CcUC01G015140 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC01G015140
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Ribosomal protein S24/S35, mitochondrial
Location	CicolChr01: 27914460 .. 27916260 (+)
RNA-Seq Expression	CcUC01G015140
Synteny	CcUC01G015140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTGATTGGCACGATTATTTTGTTCGTCGTGTTTGCGTATCATCTCTCCGGTCATAAACCTGAGAAAATGGGGCTAAACCCTAGTACTGTAAAGAAACGCCATGAAACGAGCTATATGGGGAGCTGTCTTCAATGTTTGTTCTCGAACCCTTTTAGTCTCTCCTCCGCTACGAACCTTTCGCTCTGGTCCCTTACTGTCTCGATTTTCCGTTTTGACTTTGCGATGTTACTCATCCGGGAATGACAAGTACAATGGATTGAACTCAACCACGAATGAAAACAAGGATTCTCTCGTTGAAGATGATGTCAGTACCGAAGGTAAAATAATATTAATCTCGTTTCTCAATTTTCGATTGGACTTTTTGGAATTGTTTCGAGCAATCGTGGGTTGTTGGTGGGCATCATTTGAATAACAAAGTCTTGATTCCGACCCTTAGTCATAATCCTGCAAGGAAATATAGGCACTATGAATTATACTCTCGCTGATATTAAGATATATACTTTCTTCAGTTTAATTGTTTGAGTTCTTGAGTTGGTATTAGTTTTACACAATAGTTGACCATAAAATCTTGGATTACATCCTCTCCTCGTGTATAGGTTGTTTAATACCGGAAATTTTTAAAAAAGACGTCTTCAGAAGCGCTGTTAAAGAAAATACTTCTATCAAAAAACTTCTATTATAAGGAAATTTACAACAAGCGTAATGAAAGTTCATTTTTTGTTTGTTGGTTCTAGTATATTGAAAGTGCTTTTAATCAAATTAGATGTGAATAATAATTAAGATTACAAAGCAATTAAGTGAGAAAATTAGGGATCAGCAAGAAAAAGCAAAAGTGCTCAGAAAAATAGAGGGAAGTTTGGAGGATAAAGTGGGTAGAAAGATTTTAGTGTGTGATAAGAAGTCTGGGAGAGAGAGTTTGTGTACAGAGAAATTAAGAAAAAGGTGTTCATAGAGAAATGTTAGTAGAAGAAAGTTTGTATTTTCAGAAATTAAGGAGAATAAATTTTAGTGAAAGATACTTGATAGATCATCTACCATTCACTTGTTCGAAAAATACGTATCAGTGTTCTTAGTTTTATCGAAATTAACCATTTAAAAAGTACTTCTGTCATGTTTAGGGGCACCTCTATTTTTGATAGTACGATTAATTTTTATTTTTGAACGTGAAGAAAGCAACAAATGCTGTCAGCTTCTTCATTTGGTGTTCCTGGGTTTTTGGATTCATACACTTTCGATTTAGGAGCTGATACAGTTATTTTTTTGTGATTACAGAGCTGAAGAGTAAAATTAATAAATTTTATGAGGGTGATGTCGATTCATTACCAACAATTTTTGAAGCAATTTTGAAAAGGAAGCTATCGGGTAAACATGAAGATGATGATGATGAACTGATGAAAGAAATTCGAGAGCGAATGCCTGGACAAGTTGAAGATTTTAAAGATGAAGAATCTGGTTCAGATTTAAGTGAGTTGAATGAAACTGATGAAGAAACGGAGGATTCCAGTGATTATGAGGAAGAAGATAGAAGAATATAAGTTATGTTGACAACGTGAGTTCGATAGAGTCCATACTTGTTTGATGTTAGATCTTACATTTTTGGGGGAAAATTTTCAACTTTTAACATCTAATTTAGTTAATCTTTTGATTCATTTTAACTCAGAGGAACATATCAGATGATCATTGTTTGATCTATGGGCACTTGAACCCCAGATTGAGGAACTTTGTTGAATGGAAAATTGTATGCTATATGTCTTTTAAATGCTAATATTTGCATTTATAACATTAGCATGGCCAGAGCC

mRNA sequence

ACTTGATTGGCACGATTATTTTGTTCGTCGTGTTTGCGTATCATCTCTCCGGTCATAAACCTGAGAAAATGGGGCTAAACCCTAGTACTGTAAAGAAACGCCATGAAACGAGCTATATGGGGAGCTGTCTTCAATGTTTGTTCTCGAACCCTTTTAGTCTCTCCTCCGCTACGAACCTTTCGCTCTGGTCCCTTACTGTCTCGATTTTCCGTTTTGACTTTGCGATGTTACTCATCCGGGAATGACAAGTACAATGGATTGAACTCAACCACGAATGAAAACAAGGATTCTCTCGTTGAAGATGATGTCAGTACCGAAGAGCTGAAGAGTAAAATTAATAAATTTTATGAGGGTGATGTCGATTCATTACCAACAATTTTTGAAGCAATTTTGAAAAGGAAGCTATCGGGTAAACATGAAGATGATGATGATGAACTGATGAAAGAAATTCGAGAGCGAATGCCTGGACAAGTTGAAGATTTTAAAGATGAAGAATCTGGTTCAGATTTAAGTGAGTTGAATGAAACTGATGAAGAAACGGAGGATTCCAGTGATTATGAGGAAGAAGATAGAAGAATATAAGTTATGTTGACAACGTGAGTTCGATAGAGTCCATACTTGTTTGATGTTAGATCTTACATTTTTGGGGGAAAATTTTCAACTTTTAACATCTAATTTAGTTAATCTTTTGATTCATTTTAACTCAGAGGAACATATCAGATGATCATTGTTTGATCTATGGGCACTTGAACCCCAGATTGAGGAACTTTGTTGAATGGAAAATTGTATGCTATATGTCTTTTAAATGCTAATATTTGCATTTATAACATTAGCATGGCCAGAGCC

Coding sequence (CDS)

ATGAAACGAGCTATATGGGGAGCTGTCTTCAATGTTTGTTCTCGAACCCTTTTAGTCTCTCCTCCGCTACGAACCTTTCGCTCTGGTCCCTTACTGTCTCGATTTTCCGTTTTGACTTTGCGATGTTACTCATCCGGGAATGACAAGTACAATGGATTGAACTCAACCACGAATGAAAACAAGGATTCTCTCGTTGAAGATGATGTCAGTACCGAAGAGCTGAAGAGTAAAATTAATAAATTTTATGAGGGTGATGTCGATTCATTACCAACAATTTTTGAAGCAATTTTGAAAAGGAAGCTATCGGGTAAACATGAAGATGATGATGATGAACTGATGAAAGAAATTCGAGAGCGAATGCCTGGACAAGTTGAAGATTTTAAAGATGAAGAATCTGGTTCAGATTTAAGTGAGTTGAATGAAACTGATGAAGAAACGGAGGATTCCAGTGATTATGAGGAAGAAGATAGAAGAATATAA

Protein sequence

MKRAIWGAVFNVCSRTLLVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKHEDDDDELMKEIRERMPGQVEDFKDEESGSDLSELNETDEETEDSSDYEEEDRRI

Homology

[Close]

BLAST of CcUC01G015140 vs. NCBI nr
Match: XP_038894045.1 (uncharacterized protein LOC120082798 [Benincasa hispida])

HSP 1 Score: 224.9 bits (572), Expect = 4.8e-55
Identity = 129/162 (79.63%), Postives = 139/162 (85.80%), Query Frame = 0


Query: 1   MKRAIWGAVFNVCSRTLLVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNSTTNEN 60
           MKRA+ GAVFNV SRTL VSPPLRTFRSG LLS FS  +LR YSSGNDKYNGLNST  +N
Sbjct: 1   MKRALLGAVFNVYSRTLSVSPPLRTFRSGLLLSPFSFFSLRYYSSGNDKYNGLNST--KN 60

Query: 61  KDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKHEDDDDELMKEIRERM 120
           KDSL+EDDVSTEELK KI+KFYEGDV+SLPTIFEAILKRKLSGKHEDDD E+MKEIR+RM
Sbjct: 61  KDSLIEDDVSTEELKRKIDKFYEGDVESLPTIFEAILKRKLSGKHEDDDHEMMKEIRQRM 120

Query: 121 PGQVEDFKDEESGSDLSELNETDEETE---DSSDYEEEDRRI 160
           PGQVED   EE  SDLSELNET EE E   DSSD E+EDRR+
Sbjct: 121 PGQVEDSTGEEYDSDLSELNETAEEMEDFSDSSDSEDEDRRV 160

[Close]

BLAST of CcUC01G015140 vs. NCBI nr
Match: XP_023519890.1 (uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-53
Identity = 125/163 (76.69%), Postives = 137/163 (84.05%), Query Frame = 0


Query: 1   MKRAIWGAVFNVCSRTLLVSPPLRTFRSGPLLSRFSVLTL---RCYSSGNDKYNGLNSTT 60
           MKRAIWGAVF VCSR + +SP L+T RSGPLL  FSV      RCYS+GNDKYNGLNSTT
Sbjct: 1   MKRAIWGAVFTVCSRRVSISPLLQTLRSGPLLPPFSVSIASQSRCYSTGNDKYNGLNSTT 60

Query: 61  NENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKHEDDDDELMKEIR 120
            ENKDSLV+DDVS EELK KI++FYEGDV+SLPTIFEAILKRKLSGKH D DDELMKEIR
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 ERMPGQVEDFKDEESGSDLS-ELNETDEETEDSSDYEEEDRRI 160
           +RMPG+VEDFKDEE  SDLS ELNETDEE E+    EEEDRR+
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGELNETDEEMEEDPS-EEEDRRV 162

[Close]

BLAST of CcUC01G015140 vs. NCBI nr
Match: XP_022924024.1 (uncharacterized protein LOC111431572 [Cucurbita moschata])

HSP 1 Score: 217.2 bits (552), Expect = 9.9e-53
Identity = 123/163 (75.46%), Postives = 137/163 (84.05%), Query Frame = 0


Query: 1   MKRAIWGAVFNVCSRTLLVSPPLRTFRSGPLLSRFSV---LTLRCYSSGNDKYNGLNSTT 60
           MKRAIWGAVF  CSR + +SP L+T RSGPLL  FSV      RCYSSGNDKYNGLNSTT
Sbjct: 1   MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  NENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKHEDDDDELMKEIR 120
            ENKDSLV+DDVS EELK KI++FYEGDV+SLPTIFEAILKRKLSGKH D DDELMKEIR
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 ERMPGQVEDFKDEESGSDLS-ELNETDEETEDSSDYEEEDRRI 160
           +R+PG+VEDFKDEE  SDLS ELNE+DEE ++ S  EEEDRR+
Sbjct: 121 QRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSS-EEEDRRV 162

[Close]

BLAST of CcUC01G015140 vs. NCBI nr
Match: XP_008461340.1 (PREDICTED: uncharacterized protein LOC103499929 [Cucumis melo] >TYJ99013.1 uncharacterized protein E5676_scaffold248G002170 [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 9.9e-53
Identity = 122/160 (76.25%), Postives = 135/160 (84.38%), Query Frame = 0


Query: 1   MKRAIWGAVFNVCSRTLLVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNSTTNEN 60
           MKRA+WGAVFNVCSRTL VSPPLRTFRS PLLS FSV TLRCYSSGNDKYN LNST  +N
Sbjct: 1   MKRALWGAVFNVCSRTLSVSPPLRTFRSVPLLSPFSVFTLRCYSSGNDKYNELNST--KN 60

Query: 61  KDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKRKLSGKHEDDDDELMKEIRER 120
           KDSLV+DDVSTEELK KI+KFYE GD DSLP IFEAILKRKLSGKHED DDELMKEIR+R
Sbjct: 61  KDSLVDDDVSTEELKRKIDKFYEGGDADSLPEIFEAILKRKLSGKHEDADDELMKEIRQR 120

Query: 121 MPGQVEDFKDEESGSDLSELNETDEETEDSSDYEEEDRRI 160
           MPG++EDFK EE  S+L++        + +SD EEED+RI
Sbjct: 121 MPGEIEDFKGEEYDSELTD--------DAASDSEEEDKRI 150

[Close]

BLAST of CcUC01G015140 vs. NCBI nr
Match: KAG7019929.1 (hypothetical protein SDJN02_18896, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215.3 bits (547), Expect = 3.8e-52
Identity = 121/163 (74.23%), Postives = 136/163 (83.44%), Query Frame = 0


Query: 1   MKRAIWGAVFNVCSRTLLVSPPLRTFRSGPLLSRFSV---LTLRCYSSGNDKYNGLNSTT 60
           MKRAIWGAVF  CSR + +SP L+T RSGPLL  FSV      RCYSSGNDKYNGLNSTT
Sbjct: 1   MKRAIWGAVFAACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  NENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKHEDDDDELMKEIR 120
            ENKDSLV+DD+S EELK KI++FYEGD++SLP IFEAILKRKLSGKH D DDELMKEIR
Sbjct: 61  IENKDSLVDDDISNEELKRKIDRFYEGDIESLPAIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 ERMPGQVEDFKDEESGSDLS-ELNETDEETEDSSDYEEEDRRI 160
           +RMPG+VEDFKDEE  SDLS ELNE+DEE ++ S  EEEDRR+
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGELNESDEEMKEDSS-EEEDRRV 162

[Close]

BLAST of CcUC01G015140 vs. ExPASy TrEMBL
Match: A0A5D3BIA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002170 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.8e-53
Identity = 122/160 (76.25%), Postives = 135/160 (84.38%), Query Frame = 0


Query: 1   MKRAIWGAVFNVCSRTLLVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNSTTNEN 60
           MKRA+WGAVFNVCSRTL VSPPLRTFRS PLLS FSV TLRCYSSGNDKYN LNST  +N
Sbjct: 1   MKRALWGAVFNVCSRTLSVSPPLRTFRSVPLLSPFSVFTLRCYSSGNDKYNELNST--KN 60

Query: 61  KDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKRKLSGKHEDDDDELMKEIRER 120
           KDSLV+DDVSTEELK KI+KFYE GD DSLP IFEAILKRKLSGKHED DDELMKEIR+R
Sbjct: 61  KDSLVDDDVSTEELKRKIDKFYEGGDADSLPEIFEAILKRKLSGKHEDADDELMKEIRQR 120

Query: 121 MPGQVEDFKDEESGSDLSELNETDEETEDSSDYEEEDRRI 160
           MPG++EDFK EE  S+L++        + +SD EEED+RI
Sbjct: 121 MPGEIEDFKGEEYDSELTD--------DAASDSEEEDKRI 150

[Close]

BLAST of CcUC01G015140 vs. ExPASy TrEMBL
Match: A0A6J1E804 (uncharacterized protein LOC111431572 OS=Cucurbita moschata OX=3662 GN=LOC111431572 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.8e-53
Identity = 123/163 (75.46%), Postives = 137/163 (84.05%), Query Frame = 0


Query: 1   MKRAIWGAVFNVCSRTLLVSPPLRTFRSGPLLSRFSV---LTLRCYSSGNDKYNGLNSTT 60
           MKRAIWGAVF  CSR + +SP L+T RSGPLL  FSV      RCYSSGNDKYNGLNSTT
Sbjct: 1   MKRAIWGAVFTACSRRVSISPLLQTLRSGPLLPSFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  NENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKHEDDDDELMKEIR 120
            ENKDSLV+DDVS EELK KI++FYEGDV+SLPTIFEAILKRKLSGKH D DDELMKEIR
Sbjct: 61  IENKDSLVDDDVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIR 120

Query: 121 ERMPGQVEDFKDEESGSDLS-ELNETDEETEDSSDYEEEDRRI 160
           +R+PG+VEDFKDEE  SDLS ELNE+DEE ++ S  EEEDRR+
Sbjct: 121 QRVPGEVEDFKDEEYDSDLSGELNESDEEMKEDSS-EEEDRRV 162

[Close]

BLAST of CcUC01G015140 vs. ExPASy TrEMBL
Match: A0A1S3CEX3 (uncharacterized protein LOC103499929 OS=Cucumis melo OX=3656 GN=LOC103499929 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.8e-53
Identity = 122/160 (76.25%), Postives = 135/160 (84.38%), Query Frame = 0


Query: 1   MKRAIWGAVFNVCSRTLLVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNSTTNEN 60
           MKRA+WGAVFNVCSRTL VSPPLRTFRS PLLS FSV TLRCYSSGNDKYN LNST  +N
Sbjct: 1   MKRALWGAVFNVCSRTLSVSPPLRTFRSVPLLSPFSVFTLRCYSSGNDKYNELNST--KN 60

Query: 61  KDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKRKLSGKHEDDDDELMKEIRER 120
           KDSLV+DDVSTEELK KI+KFYE GD DSLP IFEAILKRKLSGKHED DDELMKEIR+R
Sbjct: 61  KDSLVDDDVSTEELKRKIDKFYEGGDADSLPEIFEAILKRKLSGKHEDADDELMKEIRQR 120

Query: 121 MPGQVEDFKDEESGSDLSELNETDEETEDSSDYEEEDRRI 160
           MPG++EDFK EE  S+L++        + +SD EEED+RI
Sbjct: 121 MPGEIEDFKGEEYDSELTD--------DAASDSEEEDKRI 150

[Close]

BLAST of CcUC01G015140 vs. ExPASy TrEMBL
Match: A0A6J1KP40 (uncharacterized protein LOC111495236 OS=Cucurbita maxima OX=3661 GN=LOC111495236 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.9e-50
Identity = 121/161 (75.16%), Postives = 132/161 (81.99%), Query Frame = 0


Query: 1   MKRAIWGAVFNVCSRTLLVSPPLRTFRSGPLLSRFSV---LTLRCYSSGNDKYNGLNSTT 60
           MKRAIWGAVF  CSR + + P L+T RSGPLL  FSV      RCYSSGNDKYNGLNSTT
Sbjct: 1   MKRAIWGAVFAACSRRVSIPPLLQTLRSGPLLPPFSVSISSQSRCYSSGNDKYNGLNSTT 60

Query: 61  NENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKHEDDDDELMKEIR 120
            ENKDSLV+D VS EELK KI++FYEGDV+SLPTIFEAILKRKLSGKH D DDELMKEI 
Sbjct: 61  IENKDSLVDDYVSNEELKRKIDRFYEGDVESLPTIFEAILKRKLSGKHGDADDELMKEIL 120

Query: 121 ERMPGQVEDFKDEESGSDLS-ELNETDEETEDSSDYEEEDR 158
           +RMPG+VEDFKDEE  SDLS +LNETDEE E+ S  EEEDR
Sbjct: 121 QRMPGEVEDFKDEEYDSDLSGDLNETDEEMEEDSS-EEEDR 160

[Close]

BLAST of CcUC01G015140 vs. ExPASy TrEMBL
Match: A0A0A0LT17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042590 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.6e-48
Identity = 120/161 (74.53%), Postives = 134/161 (83.23%), Query Frame = 0


Query: 1   MKRAIWGAVFNVCSRTLLVSPPLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNSTTNEN 60
           MKRA+WGAVF+V S TL VSPPLRTFRS PLLS FSV TLR YSSGNDKYN LNST  +N
Sbjct: 1   MKRALWGAVFHVYSGTLSVSPPLRTFRSRPLLSPFSVSTLRRYSSGNDKYNELNST--KN 60

Query: 61  KDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKRKLSGKHEDDDDELMKEIRER 120
           KDSLV+DDVSTEELK KI+KFYE GD DSLP IFEAILKRKLSGKHED DDELMKEIR++
Sbjct: 61  KDSLVDDDVSTEELKRKIDKFYEGGDADSLPAIFEAILKRKLSGKHEDADDELMKEIRQQ 120

