CcUC01G015420 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC01G015420
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionvacuolar protein sorting-associated protein 13-like protein
LocationCicolChr01: 28214278 .. 28214577 (+)
RNA-Seq ExpressionCcUC01G015420
SyntenyCcUC01G015420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGGGAAAAAAGGAAGGCAATGTCGCCGGAGGAGAACGGCGGAGTGGTTGAAGAGACGAAGAAGAAGAAGAAGAAGAAGAAAGTGAGGAAGGAGGAGAAAGAGGCGGCGGAGGTGGAGGAGCCAACAACGGAGGAGGTGGAGGAGTTTTATGCCATTTTGAGGAGGATGGATGTGGCTTTGCGGTACTTGAAAGGGAGGAGGCTGCCGGAGAGAAAAACAACGGCGGAGACGGCGGCGATTGAGGAACATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTTCTAATTAA

mRNA sequence

ATGGAGAGGGAAAAAAGGAAGGCAATGTCGCCGGAGGAGAACGGCGGAGTGGTTGAAGAGACGAAGAAGAAGAAGAAGAAGAAGAAAGTGAGGAAGGAGGAGAAAGAGGCGGCGGAGGTGGAGGAGCCAACAACGGAGGAGGTGGAGGAGTTTTATGCCATTTTGAGGAGGATGGATGTGGCTTTGCGGTACTTGAAAGGGAGGAGGCTGCCGGAGAGAAAAACAACGGCGGAGACGGCGGCGATTGAGGAACATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTTCTAATTAA

Coding sequence (CDS)

ATGGAGAGGGAAAAAAGGAAGGCAATGTCGCCGGAGGAGAACGGCGGAGTGGTTGAAGAGACGAAGAAGAAGAAGAAGAAGAAGAAAGTGAGGAAGGAGGAGAAAGAGGCGGCGGAGGTGGAGGAGCCAACAACGGAGGAGGTGGAGGAGTTTTATGCCATTTTGAGGAGGATGGATGTGGCTTTGCGGTACTTGAAAGGGAGGAGGCTGCCGGAGAGAAAAACAACGGCGGAGACGGCGGCGATTGAGGAACATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTTCTAATTAA

Protein sequence

MEREKRKAMSPEENGGVVEETKKKKKKKKVRKEEKEAAEVEEPTTEEVEEFYAILRRMDVALRYLKGRRLPERKTTAETAAIEEHKELNLNEVPSDSSN
Homology
BLAST of CcUC01G015420 vs. NCBI nr
Match: KGN64116.1 (hypothetical protein Csa_013670 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 77/104 (74.04%), Postives = 87/104 (83.65%), Query Frame = 0

Query: 1   MEREKRKAMSPEENGGVVEETKKKKKKKKVRKEEKE----AAEVEEPTTEEVEEFYAILR 60
           MEREKRK MS  E GGVVEE K++KKKK  ++EEK+    AAEVEEP+TEEVEEFYAILR
Sbjct: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR 60

Query: 61  RMDVALRYLKGRRLPERKTT-AETAAIEEHKELNLNEVPSDSSN 100
           RMD ALRYLKG+R+PER+TT  ETA   E+KELNLNEVPSDSSN
Sbjct: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

BLAST of CcUC01G015420 vs. NCBI nr
Match: KAG6584363.1 (hypothetical protein SDJN03_20295, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-19
Identity = 71/111 (63.96%), Postives = 83/111 (74.77%), Query Frame = 0

Query: 1   MEREKRKAMSPEENGGVVEETKKKKKKKKVRKEEKEAA-------EVEEPTTEEVEEFYA 60
           MEREKRK MSP E        K+ K+ KK RKEE+EAA       E+EEPTTEEVEEFYA
Sbjct: 1   MEREKRKKMSPGE--------KETKRSKKTRKEEREAAAAAGVETEMEEPTTEEVEEFYA 60

Query: 61  ILRRMDVALRYLKGRRLPERKTTAETAAI-----EEHKELNLNEVPSDSSN 100
           ILRRMDVALRYLKG+R+ ER+TTAETA +     +E +ELNLNEVP+DS+N
Sbjct: 61  ILRRMDVALRYLKGKRVVERRTTAETAVVGTGKGQEIQELNLNEVPADSTN 103

BLAST of CcUC01G015420 vs. NCBI nr
Match: XP_017636930.1 (PREDICTED: vacuolar protein sorting-associated protein 13-like protein [Gossypium arboreum])

HSP 1 Score: 54.3 bits (129), Expect = 6.9e-04
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 0

Query: 1  MEREKRKAMSPEENGGVVEETKKKKKKKKVRKEEKEAAEVEEPTTEEVEEFYAILRRMDV 60
          ME+EKRK    E  GGV  E+  KKKKKKV K E+E   V E   EEVEEF+AILRRM  
Sbjct: 1  MEKEKRKRSEKERKGGVTMESTNKKKKKKVTKVEEEEGGVGEEEEEEVEEFFAILRRMKA 60

Query: 61 ALRY 65
           ++Y
Sbjct: 61 VVKY 64

BLAST of CcUC01G015420 vs. ExPASy TrEMBL
Match: A0A0A0LVR0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.9e-25
Identity = 77/104 (74.04%), Postives = 87/104 (83.65%), Query Frame = 0

Query: 1   MEREKRKAMSPEENGGVVEETKKKKKKKKVRKEEKE----AAEVEEPTTEEVEEFYAILR 60
           MEREKRK MS  E GGVVEE K++KKKK  ++EEK+    AAEVEEP+TEEVEEFYAILR
Sbjct: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR 60

Query: 61  RMDVALRYLKGRRLPERKTT-AETAAIEEHKELNLNEVPSDSSN 100
           RMD ALRYLKG+R+PER+TT  ETA   E+KELNLNEVPSDSSN
Sbjct: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

BLAST of CcUC01G015420 vs. ExPASy TrEMBL
Match: A0A6P4Q1U1 (vacuolar protein sorting-associated protein 13-like protein OS=Gossypium arboreum OX=29729 GN=LOC108478995 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.4e-04
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 0

Query: 1  MEREKRKAMSPEENGGVVEETKKKKKKKKVRKEEKEAAEVEEPTTEEVEEFYAILRRMDV 60
          ME+EKRK    E  GGV  E+  KKKKKKV K E+E   V E   EEVEEF+AILRRM  
Sbjct: 1  MEKEKRKRSEKERKGGVTMESTNKKKKKKVTKVEEEEGGVGEEEEEEVEEFFAILRRMKA 60

Query: 61 ALRY 65
           ++Y
Sbjct: 61 VVKY 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN64116.11.2e-2474.04hypothetical protein Csa_013670 [Cucumis sativus][more]
KAG6584363.11.5e-1963.96hypothetical protein SDJN03_20295, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_017636930.16.9e-0456.25PREDICTED: vacuolar protein sorting-associated protein 13-like protein [Gossypiu... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LVR05.9e-2574.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1[more]
A0A6P4Q1U13.4e-0456.25vacuolar protein sorting-associated protein 13-like protein OS=Gossypium arboreu... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 18..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC01G015420.1CcUC01G015420.1mRNA