLCFGFVGFGKMTKSINFQKVSKIL 101
            VL+CF  VGF +M  SI F+ +SKIL
Sbjct: 70  AVLICFLSVGFARMISSI-FKTLSKIL 95

[Close]

BLAST of CcUC01G015690 vs. NCBI nr
Match: KAE8652532.1 (hypothetical protein Csa_023780, partial [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-08
Identity = 41/54 (75.93%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 15 LWESLKEE--------GGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQI 61
          LWESLK E         GGRKL  AAEMVEEWKEMIVALCVSSA+GIATVSVQI
Sbjct: 1  LWESLKGEEESGDGSGRGGRKLTMAAEMVEEWKEMIVALCVSSAMGIATVSVQI 54

[Close]

BLAST of CcUC01G015690 vs. ExPASy TrEMBL
Match: A0A0A0LQB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.0e-55
Identity = 124/161 (77.02%), Postives = 133/161 (82.61%), Query Frame = 0


Query: 2   RCWVGNWIRKACSLWESLKEE--------GGGRKLEAAAEMVEEWKEMIVALCVSSAIGI 61
           RCWVG+ IRKAC LWESLK E         GGRKL   AEMVEEWKEMIVALCVSSAIGI
Sbjct: 3   RCWVGSCIRKACRLWESLKGEEESGDSGGHGGRKLTMVAEMVEEWKEMIVALCVSSAIGI 62

Query: 62  ATVSVQIET--KLPNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVTA 121
           ATVSVQIET  +LP TFQFLS+VVLLCFGFVGF KMTK I F+ VSKILYCVGGFLGVTA
Sbjct: 63  ATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKMTKPI-FKTVSKILYCVGGFLGVTA 122

Query: 122 FFIATAIPYSPYFQFIIFLLYLIFCFVSMLITTTHNPSSSS 153
           FFIATAIP++PYFQ IIF+LYL+FCF+ MLITT HN   SS
Sbjct: 123 FFIATAIPFAPYFQIIIFILYLLFCFIFMLITTIHNQQPSS 162

[Close]

BLAST of CcUC01G015690 vs. ExPASy TrEMBL
Match: A0A0A0LCY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 7.0e-33
Identity = 86/142 (60.56%), Postives = 103/142 (72.54%), Query Frame = 0


Query: 14  SLWESLKEEGGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSV 73
           ++W      G  R LE  AEMVEE KEMI+  C+SSAIGIATVSVQ +TKLPN+FQFLS+
Sbjct: 10  AVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSI 69

Query: 74  VVLLCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVTAFFIATAIPYSPYFQFIIFLLYL 133
            VL+CF  VGF +M  SI F+ +SKILYC GGFL  T  FIATAIPY  +F  I+ +LY 
Sbjct: 70  AVLICFLSVGFARMISSI-FKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYS 129

Query: 134 IFCFV-SMLITTTHNPSSSSTS 155
           IFC +  MLI+ THNPSS S+S
Sbjct: 130 IFCIIFVMLISITHNPSSPSSS 150

[Close]

BLAST of CcUC01G015690 vs. ExPASy TrEMBL
Match: A0A0A0LQP5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.1e-24
Identity = 80/156 (51.28%), Postives = 101/156 (64.74%), Query Frame = 0


Query: 5   VGNWIRKACSLWESLKEEGGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKL 64
           VG W R+           G  R LE  AE VEE KE I+ LCVSSAIGI T SVQI+TKL
Sbjct: 11  VGAWFRQPYC--------GARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKL 70

Query: 65  PNTFQFLSVVVLLCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVTAFFIATAIPY-SPY 124
           PN+FQ LS+ +LLCF  V F +M +S+ F+ +S+ILYCVG F+  T  FIATAI Y   +
Sbjct: 71  PNSFQCLSMPILLCFVSVVFARMIESV-FRTLSEILYCVGDFMCATTCFIATAISYDDAH 130

Query: 125 FQFIIFLLYLIFCFVSML----ITTTHN-PSSSSTS 155
           F  I+ +LY IFC + ++    I+ THN PSS S+S
Sbjct: 131 FHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSS 157

[Close]

BLAST of CcUC01G015690 vs. ExPASy TrEMBL
Match: A0A0A0LSX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.1e-24
Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = 0


Query: 14  SLWESLKEEGGGRKLEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSV 73
           ++W      G  R  E AAEMVEEWK+MI+  CVSSAIGIATVSV I+T+LPN+FQ LS+
Sbjct: 9   AVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSI 68

Query: 74  VVLLCFGFVGFGKMTKSINFQKVSKILYCVGGFLGVTAFFIATAIPYSPYF 125
            VLLCF  V F +M  SI F+ +SKILYCVGG L  ++ FIATAIPY+  F
Sbjct: 69  AVLLCFVSVVFARMINSI-FETLSKILYCVGGLLYASSCFIATAIPYASSF 118

[Close]

BLAST of CcUC01G015690 vs. ExPASy TrEMBL
Match: A0A0A0LEV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.9e-10
Identity = 47/128 (36.72%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 28  LEAAAEMVEEWKEMIVALCVSSAIGIATVSVQIETKLPNTFQFLSVVVLLCFGFVGFGKM 87
           +E  A+MVEE K  I+    +    IA +SVQ + KLP++F+F+S+  LLC        M
Sbjct: 10  VEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCL-LCFVSAM 69

Query: 88  TKSINFQKVSKILYCVGGFLGVTAFFIATAIPYSPYFQFIIFLLYLIFCF-VSMLITTTH 147
               +F+  +K+LY +G F  +T++ IA AIP   YF  ++ LL+LI C  + +L++ T 
Sbjct: 70  IIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITLVILMSNTC 129

Query: 148 NPSSSSTS 155
           +P +S+T+
Sbjct: 130 SPPNSTTN 136

The following BLAST results are available for this feature:

BLAST of CcUC01G015690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572911.1	9.7e-37	65.38	hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652531.1	1.6e-23	66.33	hypothetical protein Csa_013077, partial [Cucumis sativus]	[more]
KAG6584385.1	2.9e-17	48.78	hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN60003.2	5.6e-16	60.92	hypothetical protein Csa_000735, partial [Cucumis sativus]	[more]
KAE8652532.1	1.5e-08	75.93	hypothetical protein Csa_023780, partial [Cucumis sativus]	[more]

BLAST of CcUC01G015690 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC01G015690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQB6	1.0e-55	77.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1	[more]
A0A0A0LCY2	7.0e-33	60.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1	[more]
A0A0A0LQP5	2.1e-24	51.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1	[more]
A0A0A0LSX4	2.1e-24	60.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1	[more]
A0A0A0LEV1	2.9e-10	36.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1	[more]

BLAST of CcUC01G015690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34741	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 20..146
None	No IPR available	PANTHER	PTHR34741:SF2	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 20..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC01G015690.1	CcUC01G015690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding