CcUC01G015520 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC01G015520
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	ATP-dependent Clp protease adapter protein ClpS
Location	CicolChr01: 28310252 .. 28314864 (-)
RNA-Seq Expression	CcUC01G015520
Synteny	CcUC01G015520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTGAGCCACTGAAGCTGCTGCACCAAATCACTCACTCTTCATCCTTCTACACTTCTTTCAAGCAGGCCGAGCGAGGGCGAGAGAGGCCATGGAAGCTGCAATTTGCGGTCGACTACCTCTTTCTCCCAACCATTTCTTCAACCCAACCAAGCCAGGTATTCAGACTTCTATTAATTTGCTCCCCTTATTTTCTTTCCTAATCAATTCGTCTGTACTTAATCCAAATTTAGAGGAAGGATTTTGAGAAATTTCGATTTCGTTATTGAATATTTGCATATTCCTGGCTTTGTTTTGGCTCCTTAGAATGAGTAGAATAAAATTTATTAACCAGGGAAATCTGCGGACCATCTGCTTGTAGAATGATTATTTTCCTGTTTGTATGAATTTTATTTTTTCTCTAAGAGTGAAACAAAGTGTTGCATTATGAGGGGGAAAAACTGCAAATTGAACCAAATTGATGTTAGAGGAAGATCTGAAGCTTTTTGTTTGTATGTGTCTGTTTATTTCTGGTGCAGTAGTTTAATGCATTCGTGATTGTTTGGTGAAATCTTGTTTGTTTGTGTGGGTGGAAGTATTTATATAATTAACTTTATTGTAATCTGAACATGTACGAGAGCAGGTGAGTTGGAGGTTGTATTCTCAAATCATGTAATTCATTTTTATTAGATAACATGAAGTTCCATCTCAAAAACAATTGGCTATAGAAGTAATAGCTTATCTATCTTATTAAGATTGCGATGCCCTTTTGATTGTTCTAGTGTAGGATCCTTAACGTGCCCTCTGAAGATAGTGCTTCTTTTGGGTTCACCATTCTTGAATCGGATATTTTTTTTTTCCTTCTAATTAAACCAAATATTTGTTTGAGCTTTATGGACTCTATTACCATATTAGATAATATAGAATTCCATCTCAAAACTAATTCGCACCGAGAGGAGTAGTTCATCTATCTTGTTAAGATTGTGAGAGTGTCTTTTAGCCAATTGATCTTCCAATATGCTAGTTGCAATATGTGAGGTTGCTTGATTTTTCCAATATGGGACCTGAGCAATTTTATCCCCAATCAATATTGCATTTTGAGAGATAAAACACTAAAAGGTGAATTACAATGAAGCCTTTTCTTTTCAGGTGGAACTTAGAGTATAAAGACTATAGTCTTTAAAAACTGTATACTATTTTCACCAATATAAGCATGACACAAAATTAATTATAAAAAGTTATCAACATTTGAGGAAGGGTCCTCAAAAATTCTCCCATTTCGTACACACCAGAGGATCCAAAAATCTGCCCTGTTGATAGCTAGCTATAATGATTTCTTCACACCATGGAAAGGATGACCCACGACAGTGGAAGCAAGAATACCATAGATGTTGTCATTGACTAACTAGGCATCCAGCGTTAGTAACTATTGAAAAAGAAGGGAAGAAAAAGAACACGAAGTTTACGTGGAAAACACTAGTATAGGGAGAAAAAACCACGATAGAAATTTTCTCTTTTTATTAATTTGATACCTTCAATGTACAAGAGGAGGAAAAATAAATAGAGACCCCAAATCTACAAAAAAGAAAAAATATTAGGGAATATAAAAAGAAAATACGAACTACAATATCCCCAAGTATCCTCTTTTATTTTCAATAGTAACCAATATTGAAAGGCAAGAGCAATGGGAAAAAAGATGGCATGGATGTTAAGCAAACACATCACATACCATAGATGTTGCTAAACATAATCATTGACTCACCAAAGGCATCCAGCGTTAGTAACTATTGAAAAAGAAGGGAAGAAAAAGAACACGAGGTTTACTTGGAAAACTCTAGTACAAGGAGAAAAAACCATGATAGAAATTTTCTCTTTTTATTAATTTGATACCTACAATGTACAAGAGGAGGAAAAATAAATAGATACCCCAAATCTACAAAAGGAAAAAATATTAGGGAATATAAAAAGAAAATACAAAATCTACAATATCCCCAAAAATCCTCTTTTATTTTCAACAGTAACCAAAATTGAAAGGCAAAAGAGCAATGGGCAAAAAGATGGCATGGGTGTTAAGCAAACACATCACATACCATAGATGTTGCTAAACATAATCATTGACTAACCAAAGGCATCCAGCGTTAGTAACTATTGAAAAAGAAGGGAAGAAAAAGAACATGAGGTTTATAGGGAGAAAAAACCATGATAGAAATTTTCTCTTTTTATTAATTTGATACCTACAATGTACAAGAGGAGGAAAAATAAAGAGACCCCAAATCTACAAAAGGAAAAAATATTAGGGAATATAAAAAGAAAATACAAAATCTACAATATCCCCAAAAATCCTCTTTTATTTTCAACAGTAACCAAAATTGAAAGGCAAAAGAGCAATGGGCAAAAAGATGACATGGGTGTTAAGCAAACACATCACATACCATAGATGTTGCTAAACATAATCATTGACTAACCAAAGGCATCCAGCGTTAGTAACTATTGAAAAAGAAGGGAAGAAAAAGAACATGAGGTTTATAGGGAGAAAAAACCATGATAGAAATTTTCTCTTTTTATTAATTTGATACCTACAATGTACAAGAGGAGGAAAAATAAAGAGACCCCAAATCTACAAAAGGAAAAAATATTAGGGAATATAAAAAGAAAATACAAAATCTACAATATCCCCAAAAATCCTCTTTTATTTTCAACAGTAACCAAAATTGAAAGGCAAAAGAGCAATGGGCAAAAAGATGACATGGATGTTAAGCAAACGCATCACACACCAAGGAGAGGGAAAAGTGGAGCATTCTTCTTTTAAGGCCGTCAGCAGTGTTGATACCCTATTACTTAGCCCCCACAAAAAGATTTAAATTTTCTTCAGATAAACTTCCTTCCAAATCACTGAATAAAAGTTGTGTTAGGTACTTAAGCAACTTGAAGAACCACACCCCAACAACCAGCTATTAAGATGAGAGAGTCAAGCTGGTGCTTAAGTACCTAACAATGGTATCAGAGTCAGTTTTCAACGTCTGGAGAGGAGCATTGACAGAGGATTCTGACCCAGTGTTTCCAAGTGAAGTACTGTTGATCTAGCCGTCGGGATGTCGGCTTTCCGGGGATGAGGTATTGTTAGGAACCAAGGTAGTATGGGCTACCTTTGTCCCACATTTATTATAATGGGATGACCAATGCGATACTTAAGTGGCTTGGCTCTCCCACCTCAATAGGTGGTTTTTGGAGTGTGGTTCTCCAAGGTGTTAAATACCTAACAGGTTGTTCGGAGATGAGACCTTACTCCTTAGCATGTACAAAATCCTTCATTAATAAAAGTGCCATGAAAGCTTTAGAGGTTCTACTTCAAGTCTGCAGGCCAAAGATTTAATAACATAGAATCTAATACTAACGCAACCCACATTGCATCAAAGACTTAGAAAAATATGATGCATTAATGCTTGTGTAAGATTCAACTGGTTAAAGCATATACTCTTGATTTATAGGTCAAAAGTTCAAATCCTCGACCCCATTTATTGTTGACTAGTTTGTGAATCATGCATATGGACAACCATAACAGAGGTTCATTGTAAGAACTAAATTTGCAAGGATCTTAGGTCCTATTTATATACTCTTCAAGACTCTTTAAATTTCTAGTTCGAGATAAATGTTAATGGCCCATTCTAAACGTTAATATTCTTGGATAATCTTGGACGACGAACTGGCACTGATTGTTGAATTTTACATGGTCCATAATCGACCAGATCCTGGGTTGCATTTAATTAAGAGCTTCTTGCATTTAACACGTGACCAAACAGTGAACACTTAGGAATATATATATTAATAAATGAGCTCAGGATCAGAATCAGCTTTGGATTACAATATTCATAATCACGGTACACTTTTTTTACCTACAAAAGTGTGGAGGCTGTTCATTTTATTATTCGTTGGAACTTGCATGACATCTTCATACAATATTACCCATTTATCATTGCTACTTGTGTCATAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAATGATGTTATCAGCTGCTGAGCTGGGAAGAGGTGGGGGGTTGTTGGAAAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCTGAGTTTGATGTTAGGTATAAAACAGTTTTCCTTTGAATTTATGTCACGTATAAGCAACTAAAGATCTGTATGCACTAGAAACGGTTCAACCTCCAAAATAATTTTGATGTTCAGGAAATCAAGGAAAACTGCTCCGCCTTATCGAGTGTTGCTACATAACGACAATTACAACAAGCGCGAGTACGTTGTGCAAGTTCTGATGAAGGTTATCCCTGGAATGACCCTTGACAATGCAGTCAACATAATGCAGGAGGCACATTACAATGGGATGGCAGTGGTAATTATCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCTTCTAAGTTCAATCGAGCCTGCAAGTGATGGTTGTTGAATAGGAAACATAAATTATGTAATGTACTCTTTTGCCCCCCCTTAGTTATCAGCCATATTAAAATTGCTTGTCCTCAACTGCTACAGTATTGCAAGCTGCACCTATGTACATAAATAGAGATACTTCATAAACA

mRNA sequence

TCTCTGAGCCACTGAAGCTGCTGCACCAAATCACTCACTCTTCATCCTTCTACACTTCTTTCAAGCAGGCCGAGCGAGGGCGAGAGAGGCCATGGAAGCTGCAATTTGCGGTCGACTACCTCTTTCTCCCAACCATTTCTTCAACCCAACCAAGCCAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAATGATGTTATCAGCTGCTGAGCTGGGAAGAGGTGGGGGGTTGTTGGAAAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAGGAAAACTGCTCCGCCTTATCGAGTGTTGCTACATAACGACAATTACAACAAGCGCGAGTACGTTGTGCAAGTTCTGATGAAGGTTATCCCTGGAATGACCCTTGACAATGCAGTCAACATAATGCAGGAGGCACATTACAATGGGATGGCAGTGGTAATTATCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCTTCTAAGTTCAATCGAGCCTGCAAGTGATGGTTGTTGAATAGGAAACATAAATTATGTAATGTACTCTTTTGCCCCCCCTTAGTTATCAGCCATATTAAAATTGCTTGTCCTCAACTGCTACAGTATTGCAAGCTGCACCTATGTACATAAATAGAGATACTTCATAAACA

Coding sequence (CDS)

ATGGAAGCTGCAATTTGCGGTCGACTACCTCTTTCTCCCAACCATTTCTTCAACCCAACCAAGCCAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGCATCTTAATGATGTTATCAGCTGCTGAGCTGGGAAGAGGTGGGGGGTTGTTGGAAAAGCCAACAATAGAGAAGACAACACCTGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAGGAAAACTGCTCCGCCTTATCGAGTGTTGCTACATAACGACAATTACAACAAGCGCGAGTACGTTGTGCAAGTTCTGATGAAGGTTATCCCTGGAATGACCCTTGACAATGCAGTCAACATAATGCAGGAGGCACATTACAATGGGATGGCAGTGGTAATTATCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTGAGAGGCAATGGTCTTCTAAGTTCAATCGAGCCTGCAAGTGATGGTTGTTGA

Protein sequence

MEAAICGRLPLSPNHFFNPTKPGDKYYFHKQCRNRSILMMLSAAELGRGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

Homology

[Close]

BLAST of CcUC01G015520 vs. NCBI nr
Match: XP_022136971.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 318.2 bits (814), Expect = 4.1e-83
Identity = 151/158 (95.57%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 1   MEAAICGRLPLSPNHFFNPTKPGDKYYFHKQCRNRSILMMLSAAELGRGGGLLEKPTIEK 60
           MEAAICGR+PLSPNHFFN T+PGDKYYFHKQCRNRS LMMLS AELG+GGGLLEKPTIEK
Sbjct: 1   MEAAICGRVPLSPNHFFNQTRPGDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of CcUC01G015520 vs. NCBI nr
Match: XP_038894047.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida] >XP_038894048.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 313.5 bits (802), Expect = 1.0e-81
Identity = 149/158 (94.30%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 1   MEAAICGRLPLSPNHFFNPTKPGDKYYFHKQCRNRSILMMLSAAELGRGGGLLEKPTIEK 60
           MEAAICGR+ LSPNHFF+ TKPGDKYYFHKQCRNRS+LMMLS AELG+GGGLLEKPTIEK
Sbjct: 1   MEAAICGRVSLSPNHFFSSTKPGDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRK RKT+PPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKLRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of CcUC01G015520 vs. NCBI nr
Match: XP_008456997.1 (PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 311.6 bits (797), Expect = 3.9e-81
Identity = 148/158 (93.67%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MEAAICGRLPLSPNHFFNPTKPGDKYYFHKQCRNRSILMMLSAAELGRGGGLLEKPTIEK 60
           MEAAICGR+PLSPN FF  TKPGDKYYFHKQCRNRS LMM+S AELG+GGGLLEKPTIEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of CcUC01G015520 vs. NCBI nr
Match: XP_004137466.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus] >KGN64109.1 hypothetical protein Csa_014084 [Cucumis sativus])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 147/158 (93.04%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MEAAICGRLPLSPNHFFNPTKPGDKYYFHKQCRNRSILMMLSAAELGRGGGLLEKPTIEK 60
           MEAAICGR+PLSPN FF  TKPGDKYYFHKQCRNRS LMM+S AELG+GGGLLEKP IEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of CcUC01G015520 vs. NCBI nr
Match: XP_022994956.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 307.8 bits (787), Expect = 5.6e-80
Identity = 147/158 (93.04%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MEAAICGRLPLSPNHFFNPTKPGDKYYFHKQCRNRSILMMLSAAELGRGGGLLEKPTIEK 60
           MEAAICGRLPLSP HFFN T+PGDKYYFHKQCRNRSIL MLS AELG+GGGLLEKPT EK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK APPYRVLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of CcUC01G015520 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.2e-63
Identity = 121/160 (75.62%), Postives = 137/160 (85.62%), Query Frame = 0


Query: 1   MEAAICGRLPLSPNHFFNPTKPGDKYYFHK-QCRNRSILMMLS-AAELGRGGGLLEKPTI 60
           ME AICGRL L+P+  FN +K GDK+   K  C NRSILM LS +A LG+GGG+L+KP I
Sbjct: 1   METAICGRLALAPSSLFN-SKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 61  EKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQE 120
           EKTTPGRESEFD+RKS+K APPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQE
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQE 120

Query: 121 AHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           AH NG+AVVI+CAQ DAE HCMQLRGNGLLSS+EP   GC
Sbjct: 121 AHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of CcUC01G015520 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-22
Identity = 58/109 (53.21%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 50  GGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTL 109
           GG+++ PT   TT  ++    V +S+K  P Y+VLLHNDNYNKREYVV+VL+KV+  +T+
Sbjct: 61  GGVMDAPT---TT--QQPASGVERSQKRPPIYKVLLHNDNYNKREYVVKVLLKVVEQITV 120

Query: 110 DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           D+AV  MQEAH  G+A+V+ C Q +AE +C  LR NGL S+IEP   GC
Sbjct: 121 DDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLNGLTSTIEPG--GC 162

[Close]

BLAST of CcUC01G015520 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 75  RKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVD 134
           RK AP YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEDHCMQLRGNGLLSSIEP 154
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

[Close]

BLAST of CcUC01G015520 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-15
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 75  RKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVD 134
           RK AP YRVLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEDHCMQLRGNGL 148
           AE +C QL+ +GL
Sbjct: 75  AEFYCEQLKSHGL 87

[Close]

BLAST of CcUC01G015520 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-13
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 54  EKPTIEKTTPGRESEFD--VRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDN 113
           E PT    +PG  +  D    + RK +P Y+VLLHND  N  EYV+  L +V+P ++  +
Sbjct: 4   ETPT---RSPGGAAVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQD 63

Query: 114 AVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEP 154
           A+ +M EAH  G+ +VI+C    AE +C  L+  GL SSIEP
Sbjct: 64  AMAVMLEAHNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

[Close]

BLAST of CcUC01G015520 vs. ExPASy TrEMBL
Match: A0A6J1C511 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008549 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.0e-83
Identity = 151/158 (95.57%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 1   MEAAICGRLPLSPNHFFNPTKPGDKYYFHKQCRNRSILMMLSAAELGRGGGLLEKPTIEK 60
           MEAAICGR+PLSPNHFFN T+PGDKYYFHKQCRNRS LMMLS AELG+GGGLLEKPTIEK
Sbjct: 1   MEAAICGRVPLSPNHFFNQTRPGDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of CcUC01G015520 vs. ExPASy TrEMBL
Match: A0A1S3C561 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103496767 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 1.9e-81
Identity = 148/158 (93.67%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MEAAICGRLPLSPNHFFNPTKPGDKYYFHKQCRNRSILMMLSAAELGRGGGLLEKPTIEK 60
           MEAAICGR+PLSPN FF  TKPGDKYYFHKQCRNRS LMM+S AELG+GGGLLEKPTIEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of CcUC01G015520 vs. ExPASy TrEMBL
Match: A0A0A0LSY6 (ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.1e-81
Identity = 147/158 (93.04%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MEAAICGRLPLSPNHFFNPTKPGDKYYFHKQCRNRSILMMLSAAELGRGGGLLEKPTIEK 60
           MEAAICGR+PLSPN FF  TKPGDKYYFHKQCRNRS LMM+S AELG+GGGLLEKP IEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of CcUC01G015520 vs. ExPASy TrEMBL
Match: A0A6J1K0P0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111490541 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.7e-80
Identity = 147/158 (93.04%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MEAAICGRLPLSPNHFFNPTKPGDKYYFHKQCRNRSILMMLSAAELGRGGGLLEKPTIEK 60
           MEAAICGRLPLSP HFFN T+PGDKYYFHKQCRNRSIL MLS AELG+GGGLLEKPT EK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK APPYRVLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of CcUC01G015520 vs. ExPASy TrEMBL
Match: A0A6J1GS56 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457001 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.0e-79
Identity = 146/158 (92.41%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 1   MEAAICGRLPLSPNHFFNPTKPGDKYYFHKQCRNRSILMMLSAAELGRGGGLLEKPTIEK 60
           MEAAICGRLPLSP HFFN T+PGDKYYFHKQCRNRSIL MLS AELG+GGGLLEKP  EK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60

Query: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK APPYRVLLHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of CcUC01G015520 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 243.0 bits (619), Expect = 1.6e-64
Identity = 121/160 (75.62%), Postives = 137/160 (85.62%), Query Frame = 0


Query: 1   MEAAICGRLPLSPNHFFNPTKPGDKYYFHK-QCRNRSILMMLS-AAELGRGGGLLEKPTI 60
           ME AICGRL L+P+  FN +K GDK+   K  C NRSILM LS +A LG+GGG+L+KP I
Sbjct: 1   METAICGRLALAPSSLFN-SKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 61  EKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQE 120
           EKTTPGRESEFD+RKS+K APPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQE
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQE 120

Query: 121 AHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           AH NG+AVVI+CAQ DAE HCMQLRGNGLLSS+EP   GC
Sbjct: 121 AHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of CcUC01G015520 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 174.1 bits (440), Expect = 8.9e-44
Identity = 95/160 (59.38%), Postives = 108/160 (67.50%), Query Frame = 0


Query: 1   MEAAICGRLPLSPNHFFNPTKPGDKYYFHK-QCRNRSILMMLS-AAELGRGGGLLEKPTI 60
           ME AICGRL L+P+  FN +K GDK+   K  C NRSILM LS +A LG+GGG+L+KP I
Sbjct: 1   METAICGRLALAPSSLFN-SKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 61  EKTTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQE 120
           EKTTPGRESEFD+RKS+K APPYRV+LHNDN+NKREYVVQVLMK                
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMK---------------- 120

Query: 121 AHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
                          DAE HCMQLRGNGLLSS+EP   GC
Sbjct: 121 --------------ADAEQHCMQLRGNGLLSSVEPDGGGC 129

The following BLAST results are available for this feature:

BLAST of CcUC01G015520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136971.1	4.1e-83	95.57	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
XP_038894047.1	1.0e-81	94.30	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa ...	[more]
XP_008456997.1	3.9e-81	93.67	PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like ...	[more]
XP_004137466.1	1.5e-80	93.04	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus...	[more]
XP_022994956.1	5.6e-80	93.04	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]

BLAST of CcUC01G015520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	2.2e-63	75.63	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	1.4e-22	53.21	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	2.8e-18	58.23	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	1.3e-15	56.16	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	2.1e-13	42.16	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of CcUC01G015520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C511	2.0e-83	95.57	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
A0A1S3C561	1.9e-81	93.67	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis ...	[more]
A0A0A0LSY6	7.1e-81	93.04	ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 S...	[more]
A0A6J1K0P0	2.7e-80	93.04	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1GS56	1.0e-79	92.41	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita mos...	[more]

BLAST of CcUC01G015520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	1.6e-64	75.63	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	8.9e-44	59.38	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 75..153 e-value: 2.2E-21 score: 77.5
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 75..152
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 77..144 e-value: 1.2E-18 score: 66.7
None	No IPR available	PANTHER	PTHR33473:SF14	ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS	coord: 1..158
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 1..158
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	HAMAP	MF_00302	ClpS	coord: 61..155 score: 15.126878

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC01G015520.1	CcUC01G015520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity