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CcUC01G015090 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGGAATAACTGCTTTTCAGTTTACTTTGTGACCGCCTCTCCATCATGATTCACACCCTACCGGTAGAAGTTCCCTACAACATCGTTATTTCTAGAAGACACCACAATAGGGATCCATAAAAACAGAGCAATTGGGAAGGCTTGTTAACACTTGTTGAACCATGGCAAGATGTACTCTACCAGTATTAGAGTCTCTCCACTTGGCTTATTATCCATTGAATTTTCTCCAGCACAGATATGCAAAAGAATTGAATTTAGGAAAAACCTCCAGGGTAAGGAAGGAGCTAATATTACCGTCGCAAATTCTTTCAGTAGAATCCAAGATGTCAGCAGCCAAACTCTTCGGTAGGCAGATTTTCTACTGAGAAACTGGTTTAGAGATCTTTACCAAGTTCAAAGATGGGAAACCTCCCTTTTCGTCAGGGACTGAAAGAAAAGAGGACAGTATCTGGGATCCCCTTCAAATGATCGGTATATGACTAGTGAGAGATGAACTATGTTCCTATTCTGAAAGGCTTCAACGGTTCCATCTCCTACACCTCTCCCAAAAATTCTACTAAAAGCCGGGTAGAATAACAAAAAGAAAAGAATAGACCTCCTCTAAACTTTCTGACATGAAAGACAAGATATGCACATTGCACACATACAACCTAGGAAGGGGGAACGCCATCAATCTCTACACCAAGAGGTTGTAGTTACAAAAGAATTGTTGTGGTTTGATCACCATCAAGAGGTTGTATATGGCACACTATTGCAAAACAAATCCATCGAAGTAAACTTTTCTTCAAAAGTCTTTTGGTTTCTCTGTTTCCAAATGAGCAAACGGGTGGTCGTGATGTGCATCGCATGAATAATCTGATATTAGATACGCAACCTTCCCTGCACCAGTGTTCTGGTATACTCTAGCCCATATGGTATGGCTGCTACTTTTTGGGATCCACATTCATAATGTTGCACTTATGTTTGTCATTTCAAATGTGTACTTATTGCCATAGAGAGAGTAGAGCATCTGTATTAACATGGTGTTATTGTTCCATTGCGCGCATAGAACAAATCAATTCCTTTCTCTACTTCTTTCAAGCTGTAAGTTTGATTATTCATCGAGCAGTTTGTAGTTTGGACGAGGAAGGATTTTTTATATTCGTTTCCTTTTTTTCCCTTCCCTTTCACCATATCAAACGTACTTGAGAAAAGCATCTTGATTTTATATGGATATTGAGTCTGAGACCACATTCTCCCCTATCCATTGTCTTTATTTGAAGGCGCCGAGGTATTGGAGATAGGAGGGATGGTAGTAGAGGTGGTGATGAAGGGGTTAATGGGAATGGGTCACTTTTCATGTTGCAGCCTGGAGTTGAAGCCCAAGAGGATTCTGATATCAAATCAAGGCTGGTTGCTGGTGATTGGACCGGTGATGGCCTTATTGGGCTGCCAGGGTTGGGACTTTGGAGTAGGAAGAAAAGCATTGCAGTAAGCAGTGGAATGAATATCTCCTGACATCCTTCTCGTCTGAGACTAGCTGCAACGCATTTGAGGACATTTTGGAAGCTTCAGAAAGTCAATTTGCTTACTTACATCAAGATATGGCAACAATTGGTGGGAACAAACAAGGCATATCTGAAGTCCAAGGAGTTGGTGCCTCTACCCCTCATACTTATGCATCAACTGTAGAGCCTCCTTGTCAAGAAGTGTGACTCCCTATCCTCAACTTGTAGCAAGAGCTCCGAGTCCTCGTATTCCTACAGTTGGTGGGAGGATATAGGACTATGGATAAAAGACGTGCTTCTGGTCCAAATTCTTTCAATGGGGTTTCGTTGAAGGCGAGTGTCCCTTTCGACCTAGTGTCTTCTTTTTCTGGCATGAATTTGTCAACAAATGGTATTCTAGATGATGAGAGCCAATTGCGGTCTGATATTCAGCTAGAGATTGATAATCGTCATAACTTCTTCAATCTGCAAACTGATCAAAATGATAAAAAAAGGTATTTCGCGCGAGCCGAGTGACGTAGGTGCACAAGAGTACTTTACGCCACAACCATCTCTTTTTTATAGGTCCGATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATTGATATGCCGGTCATTAGAAGGGCTCATAGGATGGGATCGAAGAGTCAAGCCCTTCTCTTCATTTCATTGATGGGTTGGAAAAATGTTCACCACGTAAGTCATTGGAAGCAAACGGGCAATCGGCTGTGGTCTAAGGACAACAAACTCTAG ATGGGAGGAATAACTGCTTTTCAGTTTACTTTGCGCCGAGGTATTGGAGATAGGAGGGATGGTAGTAGAGGTGGTGATGAAGGGGTTAATGGGAATGGGTCACTTTTCATGTTGCAGCCTGGAGTTGAAGCCCAAGAGGATTCTGATATCAAATCAAGGCTGGTTGCTGGTGATTGGACCGGTGATGGCCTTATTGGGCTGCCAGGGTTGGGACTTTGGAGTAGGAAGAAAAGCATTGCACAAGAGCTCCGAGTCCTCGTATTCCTACAGTTGGTGGGAGGATATAGGACTATGGATAAAAGACGTGCTTCTGGTCCAAATTCTTTCAATGGGGTTTCGTTGAAGGCGAGTGTCCCTTTCGACCTAGTGTCTTCTTTTTCTGGCATGAATTTGTCAACAAATGGTATTCTAGATGATGAGAGCCAATTGCGGTCTGATATTCAGCTAGAGATTGATAATCGTCATAACTTCTTCAATCTGCAAACTGATCAAAATGATAAAAAAAGGTCCGATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATTGATATGCCGGTCATTAGAAGGGCTCATAGGATGGGATCGAAGAGTCAAGCCCTTCTCTTCATTTCATTGATGGGTTGGAAAAATGTTCACCACGTAAGTCATTGGAAGCAAACGGGCAATCGGCTGTGGTCTAAGGACAACAAACTCTAG ATGGGAGGAATAACTGCTTTTCAGTTTACTTTGCGCCGAGGTATTGGAGATAGGAGGGATGGTAGTAGAGGTGGTGATGAAGGGGTTAATGGGAATGGGTCACTTTTCATGTTGCAGCCTGGAGTTGAAGCCCAAGAGGATTCTGATATCAAATCAAGGCTGGTTGCTGGTGATTGGACCGGTGATGGCCTTATTGGGCTGCCAGGGTTGGGACTTTGGAGTAGGAAGAAAAGCATTGCACAAGAGCTCCGAGTCCTCGTATTCCTACAGTTGGTGGGAGGATATAGGACTATGGATAAAAGACGTGCTTCTGGTCCAAATTCTTTCAATGGGGTTTCGTTGAAGGCGAGTGTCCCTTTCGACCTAGTGTCTTCTTTTTCTGGCATGAATTTGTCAACAAATGGTATTCTAGATGATGAGAGCCAATTGCGGTCTGATATTCAGCTAGAGATTGATAATCGTCATAACTTCTTCAATCTGCAAACTGATCAAAATGATAAAAAAAGGTCCGATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATTGATATGCCGGTCATTAGAAGGGCTCATAGGATGGGATCGAAGAGTCAAGCCCTTCTCTTCATTTCATTGATGGGTTGGAAAAATGTTCACCACGTAAGTCATTGGAAGCAAACGGGCAATCGGCTGTGGTCTAAGGACAACAAACTCTAG MGGITAFQFTLRRGIGDRRDGSRGGDEGVNGNGSLFMLQPGVEAQEDSDIKSRLVAGDWTGDGLIGLPGLGLWSRKKSIAQELRVLVFLQLVGGYRTMDKRRASGPNSFNGVSLKASVPFDLVSSFSGMNLSTNGILDDESQLRSDIQLEIDNRHNFFNLQTDQNDKKRSDACCFIWEKRIIDMPVIRRAHRMGSKSQALLFISLMGWKNVHHVSHWKQTGNRLWSKDNKL Homology
BLAST of CcUC01G015090 vs. NCBI nr
Match: XP_038889881.1 (pumilio homolog 1-like [Benincasa hispida]) HSP 1 Score: 202.6 bits (514), Expect = 3.7e-48 Identity = 124/244 (50.82%), Postives = 137/244 (56.15%), Query Frame = 0
BLAST of CcUC01G015090 vs. NCBI nr
Match: XP_008461691.1 (PREDICTED: pumilio homolog 1-like [Cucumis melo] >KAA0050343.1 pumilio-like protein 1-like [Cucumis melo var. makuwa] >TYK03557.1 pumilio-like protein 1-like [Cucumis melo var. makuwa]) HSP 1 Score: 197.2 bits (500), Expect = 1.5e-46 Identity = 125/244 (51.23%), Postives = 136/244 (55.74%), Query Frame = 0
BLAST of CcUC01G015090 vs. NCBI nr
Match: XP_011654958.1 (pumilio homolog 1 [Cucumis sativus] >KGN50567.1 hypothetical protein Csa_021438 [Cucumis sativus]) HSP 1 Score: 193.0 bits (489), Expect = 2.9e-45 Identity = 124/244 (50.82%), Postives = 133/244 (54.51%), Query Frame = 0
BLAST of CcUC01G015090 vs. NCBI nr
Match: XP_023005876.1 (pumilio homolog 1-like [Cucurbita maxima]) HSP 1 Score: 187.2 bits (474), Expect = 1.6e-43 Identity = 120/243 (49.38%), Postives = 130/243 (53.50%), Query Frame = 0
BLAST of CcUC01G015090 vs. NCBI nr
Match: XP_023537110.1 (pumilio homolog 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 186.0 bits (471), Expect = 3.6e-43 Identity = 117/243 (48.15%), Postives = 130/243 (53.50%), Query Frame = 0