Query: 121 MPGQVEDFK-DEESGSDLSELNETDEETEDSSDYEEEDRRI 160
           +PG+VEDFK +EE  SDL +    D+ ++ S D EEEDRRI
Sbjct: 121 LPGEVEDFKGEEEYDSDLMD----DDSSDASDDSEEEDRRI 155

[Close]

BLAST of CcUC01G015140 vs. TAIR 10
Match: AT4G21460.1 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-12
Identity = 64/167 (38.32%), Postives = 96/167 (57.49%), Query Frame = 0


Query: 7   GAVF---NVCSRTLLVSP------PLRTFRSGPLLSRFSVLTLRCYSSGNDKYNGLNS-- 66
           GA+F   ++C+R +++S       P  T  + P   +F   +     SG +      S  
Sbjct: 3   GALFRNASLCARRIILSSRISPNVPFLTPIAAPAPPKFRFFS---SESGENSTTATESSP 62

Query: 67  TTNENKDSLVEDDVSTEELKSKINK-FYEGDVDSLPTIFEAILKRKLSGKHEDDDDELMK 126
           T + +K  LV +DVS +ELKS+I+K F EG+ D+LP + EA+L+R+L  KH + DDELM+
Sbjct: 63  TDSSDKKDLVVEDVSNKELKSRIDKSFNEGNEDALPGVIEALLQRRLVDKHAETDDELME 122

Query: 127 EIRERMPGQVEDFKDEESGSDLSELNETDEETED---SSDYEEEDRR 159
           +I E +P + +D KDE+  SD  E + TDEE ED   S +Y  E  R
Sbjct: 123 KI-ESLPFK-DDVKDEDFESDFEEAHSTDEELEDLYNSPEYVAEKMR 164

[Close]

BLAST of CcUC01G015140 vs. TAIR 10
Match: AT3G18240.1 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 68.6 bits (166), Expect = 5.3e-12
Identity = 62/166 (37.35%), Postives = 97/166 (58.43%), Query Frame = 0


Query: 11  NVCSRTLLVSPPLRTFRSGPLLSRFSVLT------LRCYSSGNDKYNGLNSTT------- 70
           ++C+R +++SP + T +  P +   + +        R +SS     +G NSTT       
Sbjct: 10  SLCARRIILSPRI-THQISPNVPFLAPIAAPAAPKFRFFSS----ESGENSTTAPESSPT 69

Query: 71  -NENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEDDDDELMKE 130
            +  K  LV +DVS +ELKS+I K++ EG+ D+LP + EA+L+R+L  KH + DDEL+++
Sbjct: 70  DSPEKKDLVVEDVSNKELKSRIEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLEK 129

Query: 131 IRERMPGQVEDFKDEESGSDLSELNETDEETED---SSDYEEEDRR 159
           I E +P + +D KDE+  SD  E + TDEE ED   S +Y  E  R
Sbjct: 130 I-ESLPFK-DDVKDEDFESDFEEAHSTDEELEDLYNSPEYVAEKMR 168

[Close]

BLAST of CcUC01G015140 vs. TAIR 10
Match: AT3G18240.2 (Ribosomal protein S24/S35, mitochondrial )

HSP 1 Score: 68.6 bits (166), Expect = 5.3e-12
Identity = 62/166 (37.35%), Postives = 97/166 (58.43%), Query Frame = 0


Query: 11  NVCSRTLLVSPPLRTFRSGPLLSRFSVLT------LRCYSSGNDKYNGLNSTT------- 70
           ++C+R +++SP + T +  P +   + +        R +SS     +G NSTT       
Sbjct: 10  SLCARRIILSPRI-THQISPNVPFLAPIAAPAAPKFRFFSS----ESGENSTTAPESSPT 69

Query: 71  -NENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEDDDDELMKE 130
            +  K  LV +DVS +ELKS+I K++ EG+ D+LP + EA+L+R+L  KH + DDEL+++
Sbjct: 70  DSPEKKDLVVEDVSNKELKSRIEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLEK 129

