CcUC01G015090 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC01G015090
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	pumilio homolog 1-like
Location	CicolChr01: 27867646 .. 27869890 (+)
RNA-Seq Expression	CcUC01G015090
Synteny	CcUC01G015090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGAATAACTGCTTTTCAGTTTACTTTGTGACCGCCTCTCCATCATGATTCACACCCTACCGGTAGAAGTTCCCTACAACATCGTTATTTCTAGAAGACACCACAATAGGGATCCATAAAAACAGAGCAATTGGGAAGGCTTGTTAACACTTGTTGAACCATGGCAAGATGTACTCTACCAGTATTAGAGTCTCTCCACTTGGCTTATTATCCATTGAATTTTCTCCAGCACAGATATGCAAAAGAATTGAATTTAGGAAAAACCTCCAGGGTAAGGAAGGAGCTAATATTACCGTCGCAAATTCTTTCAGTAGAATCCAAGATGTCAGCAGCCAAACTCTTCGGTAGGCAGATTTTCTACTGAGAAACTGGTTTAGAGATCTTTACCAAGTTCAAAGATGGGAAACCTCCCTTTTCGTCAGGGACTGAAAGAAAAGAGGACAGTATCTGGGATCCCCTTCAAATGATCGGTATATGACTAGTGAGAGATGAACTATGTTCCTATTCTGAAAGGCTTCAACGGTTCCATCTCCTACACCTCTCCCAAAAATTCTACTAAAAGCCGGGTAGAATAACAAAAAGAAAAGAATAGACCTCCTCTAAACTTTCTGACATGAAAGACAAGATATGCACATTGCACACATACAACCTAGGAAGGGGGAACGCCATCAATCTCTACACCAAGAGGTTGTAGTTACAAAAGAATTGTTGTGGTTTGATCACCATCAAGAGGTTGTATATGGCACACTATTGCAAAACAAATCCATCGAAGTAAACTTTTCTTCAAAAGTCTTTTGGTTTCTCTGTTTCCAAATGAGCAAACGGGTGGTCGTGATGTGCATCGCATGAATAATCTGATATTAGATACGCAACCTTCCCTGCACCAGTGTTCTGGTATACTCTAGCCCATATGGTATGGCTGCTACTTTTTGGGATCCACATTCATAATGTTGCACTTATGTTTGTCATTTCAAATGTGTACTTATTGCCATAGAGAGAGTAGAGCATCTGTATTAACATGGTGTTATTGTTCCATTGCGCGCATAGAACAAATCAATTCCTTTCTCTACTTCTTTCAAGCTGTAAGTTTGATTATTCATCGAGCAGTTTGTAGTTTGGACGAGGAAGGATTTTTTATATTCGTTTCCTTTTTTTCCCTTCCCTTTCACCATATCAAACGTACTTGAGAAAAGCATCTTGATTTTATATGGATATTGAGTCTGAGACCACATTCTCCCCTATCCATTGTCTTTATTTGAAGGCGCCGAGGTATTGGAGATAGGAGGGATGGTAGTAGAGGTGGTGATGAAGGGGTTAATGGGAATGGGTCACTTTTCATGTTGCAGCCTGGAGTTGAAGCCCAAGAGGATTCTGATATCAAATCAAGGCTGGTTGCTGGTGATTGGACCGGTGATGGCCTTATTGGGCTGCCAGGGTTGGGACTTTGGAGTAGGAAGAAAAGCATTGCAGTAAGCAGTGGAATGAATATCTCCTGACATCCTTCTCGTCTGAGACTAGCTGCAACGCATTTGAGGACATTTTGGAAGCTTCAGAAAGTCAATTTGCTTACTTACATCAAGATATGGCAACAATTGGTGGGAACAAACAAGGCATATCTGAAGTCCAAGGAGTTGGTGCCTCTACCCCTCATACTTATGCATCAACTGTAGAGCCTCCTTGTCAAGAAGTGTGACTCCCTATCCTCAACTTGTAGCAAGAGCTCCGAGTCCTCGTATTCCTACAGTTGGTGGGAGGATATAGGACTATGGATAAAAGACGTGCTTCTGGTCCAAATTCTTTCAATGGGGTTTCGTTGAAGGCGAGTGTCCCTTTCGACCTAGTGTCTTCTTTTTCTGGCATGAATTTGTCAACAAATGGTATTCTAGATGATGAGAGCCAATTGCGGTCTGATATTCAGCTAGAGATTGATAATCGTCATAACTTCTTCAATCTGCAAACTGATCAAAATGATAAAAAAAGGTATTTCGCGCGAGCCGAGTGACGTAGGTGCACAAGAGTACTTTACGCCACAACCATCTCTTTTTTATAGGTCCGATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATTGATATGCCGGTCATTAGAAGGGCTCATAGGATGGGATCGAAGAGTCAAGCCCTTCTCTTCATTTCATTGATGGGTTGGAAAAATGTTCACCACGTAAGTCATTGGAAGCAAACGGGCAATCGGCTGTGGTCTAAGGACAACAAACTCTAG

mRNA sequence

ATGGGAGGAATAACTGCTTTTCAGTTTACTTTGCGCCGAGGTATTGGAGATAGGAGGGATGGTAGTAGAGGTGGTGATGAAGGGGTTAATGGGAATGGGTCACTTTTCATGTTGCAGCCTGGAGTTGAAGCCCAAGAGGATTCTGATATCAAATCAAGGCTGGTTGCTGGTGATTGGACCGGTGATGGCCTTATTGGGCTGCCAGGGTTGGGACTTTGGAGTAGGAAGAAAAGCATTGCACAAGAGCTCCGAGTCCTCGTATTCCTACAGTTGGTGGGAGGATATAGGACTATGGATAAAAGACGTGCTTCTGGTCCAAATTCTTTCAATGGGGTTTCGTTGAAGGCGAGTGTCCCTTTCGACCTAGTGTCTTCTTTTTCTGGCATGAATTTGTCAACAAATGGTATTCTAGATGATGAGAGCCAATTGCGGTCTGATATTCAGCTAGAGATTGATAATCGTCATAACTTCTTCAATCTGCAAACTGATCAAAATGATAAAAAAAGGTCCGATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATTGATATGCCGGTCATTAGAAGGGCTCATAGGATGGGATCGAAGAGTCAAGCCCTTCTCTTCATTTCATTGATGGGTTGGAAAAATGTTCACCACGTAAGTCATTGGAAGCAAACGGGCAATCGGCTGTGGTCTAAGGACAACAAACTCTAG

Coding sequence (CDS)

ATGGGAGGAATAACTGCTTTTCAGTTTACTTTGCGCCGAGGTATTGGAGATAGGAGGGATGGTAGTAGAGGTGGTGATGAAGGGGTTAATGGGAATGGGTCACTTTTCATGTTGCAGCCTGGAGTTGAAGCCCAAGAGGATTCTGATATCAAATCAAGGCTGGTTGCTGGTGATTGGACCGGTGATGGCCTTATTGGGCTGCCAGGGTTGGGACTTTGGAGTAGGAAGAAAAGCATTGCACAAGAGCTCCGAGTCCTCGTATTCCTACAGTTGGTGGGAGGATATAGGACTATGGATAAAAGACGTGCTTCTGGTCCAAATTCTTTCAATGGGGTTTCGTTGAAGGCGAGTGTCCCTTTCGACCTAGTGTCTTCTTTTTCTGGCATGAATTTGTCAACAAATGGTATTCTAGATGATGAGAGCCAATTGCGGTCTGATATTCAGCTAGAGATTGATAATCGTCATAACTTCTTCAATCTGCAAACTGATCAAAATGATAAAAAAAGGTCCGATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATTGATATGCCGGTCATTAGAAGGGCTCATAGGATGGGATCGAAGAGTCAAGCCCTTCTCTTCATTTCATTGATGGGTTGGAAAAATGTTCACCACGTAAGTCATTGGAAGCAAACGGGCAATCGGCTGTGGTCTAAGGACAACAAACTCTAG

Protein sequence

MGGITAFQFTLRRGIGDRRDGSRGGDEGVNGNGSLFMLQPGVEAQEDSDIKSRLVAGDWTGDGLIGLPGLGLWSRKKSIAQELRVLVFLQLVGGYRTMDKRRASGPNSFNGVSLKASVPFDLVSSFSGMNLSTNGILDDESQLRSDIQLEIDNRHNFFNLQTDQNDKKRSDACCFIWEKRIIDMPVIRRAHRMGSKSQALLFISLMGWKNVHHVSHWKQTGNRLWSKDNKL

Homology

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BLAST of CcUC01G015090 vs. NCBI nr
Match: XP_038889881.1 (pumilio homolog 1-like [Benincasa hispida])

HSP 1 Score: 202.6 bits (514), Expect = 3.7e-48
Identity = 124/244 (50.82%), Postives = 137/244 (56.15%), Query Frame = 0


Query: 14  GIGDRRDGSRGGDEGVNGNGSLFMLQPGVEAQEDSDIKSRLVAGDWTGDGLIGLPGLGLW 73
           GIGDRR+GSRGGDEGVNGNGSLFMLQPGV A+EDS ++ R VAGDWTGDGLIGLPGLGL 
Sbjct: 141 GIGDRREGSRGGDEGVNGNGSLFMLQPGVGAKEDSGVELRRVAGDWTGDGLIGLPGLGLG 200

Query: 74  SRKKSIAQELRVLVF-----------------------------------LQLVGGYR-- 133
           SRKKSIA+ L+  +                                    +  +GG +  
Sbjct: 201 SRKKSIAEILQDDISNGINISRHPSRPTSRNAFEDTLEASESQFAYLHQDMATIGGNKQG 260

Query: 134 ---------------------------------------------------TMDKRRASG 170
                                                              TMDKR ASG
Sbjct: 261 ISAVQGVGATTPHTYASAVGASLSRSATPDPQLVARAPSPRIPPVGGRISSTMDKRSASG 320

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BLAST of CcUC01G015090 vs. NCBI nr
Match: XP_008461691.1 (PREDICTED: pumilio homolog 1-like [Cucumis melo] >KAA0050343.1 pumilio-like protein 1-like [Cucumis melo var. makuwa] >TYK03557.1 pumilio-like protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 197.2 bits (500), Expect = 1.5e-46
Identity = 125/244 (51.23%), Postives = 136/244 (55.74%), Query Frame = 0


Query: 14  GIGDRRDGSRGGDEGVNGNGSLFMLQPGVEAQEDSDIKSRLVAGDWTGDGLIGLPGLGLW 73
           GIGDRR+GSRGGDEGVN NGSLFMLQPGV  +EDS I+SR VAGDWTGDGLIGLPGLGL 
Sbjct: 139 GIGDRREGSRGGDEGVNRNGSLFMLQPGVGTKEDSGIESRRVAGDWTGDGLIGLPGLGLG 198

Query: 74  SRKKSIAQELRVLVF-----------------------------------LQLVGGYR-- 133
           SRKKSIA+ L+  +                                    +  +GG +  
Sbjct: 199 SRKKSIAEILQDDISNGMNISRHPSRPTSRNAFEDSLEASESQFAYLHQDMATIGGNKQG 258

Query: 134 ---------------------------------------------------TMDKRRASG 170
                                                              TM+KR ASG
Sbjct: 259 ISAVQGVGASAPHTYASAVGASLSRSATPDPQLVARAPSPRIPPVGGRISSTMEKRNASG 318

[Close]

BLAST of CcUC01G015090 vs. NCBI nr
Match: XP_011654958.1 (pumilio homolog 1 [Cucumis sativus] >KGN50567.1 hypothetical protein Csa_021438 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 2.9e-45
Identity = 124/244 (50.82%), Postives = 133/244 (54.51%), Query Frame = 0


Query: 14  GIGDRRDGSRGGDEGVNGNGSLFMLQPGVEAQEDSDIKSRLVAGDWTGDGLIGLPGLGLW 73
           GIGDRR+GSRGGDEGVN NGSLFMLQPGV  +ED  I SR VA DWTGDGLIGLPGLGL 
Sbjct: 143 GIGDRREGSRGGDEGVNRNGSLFMLQPGVGTKEDPGIDSRRVARDWTGDGLIGLPGLGLG 202

Query: 74  SRKKSIAQELRVLVF-----------------------------------LQLVGGYR-- 133
           SRKKSIA+ L+  +                                    +  +GG +  
Sbjct: 203 SRKKSIAEILQDDISNGMNISRHPSRPTSRNAFEDTLEASESQFAYLHQDMATIGGNKQG 262

Query: 134 ---------------------------------------------------TMDKRRASG 170
                                                              TMDKR ASG
Sbjct: 263 LSAVQGVGASAPHTYASAVGASLSRSATPDPQLVARAPSPRIPPVGGRISSTMDKRNASG 322

[Close]

BLAST of CcUC01G015090 vs. NCBI nr
Match: XP_023005876.1 (pumilio homolog 1-like [Cucurbita maxima])

HSP 1 Score: 187.2 bits (474), Expect = 1.6e-43
Identity = 120/243 (49.38%), Postives = 130/243 (53.50%), Query Frame = 0


Query: 14  GIGDRRDGSRGGDEGVNGNGSLFMLQPGVEAQEDSDIKSRLVAGDWTGDGLIGLPGLGLW 73
           GIGDRR+G RGGDEGVNGNGSLFMLQPGV A EDS I+SR VAGDW GDGLIGLPGLG+ 
Sbjct: 140 GIGDRREGCRGGDEGVNGNGSLFMLQPGVGANEDSGIESRRVAGDWAGDGLIGLPGLGVG 199

Query: 74  SRKKSIAQELR-------------------------------VLVFLQ------------ 133
           SRKKSIA+ L+                                  +L             
Sbjct: 200 SRKKSIAEILQDDLSNGITISRHPSRPTSRNAFDETLEASESQFAYLHQDMATIGGNKQG 259

Query: 134 -------------------------------------------LVGG--YRTMDKRRASG 169
                                                      LVGG    T+DKR A G
Sbjct: 260 ISAVQGAGASTPHTYASAVGASLSRTATPDPQIIARAPSPRIPLVGGRVSSTVDKRSACG 319

[Close]

BLAST of CcUC01G015090 vs. NCBI nr
Match: XP_023537110.1 (pumilio homolog 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.0 bits (471), Expect = 3.6e-43
Identity = 117/243 (48.15%), Postives = 130/243 (53.50%), Query Frame = 0


Query: 14  GIGDRRDGSRGGDEGVNGNGSLFMLQPGVEAQEDSDIKSRLVAGDWTGDGLIGLPGLGLW 73
           GIGDRR+G RGGDEGVNGNGSLFMLQPGV A EDS I+SR VAGDW GDGLIGLPGLG+ 
Sbjct: 140 GIGDRREGCRGGDEGVNGNGSLFMLQPGVGANEDSGIESRRVAGDWAGDGLIGLPGLGVG 199

Query: 74  SRKKSIAQELR-----------------------------------VLVFLQLVGGYR-- 133
           SRKKSIA+ L+                                   +   +  +GG +  
Sbjct: 200 SRKKSIAEILQDDLSNGITISRHPSRPTSRNAFDETLEASESQFAYLHQDMATIGGNKQG 259

Query: 134 ---------------------------------------------------TMDKRRASG 169
                                                              T+DKR A G
Sbjct: 260 ISAVQGAGASTPHTYASAVGASLSRTATPDPQIIARAPSPRIPQVGGRVSSTVDKRSACG 319

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BLAST of CcUC01G015090 vs. ExPASy Swiss-Prot
Match: Q9ZW07 (Pumilio homolog 1 OS=Arabidopsis thaliana OX=3702 GN=APUM1 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-07
Identity = 60/225 (26.67%), Postives = 83/225 (36.89%), Query Frame = 0


Query: 14  GIGDRRDGSRGGDEGVNGNGSLFMLQPGVEAQEDSDIKSRLVAGDWTGDGLIGLPGLGLW 73
           G+GDRR         VN N SLF + PG E +     K+   A +W  +GLIGLPGLGL 
Sbjct: 143 GVGDRRK--------VNDNRSLFSMPPGFEGE-----KTGASASEWDANGLIGLPGLGLG 202

Query: 74  SRKKSIAQELRVLV---------------------------------------------- 133
            ++KS A   +  +                                              
Sbjct: 203 GKQKSFADIFQADMGHGHPVAQQPSRPASRNTFDENVDSNNNLSPSASQGIGAPSPYSYA 262

Query: 134 ------------------------FLQLVGGYR--TMDKRRASGPNSFNGVSLKASVPFD 167
                                    L  +G  R  + DKR  S  + FNGV+   +   D
Sbjct: 263 AVLGSSLSRNGTPDPQAIARVPSPCLTPIGSGRMSSNDKRNTSNQSPFNGVTSGLNESSD 322

[Close]

BLAST of CcUC01G015090 vs. ExPASy Swiss-Prot
Match: Q9ZW06 (Pumilio homolog 2 OS=Arabidopsis thaliana OX=3702 GN=APUM2 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.2e-06
Identity = 45/148 (30.41%), Postives = 70/148 (47.30%), Query Frame = 0


Query: 14  GIGDRRDGSRGGDEGVNGNGSLFMLQPGVEAQEDSDI---KSRLVAGDWTGDGLIGLPGL 73
           G+GDRR         VN + SLF + PG + ++  +    K+   + +W  +GLIGLPGL
Sbjct: 143 GVGDRRK--------VNDSQSLFSMPPGFDQRKQHEFEVEKTSASSSEWDANGLIGLPGL 202

Query: 74  GLWSRKKSIAQELRVLVFLQLVGGYRTMDKR--RASGPNSF-------NGVSLKASVPFD 133
           G+  ++KS A      +F   +G    + K+  R +  N+F       N +S  AS    
Sbjct: 203 GIGGKQKSFAD-----IFQADMGHGHPVTKQPSRPASRNTFDENVDSKNNLSPSASQGIG 262

Query: 134 LVSSFS-----GMNLSTNGILDDESQLR 145
             S +S     G +LS NG  D ++  R
Sbjct: 263 APSPYSYAAVLGSSLSRNGTPDPQAIAR 277

[Close]

BLAST of CcUC01G015090 vs. ExPASy TrEMBL
Match: A0A5D3BVQ2 (Pumilio-like protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00540 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 7.5e-47
Identity = 125/244 (51.23%), Postives = 136/244 (55.74%), Query Frame = 0


Query: 14  GIGDRRDGSRGGDEGVNGNGSLFMLQPGVEAQEDSDIKSRLVAGDWTGDGLIGLPGLGLW 73
           GIGDRR+GSRGGDEGVN NGSLFMLQPGV  +EDS I+SR VAGDWTGDGLIGLPGLGL 
Sbjct: 139 GIGDRREGSRGGDEGVNRNGSLFMLQPGVGTKEDSGIESRRVAGDWTGDGLIGLPGLGLG 198

Query: 74  SRKKSIAQELRVLVF-----------------------------------LQLVGGYR-- 133
           SRKKSIA+ L+  +                                    +  +GG +  
Sbjct: 199 SRKKSIAEILQDDISNGMNISRHPSRPTSRNAFEDSLEASESQFAYLHQDMATIGGNKQG 258

Query: 134 ---------------------------------------------------TMDKRRASG 170
                                                              TM+KR ASG
Sbjct: 259 ISAVQGVGASAPHTYASAVGASLSRSATPDPQLVARAPSPRIPPVGGRISSTMEKRNASG 318

[Close]

BLAST of CcUC01G015090 vs. ExPASy TrEMBL
Match: A0A1S3CFB3 (pumilio homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103500233 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 7.5e-47
Identity = 125/244 (51.23%), Postives = 136/244 (55.74%), Query Frame = 0


Query: 14  GIGDRRDGSRGGDEGVNGNGSLFMLQPGVEAQEDSDIKSRLVAGDWTGDGLIGLPGLGLW 73
           GIGDRR+GSRGGDEGVN NGSLFMLQPGV  +EDS I+SR VAGDWTGDGLIGLPGLGL 
Sbjct: 139 GIGDRREGSRGGDEGVNRNGSLFMLQPGVGTKEDSGIESRRVAGDWTGDGLIGLPGLGLG 198

Query: 74  SRKKSIAQELRVLVF-----------------------------------LQLVGGYR-- 133
           SRKKSIA+ L+  +                                    +  +GG +  
Sbjct: 199 SRKKSIAEILQDDISNGMNISRHPSRPTSRNAFEDSLEASESQFAYLHQDMATIGGNKQG 258

Query: 134 ---------------------------------------------------TMDKRRASG 170
                                                              TM+KR ASG
Sbjct: 259 ISAVQGVGASAPHTYASAVGASLSRSATPDPQLVARAPSPRIPPVGGRISSTMEKRNASG 318

[Close]

BLAST of CcUC01G015090 vs. ExPASy TrEMBL
Match: A0A0A0KQA7 (PUM-HD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182720 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.4e-45
Identity = 124/244 (50.82%), Postives = 133/244 (54.51%), Query Frame = 0


Query: 14  GIGDRRDGSRGGDEGVNGNGSLFMLQPGVEAQEDSDIKSRLVAGDWTGDGLIGLPGLGLW 73
           GIGDRR+GSRGGDEGVN NGSLFMLQPGV  +ED  I SR VA DWTGDGLIGLPGLGL 
Sbjct: 143 GIGDRREGSRGGDEGVNRNGSLFMLQPGVGTKEDPGIDSRRVARDWTGDGLIGLPGLGLG 202

Query: 74  SRKKSIAQELRVLVF-----------------------------------LQLVGGYR-- 133
           SRKKSIA+ L+  +                                    +  +GG +  
Sbjct: 203 SRKKSIAEILQDDISNGMNISRHPSRPTSRNAFEDTLEASESQFAYLHQDMATIGGNKQG 262

Query: 134 ---------------------------------------------------TMDKRRASG 170
                                                              TMDKR ASG
Sbjct: 263 LSAVQGVGASAPHTYASAVGASLSRSATPDPQLVARAPSPRIPPVGGRISSTMDKRNASG 322

[Close]

BLAST of CcUC01G015090 vs. ExPASy TrEMBL
Match: A0A6J1KW82 (pumilio homolog 1-like OS=Cucurbita maxima OX=3661 GN=LOC111498721 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 7.8e-44
Identity = 120/243 (49.38%), Postives = 130/243 (53.50%), Query Frame = 0


Query: 14  GIGDRRDGSRGGDEGVNGNGSLFMLQPGVEAQEDSDIKSRLVAGDWTGDGLIGLPGLGLW 73
           GIGDRR+G RGGDEGVNGNGSLFMLQPGV A EDS I+SR VAGDW GDGLIGLPGLG+ 
Sbjct: 140 GIGDRREGCRGGDEGVNGNGSLFMLQPGVGANEDSGIESRRVAGDWAGDGLIGLPGLGVG 199

Query: 74  SRKKSIAQELR-------------------------------VLVFLQ------------ 133
           SRKKSIA+ L+                                  +L             
Sbjct: 200 SRKKSIAEILQDDLSNGITISRHPSRPTSRNAFDETLEASESQFAYLHQDMATIGGNKQG 259

Query: 134 -------------------------------------------LVGG--YRTMDKRRASG 169
                                                      LVGG    T+DKR A G
Sbjct: 260 ISAVQGAGASTPHTYASAVGASLSRTATPDPQIIARAPSPRIPLVGGRVSSTVDKRSACG 319

[Close]

BLAST of CcUC01G015090 vs. ExPASy TrEMBL
Match: A0A6J1GX38 (pumilio homolog 1-like OS=Cucurbita moschata OX=3662 GN=LOC111458338 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.5e-42
Identity = 115/243 (47.33%), Postives = 129/243 (53.09%), Query Frame = 0


Query: 14  GIGDRRDGSRGGDEGVNGNGSLFMLQPGVEAQEDSDIKSRLVAGDWTGDGLIGLPGLGLW 73
           GIGDRR+G RGGDEG NGNGSLFMLQ GV A EDS I+SR VAGDW GDGLIGLPGLG+ 
Sbjct: 140 GIGDRREGCRGGDEGANGNGSLFMLQAGVGANEDSGIESRRVAGDWAGDGLIGLPGLGVG 199

Query: 74  SRKKSIAQELR-----------------------------------VLVFLQLVGGYR-- 133
           SRKKSIA+ L+                                   +   +  +GG +  
Sbjct: 200 SRKKSIAEILQDDLSNGITISRHPSRPTSRNAFDETLEASESQFAYLHQDMATIGGNKQG 259

Query: 134 ---------------------------------------------------TMDKRRASG 169
                                                              T+DKR A G
Sbjct: 260 ISAVQGAGASTPHTYASAVGASLSRTTTPDPQIIARAPSPRIPQVGGRVSSTVDKRSACG 319

[Close]

BLAST of CcUC01G015090 vs. TAIR 10
Match: AT2G29200.1 (pumilio 1 )

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-08
Identity = 60/225 (26.67%), Postives = 83/225 (36.89%), Query Frame = 0


Query: 14  GIGDRRDGSRGGDEGVNGNGSLFMLQPGVEAQEDSDIKSRLVAGDWTGDGLIGLPGLGLW 73
           G+GDRR         VN N SLF + PG E +     K+   A +W  +GLIGLPGLGL 
Sbjct: 143 GVGDRRK--------VNDNRSLFSMPPGFEGE-----KTGASASEWDANGLIGLPGLGLG 202

Query: 74  SRKKSIAQELRVLV---------------------------------------------- 133
            ++KS A   +  +                                              
Sbjct: 203 GKQKSFADIFQADMGHGHPVAQQPSRPASRNTFDENVDSNNNLSPSASQGIGAPSPYSYA 262

Query: 134 ------------------------FLQLVGGYR--TMDKRRASGPNSFNGVSLKASVPFD 167
                                    L  +G  R  + DKR  S  + FNGV+   +   D
Sbjct: 263 AVLGSSLSRNGTPDPQAIARVPSPCLTPIGSGRMSSNDKRNTSNQSPFNGVTSGLNESSD 322

[Close]

BLAST of CcUC01G015090 vs. TAIR 10
Match: AT2G29190.1 (pumilio 2 )

HSP 1 Score: 52.8 bits (125), Expect = 4.4e-07
Identity = 45/148 (30.41%), Postives = 70/148 (47.30%), Query Frame = 0


Query: 14  GIGDRRDGSRGGDEGVNGNGSLFMLQPGVEAQEDSDI---KSRLVAGDWTGDGLIGLPGL 73
           G+GDRR         VN + SLF + PG + ++  +    K+   + +W  +GLIGLPGL
Sbjct: 143 GVGDRRK--------VNDSQSLFSMPPGFDQRKQHEFEVEKTSASSSEWDANGLIGLPGL 202

Query: 74  GLWSRKKSIAQELRVLVFLQLVGGYRTMDKR--RASGPNSF-------NGVSLKASVPFD 133
           G+  ++KS A      +F   +G    + K+  R +  N+F       N +S  AS    
Sbjct: 203 GIGGKQKSFAD-----IFQADMGHGHPVTKQPSRPASRNTFDENVDSKNNLSPSASQGIG 262

Query: 134 LVSSFS-----GMNLSTNGILDDESQLR 145
             S +S     G +LS NG  D ++  R
Sbjct: 263 APSPYSYAAVLGSSLSRNGTPDPQAIAR 277

[Close]

BLAST of CcUC01G015090 vs. TAIR 10
Match: AT2G29190.2 (pumilio 2 )

HSP 1 Score: 52.8 bits (125), Expect = 4.4e-07
Identity = 45/148 (30.41%), Postives = 70/148 (47.30%), Query Frame = 0


Query: 14  GIGDRRDGSRGGDEGVNGNGSLFMLQPGVEAQEDSDI---KSRLVAGDWTGDGLIGLPGL 73
           G+GDRR         VN + SLF + PG + ++  +    K+   + +W  +GLIGLPGL
Sbjct: 143 GVGDRRK--------VNDSQSLFSMPPGFDQRKQHEFEVEKTSASSSEWDANGLIGLPGL 202

Query: 74  GLWSRKKSIAQELRVLVFLQLVGGYRTMDKR--RASGPNSF-------NGVSLKASVPFD 133
           G+  ++KS A      +F   +G    + K+  R +  N+F       N +S  AS    
Sbjct: 203 GIGGKQKSFAD-----IFQADMGHGHPVTKQPSRPASRNTFDENVDSKNNLSPSASQGIG 262

Query: 134 LVSSFS-----GMNLSTNGILDDESQLR 145
             S +S     G +LS NG  D ++  R
Sbjct: 263 APSPYSYAAVLGSSLSRNGTPDPQAIAR 277

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BLAST of CcUC01G015090 vs. TAIR 10
Match: AT2G29140.1 (pumilio 3 )

HSP 1 Score: 44.7 bits (104), Expect = 1.2e-04
Identity = 27/74 (36.49%), Postives = 39/74 (52.70%), Query Frame = 0


Query: 93  GGYRTMDKRRASGPNSFNGVSLKASVPFDLVSSFSGMNLSTNGILDDESQLRSDIQLEID 152
           G   + DKR  S  + FNGV+   +   DLV++ SG+NLS  G LD+  Q   D++    
Sbjct: 277 GRVSSNDKRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSGTGGLDERGQAEQDVE---K 336

Query: 153 NRHNFFNLQTDQND 167
            R+  F LQ   N+
Sbjct: 337 VRNYMFGLQDGHNE 347

The following BLAST results are available for this feature:

BLAST of CcUC01G015090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889881.1	3.7e-48	50.82	pumilio homolog 1-like [Benincasa hispida]	[more]
XP_008461691.1	1.5e-46	51.23	PREDICTED: pumilio homolog 1-like [Cucumis melo] >KAA0050343.1 pumilio-like prot...	[more]
XP_011654958.1	2.9e-45	50.82	pumilio homolog 1 [Cucumis sativus] >KGN50567.1 hypothetical protein Csa_021438 ...	[more]
XP_023005876.1	1.6e-43	49.38	pumilio homolog 1-like [Cucurbita maxima]	[more]
XP_023537110.1	3.6e-43	48.15	pumilio homolog 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CcUC01G015090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZW07	1.5e-07	26.67	Pumilio homolog 1 OS=Arabidopsis thaliana OX=3702 GN=APUM1 PE=1 SV=1	[more]
Q9ZW06	6.2e-06	30.41	Pumilio homolog 2 OS=Arabidopsis thaliana OX=3702 GN=APUM2 PE=1 SV=1	[more]

BLAST of CcUC01G015090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BVQ2	7.5e-47	51.23	Pumilio-like protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3CFB3	7.5e-47	51.23	pumilio homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103500233 PE=4 SV=1	[more]
A0A0A0KQA7	1.4e-45	50.82	PUM-HD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182720 PE=4...	[more]
A0A6J1KW82	7.8e-44	49.38	pumilio homolog 1-like OS=Cucurbita maxima OX=3661 GN=LOC111498721 PE=4 SV=1	[more]
A0A6J1GX38	2.5e-42	47.33	pumilio homolog 1-like OS=Cucurbita moschata OX=3662 GN=LOC111458338 PE=4 SV=1	[more]

BLAST of CcUC01G015090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29200.1	1.0e-08	26.67	pumilio 1	[more]
AT2G29190.1	4.4e-07	30.41	pumilio 2	[more]
AT2G29190.2	4.4e-07	30.41	pumilio 2	[more]
AT2G29140.1	1.2e-04	36.49	pumilio 3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012940	Nucleic acid binding NABP	PFAM	PF07990	NABP	coord: 95..169 e-value: 8.8E-15 score: 55.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC01G015090.1	CcUC01G015090.1	mRNA