BLAST of CcUC01G015090 vs. ExPASy Swiss-Prot
Match: Q9ZW07 (Pumilio homolog 1 OS=Arabidopsis thaliana OX=3702 GN=APUM1 PE=1 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 1.5e-07 Identity = 60/225 (26.67%), Postives = 83/225 (36.89%), Query Frame = 0
BLAST of CcUC01G015090 vs. ExPASy Swiss-Prot
Match: Q9ZW06 (Pumilio homolog 2 OS=Arabidopsis thaliana OX=3702 GN=APUM2 PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 6.2e-06 Identity = 45/148 (30.41%), Postives = 70/148 (47.30%), Query Frame = 0
BLAST of CcUC01G015090 vs. ExPASy TrEMBL
Match: A0A5D3BVQ2 (Pumilio-like protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00540 PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 7.5e-47 Identity = 125/244 (51.23%), Postives = 136/244 (55.74%), Query Frame = 0
BLAST of CcUC01G015090 vs. ExPASy TrEMBL
Match: A0A1S3CFB3 (pumilio homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103500233 PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 7.5e-47 Identity = 125/244 (51.23%), Postives = 136/244 (55.74%), Query Frame = 0
BLAST of CcUC01G015090 vs. ExPASy TrEMBL
Match: A0A0A0KQA7 (PUM-HD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182720 PE=4 SV=1) HSP 1 Score: 193.0 bits (489), Expect = 1.4e-45 Identity = 124/244 (50.82%), Postives = 133/244 (54.51%), Query Frame = 0
BLAST of CcUC01G015090 vs. ExPASy TrEMBL
Match: A0A6J1KW82 (pumilio homolog 1-like OS=Cucurbita maxima OX=3661 GN=LOC111498721 PE=4 SV=1) HSP 1 Score: 187.2 bits (474), Expect = 7.8e-44 Identity = 120/243 (49.38%), Postives = 130/243 (53.50%), Query Frame = 0
BLAST of CcUC01G015090 vs. ExPASy TrEMBL
Match: A0A6J1GX38 (pumilio homolog 1-like OS=Cucurbita moschata OX=3662 GN=LOC111458338 PE=4 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 2.5e-42 Identity = 115/243 (47.33%), Postives = 129/243 (53.09%), Query Frame = 0
BLAST of CcUC01G015090 vs. TAIR 10
Match: AT2G29200.1 (pumilio 1 ) HSP 1 Score: 58.2 bits (139), Expect = 1.0e-08 Identity = 60/225 (26.67%), Postives = 83/225 (36.89%), Query Frame = 0
BLAST of CcUC01G015090 vs. TAIR 10
Match: AT2G29190.1 (pumilio 2 ) HSP 1 Score: 52.8 bits (125), Expect = 4.4e-07 Identity = 45/148 (30.41%), Postives = 70/148 (47.30%), Query Frame = 0
BLAST of CcUC01G015090 vs. TAIR 10
Match: AT2G29190.2 (pumilio 2 ) HSP 1 Score: 52.8 bits (125), Expect = 4.4e-07 Identity = 45/148 (30.41%), Postives = 70/148 (47.30%), Query Frame = 0
BLAST of CcUC01G015090 vs. TAIR 10
Match: AT2G29140.1 (pumilio 3 ) HSP 1 Score: 44.7 bits (104), Expect = 1.2e-04 Identity = 27/74 (36.49%), Postives = 39/74 (52.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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