Query: 131 IRERMPGQVEDFKDEESGSDLSELNETDEETED---SSDYEEEDRR 159
           I E +P + +D KDE+  SD  E + TDEE ED   S +Y  E  R
Sbjct: 130 I-ESLPFK-DDVKDEDFESDFEEAHSTDEELEDLYNSPEYVAEKMR 168

[Close]

BLAST of CcUC01G015140 vs. TAIR 10
Match: AT1G73770.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: Ribosomal protein S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 951 Blast hits to 569 proteins in 87 species: Archae - 0; Bacteria - 746; Metazoa - 33; Fungi - 46; Plants - 57; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 4.4e-06
Identity = 35/107 (32.71%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 54  NSTTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEDDDDEL 113
           +S ++ ++    E+ +S EELK +I  F  +G+ D++P +FEA++ RKLSGKH+D DDE+
Sbjct: 49  SSESDSSRGFRTEEVLSKEELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSDDEV 108

Query: 114 MKEIRE---RMPGQVEDFKDEESGSDLSELNETDEETEDSSDYEEED 157
           M  +R+       +V+D   +       + +++D E++D  D +  D
Sbjct: 109 MDVVRKYPVNDAHKVDDIDSDIESDGHGDSSDSDIESDDLRDGDSSD 155

[Close]

BLAST of CcUC01G015140 vs. TAIR 10
Match: AT1G73770.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: Ribosomal protein S24/S35, mitochondrial (TAIR:AT3G18240.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 4.4e-06
Identity = 35/107 (32.71%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 54  NSTTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEDDDDEL 113
           +S ++ ++    E+ +S EELK +I  F  +G+ D++P +FEA++ RKLSGKH+D DDE+
Sbjct: 49  SSESDSSRGFRTEEVLSKEELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSDDEV 108

Query: 114 MKEIRE---RMPGQVEDFKDEESGSDLSELNETDEETEDSSDYEEED 157
           M  +R+       +V+D   +       + +++D E++D  D +  D
Sbjct: 109 MDVVRKYPVNDAHKVDDIDSDIESDGHGDSSDSDIESDDLRDGDSSD 155

The following BLAST results are available for this feature:

BLAST of CcUC01G015140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894045.1	4.8e-55	79.63	uncharacterized protein LOC120082798 [Benincasa hispida]	[more]
XP_023519890.1	1.2e-53	76.69	uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo]	[more]
XP_022924024.1	9.9e-53	75.46	uncharacterized protein LOC111431572 [Cucurbita moschata]	[more]
XP_008461340.1	9.9e-53	76.25	PREDICTED: uncharacterized protein LOC103499929 [Cucumis melo] >TYJ99013.1 uncha...	[more]
KAG7019929.1	3.8e-52	74.23	hypothetical protein SDJN02_18896, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CcUC01G015140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC01G015140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BIA4	4.8e-53	76.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1E804	4.8e-53	75.46	uncharacterized protein LOC111431572 OS=Cucurbita moschata OX=3662 GN=LOC1114315...	[more]
A0A1S3CEX3	4.8e-53	76.25	uncharacterized protein LOC103499929 OS=Cucumis melo OX=3656 GN=LOC103499929 PE=...	[more]
A0A6J1KP40	2.9e-50	75.16	uncharacterized protein LOC111495236 OS=Cucurbita maxima OX=3661 GN=LOC111495236...	[more]
A0A0A0LT17	1.6e-48	74.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042590 PE=4 SV=1	[more]

BLAST of CcUC01G015140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21460.1	2.4e-12	38.32	Ribosomal protein S24/S35, mitochondrial	[more]
AT3G18240.1	5.3e-12	37.35	Ribosomal protein S24/S35, mitochondrial	[more]
AT3G18240.2	5.3e-12	37.35	Ribosomal protein S24/S35, mitochondrial	[more]
AT1G73770.1	4.4e-06	32.71	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G73770.2	4.4e-06	32.71	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC01G015140.1	CcUC01G015140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion