CcUC01G011780 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC01G011780
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRNase H domain-containing protein
LocationCicolChr01: 20346397 .. 20346882 (-)
RNA-Seq ExpressionCcUC01G011780
SyntenyCcUC01G011780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCAGGCCTATTTGTGACTTGTTAGAGTTTGTGGCTGGTAATTTTGATGAAACAAACTTTCTGCGATTTGAGGTAGCTTGCTGCGCAATATGGGAAGATAGAAACAAAGTCTATGAAAATTGTCTGTTGGCGCCGATGGGTTTTAAAGGTTGAGTGGATGATGATATTTTGAAGACAGGGAGACCATCTGTGGTTGGTGTGGATGGTCTGAGGCATGGGTTGAGGGTTGTTCTGAGTGAGGCTGTTGGTCATCTGAGACCGAGGGCCTGGTGTTCGCCTGCTGGTGGTTGGCTGAAGTTGAACGTTGATGTGGCTTGTCACCTTGATAAGCCAAGTGTTGGGTTGGGCGCTATTATCCGTAATGATTGGGGGGCTCTAATTGTAAGTGCAAGTGAGTGTTTGTCCTGGGTTTTTGCAGTAGAAGCGGGCGAGATCTTGACAATGTTTGAGGGGTTACGTTTGGTTGAAGCGTGTGGCTGTGCTAAT

mRNA sequence

TCCAGGCCTATTTGTGACTTGTTAGAGTTTGTGGCTGGTAATTTTGATGAAACAAACTTTCTGCGATTTGAGGTAGCTTGCTGCGCAATATGGGAAGATAGAAACAAAGTCTATGAAAATTGGAGACCATCTGTGGTTGGTGTGGATGGTCTGAGGCATGGGTTGAGGGTTGTTCTGAGTGAGGCTGTTGGTCATCTGAGACCGAGGGCCTGGTGTTCGCCTGCTGGTGGTTGGCTGAAGTTGAACGTTGATGTGGCTTGTCACCTTGATAAGCCAAGTGTTGGGTTGGGCGCTATTATCCGTAATGATTGGGGGGCTCTAATTGTAAGTGCAAGTGAGTGTTTGTCCTGGGTTTTTGCAGTAGAAGCGGGCGAGATCTTGACAATGTTTGAGGGGTTACGTTTGGTTGAAGCGTGTGGCTGTGCTAAT

Coding sequence (CDS)

TCCAGGCCTATTTGTGACTTGTTAGAGTTTGTGGCTGGTAATTTTGATGAAACAAACTTTCTGCGATTTGAGGTAGCTTGCTGCGCAATATGGGAAGATAGAAACAAAGTCTATGAAAATTGGAGACCATCTGTGGTTGGTGTGGATGGTCTGAGGCATGGGTTGAGGGTTGTTCTGAGTGAGGCTGTTGGTCATCTGAGACCGAGGGCCTGGTGTTCGCCTGCTGGTGGTTGGCTGAAGTTGAACGTTGATGTGGCTTGTCACCTTGATAAGCCAAGTGTTGGGTTGGGCGCTATTATCCGTAATGATTGGGGGGCTCTAATTGTAAGTGCAAGTGAGTGTTTGTCCTGGGTTTTTGCAGTAGAAGCGGGCGAGATCTTGACAATGTTTGAGGGGTTACGTTTGGTTGAAGCGTGTGGCTGTGCTAAT

Protein sequence

SRPICDLLEFVAGNFDETNFLRFEVACCAIWEDRNKVYENWRPSVVGVDGLRHGLRVVLSEAVGHLRPRAWCSPAGGWLKLNVDVACHLDKPSVGLGAIIRNDWGALIVSASECLSWVFAVEAGEILTMFEGLRLVEACGCAN
Homology
BLAST of CcUC01G011780 vs. NCBI nr
Match: XP_017256273.1 (PREDICTED: uncharacterized protein LOC108225829 [Daucus carota subsp. sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-07
Identity = 42/149 (28.19%), Postives = 65/149 (43.62%), Query Frame = 0

Query: 5   CDLLEFVAGNFDETNFLRFEVACCAIWEDRNK-VYENWRPSVVGVDGLRHGLRVVLSE-- 64
           C +      N      +   + C ++W  RN+ V+E    SV GV   RH     L+E  
Sbjct: 225 CQIFTRAFENGTREQCVEIAMICWSLWNRRNRWVWERINGSVFGV---RHSAINFLAEWK 284

Query: 65  ----------AVGHLRPRAWCSPAGGWLKLNVDVACHLDKPSVGLGAIIRNDWGALIVSA 124
                       G L  R WC P  GW+K+N+D A  LD  S+G+GA+IR+     +++ 
Sbjct: 285 EAQVRDEDRRLRGELGRRVWCPPKEGWVKINIDAAVFLD-GSIGVGAVIRDSQTKFVIAR 344

Query: 125 SECLSWVFAVEAGEILTMFEGLRLVEACG 141
              ++  +     E + + E L  V A G
Sbjct: 345 GRKIAGAWRPREAEAMALIEALSWVMAKG 369

BLAST of CcUC01G011780 vs. NCBI nr
Match: XP_031091124.1 (uncharacterized protein LOC115996122 [Ipomoea triloba])

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-07
Identity = 45/134 (33.58%), Postives = 61/134 (45.52%), Query Frame = 0

Query: 22  RFEVACCAIWEDRNKVYENWRPSVVGVDGLRHGLRVVLS-----EAVGHL-RPR------ 81
           +F V C AIW  RN     W+   V VD   H LR  L+         H+  PR      
Sbjct: 158 KFVVICWAIWNSRNAYV--WKGLAVDVD---HMLRSSLAFLEKWRHANHIDHPRYTGINT 217

Query: 82  ---AWCSPAGGWLKLNVDVACHLDKPSVGLGAIIRNDWGALIVSASECLSWVFAVEAGEI 141
               WC P  G LKLN DVA H +   +GLG ++R+D G  + S + C+   F V   E 
Sbjct: 218 VETHWCRPERGRLKLNTDVALHHENNLMGLGWVLRDDDGRFLASKNVCMPGRFTVTEAEA 277

BLAST of CcUC01G011780 vs. NCBI nr
Match: XP_015382596.1 (uncharacterized protein LOC107175573 [Citrus sinensis])

HSP 1 Score: 64.3 bits (155), Expect = 9.7e-07
Identity = 38/129 (29.46%), Postives = 57/129 (44.19%), Query Frame = 0

Query: 27  CCAIWEDRN-----KVYENWRPSVVGVDGLRHGLRVVL---------SEAVGHLRPRAWC 86
           C +IW  RN        E+++ SV G + +    + +           + V H   + W 
Sbjct: 8   CWSIWHSRNLFIFQNKKEDFQLSVAGAEAIVQSYKRIQMPQLQAFSDQDLVSH---KHWK 67

Query: 87  SPAGGWLKLNVDVACHLDKPSVGLGAIIRNDWGALIVSASECLSWVFAVEAGEILTMFEG 142
            P  GW K+NVD A  L+   VGLG +IRN  G  I +A +   W+  V+  E      G
Sbjct: 68  CPPAGWFKVNVDAAIKLENQRVGLGIVIRNSEGKFITAAIKPSKWLDRVDYAEAEATRFG 127

BLAST of CcUC01G011780 vs. NCBI nr
Match: XP_019158163.1 (PREDICTED: uncharacterized protein LOC109154880 [Ipomoea nil])

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-06
Identity = 39/119 (32.77%), Postives = 56/119 (47.06%), Query Frame = 0

Query: 22  RFEVACCAIWEDRNKVYENWRPSVVGVDGLRHGLRVVLSE----------AVGHLRPRAW 81
           +F +AC  IW  RN     WR +V  +D +      +LS              H     W
Sbjct: 51  KFAMACWGIWCSRNDYV--WRNAVYSMDSMLRSAMSLLSSWKDVNEPEAPVSTHTAEELW 110

Query: 82  CSPAGGWLKLNVDVACHLDKPSVGLGAIIRNDWGALI----VSASECLSWVFAVEAGEI 127
           C P+ G LKLN DVA   +   +G+G IIR++ G L+    +S  E LS V ++  G+I
Sbjct: 111 CPPSHGCLKLNTDVAMESNSGIMGMGWIIRDEMGVLVAAKAMSIHEALSLVKSLGYGDI 167

BLAST of CcUC01G011780 vs. NCBI nr
Match: XP_017251150.1 (PREDICTED: uncharacterized protein LOC108221805 [Daucus carota subsp. sativus])

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-06
Identity = 35/121 (28.93%), Postives = 54/121 (44.63%), Query Frame = 0

Query: 23  FEVACCAIWEDRNK-VYENWRPSVVGVDGLRHGLRVVLS---------EAVGHLRPRAWC 82
           + + C A+W  RNK V+E    S  GV  +   ++   S         E    +R   WC
Sbjct: 2   YGMICWALWYRRNKWVWERVTVSSFGVKSMALNMKTDWSKAREVEEHHEGQQQMRVHTWC 61

Query: 83  SPAGGWLKLNVDVACHLDKPSVGLGAIIRNDWGALIVSASECLSWVFAVEAGEILTMFEG 134
            P   W+K+N D ACH++    GLG + R++ G  + + S  +         E L+M E 
Sbjct: 62  KPPEQWIKINTDAACHVNGEMTGLGCVARDESGQFVRARSRKVQVGHQPRIAEALSMREA 121

BLAST of CcUC01G011780 vs. ExPASy TrEMBL
Match: A0A2I4GDA3 (uncharacterized protein LOC109006907 OS=Juglans regia OX=51240 GN=LOC109006907 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 39/129 (30.23%), Postives = 62/129 (48.06%), Query Frame = 0

Query: 16  DETNFLRFEVACCAIWEDRNK-VYENWRPSVVGVDGLRHGLRVVLSEAV--GHLRP-RAW 75
           D +  +RF +   A W   NK VYE  + S   V      L+  +S  +    L+P   W
Sbjct: 99  DSSQLVRFFLIAWAFWYRHNKLVYEQAKLSPESVINHAQSLQNSISSFIKTPGLKPIPCW 158

Query: 76  CSPAGGWLKLNVDVACHLDKPSVGLGAIIRNDWGALIVSASECLSWVFAVEAGEILTMFE 135
            +P  G+ KLNVD     D    G+G ++R++ G ++++ S+    V   E+ E+L MF 
Sbjct: 159 NAPPTGFFKLNVDGVIFFDYQKAGVGVVVRDENGQVVMTVSKSEHEVIEAESVELLAMFR 218

Query: 136 GLRLVEACG 141
           GL+     G
Sbjct: 219 GLQFSSQLG 227

BLAST of CcUC01G011780 vs. ExPASy TrEMBL
Match: B9RYQ2 (zf-RVT domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_1312540 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-06
Identity = 42/145 (28.97%), Postives = 64/145 (44.14%), Query Frame = 0

Query: 3   PICDLLE-FVAGNFDETNFLRFEVACCAIWEDRNK-VYENWRPSVVGVDGLRHGL---RV 62
           PIC  ++ F   N ++T   +  + C ++W  RN  V+     +  GV    + L   R 
Sbjct: 507 PICSWIQNFFIDNHEDT-CAKMALVCGSLWNQRNHWVWNKQSNTTYGVISPANQLLEQRT 566

Query: 63  VLSEAVGHLRP---------RAWCSPAGGWLKLNVDVACHLDKPSVGLGAIIRNDWGALI 122
               A   + P         R W  P  GWLK+N D A  L +  +GLG ++R+  G +I
Sbjct: 567 RAQSADEEIAPPLGHNTDVTRKWTKPELGWLKINTDTALFLKQGRIGLGCVVRDSNGRMI 626

Query: 123 VSASECLSWVFAVEAGEILTMFEGL 134
           ++ SE     F     E L+M E L
Sbjct: 627 MARSERRVGRFTAREAEALSMKEAL 650

BLAST of CcUC01G011780 vs. ExPASy TrEMBL
Match: A0A7J7G0B6 (RNase H domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_030294 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-06
Identity = 40/133 (30.08%), Postives = 60/133 (45.11%), Query Frame = 0

Query: 16  DETNFLRFEVACCAIWEDRNKV-----YENWRPSVVGVDGLRHGLRVVLSEAVG-HLRPR 75
           DE+N   F   C  IW+ RN+V     + +   +V     L      V     G  LR R
Sbjct: 81  DESNLGLFVALCWGIWQRRNQVIFCETHVSVEATVAMFCNLVSDFGQVQQRIQGPMLRDR 140

Query: 76  A--WCSPAGGWLKLNVDVACHLDKPSVGLGAIIRNDWGALIVSASECLSWVFAVEAGEIL 135
              WC+PA GW K+N D A   +  +VG+G +IRN  G ++ + SE L +    +  E  
Sbjct: 141 VVRWCAPAEGWFKINFDGAWFKELQTVGVGVVIRNSMGEVMGAMSEQLPFWVDADCAEAF 200

Query: 136 TMFEGLRLVEACG 141
              + + L +  G
Sbjct: 201 AAAKAIELAKYLG 213

BLAST of CcUC01G011780 vs. ExPASy TrEMBL
Match: A0A2P5E8B2 (RNase H domain-containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_223890 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-06
Identity = 43/144 (29.86%), Postives = 65/144 (45.14%), Query Frame = 0

Query: 1   SRPICDLLEFVAGNFDETNFLRFEVACCAIWEDRNKVYENWRPS-----VVGVDGLRHGL 60
           S+   D+L  ++      N  R  V    +W DRNKV     P      V   D   +G 
Sbjct: 143 SQHCSDILAHISKATPCGNLERICVLMWCLWFDRNKVLHGGSPKDTSLVVSFADSFINGY 202

Query: 61  RVV----LSEAVGHLRP-RAWCSPAGGWLKLNVDVACHLDKPSVGLGAIIRNDWGALIVS 120
           R V        V    P   W  P+   +K+N+D A H  +  +G+G I R+  G++I +
Sbjct: 203 RAVKLVPTKLGVNAQEPIIRWFPPSLNTIKMNLDAAIHPSRGGIGIGVIFRDHTGSVITT 262

Query: 121 ASECLSWVFAVEAGEILTMFEGLR 135
            S  L+ +F+VE  E+L + E LR
Sbjct: 263 LSMKLNGLFSVEITELLAVQEVLR 286

BLAST of CcUC01G011780 vs. ExPASy TrEMBL
Match: A0A2P5EP22 (Ribonuclease H-like domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_169220 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.0e-06
Identity = 45/136 (33.09%), Postives = 65/136 (47.79%), Query Frame = 0

Query: 17  ETNFLR-FEVACCAIWEDRNKVY--ENWRPSVVGVDGL-------RHGLRVVLSEAVGHL 76
           E  FL  F V   AIW  RN V   +N + +   +D +       + GL++V   ++   
Sbjct: 17  EVAFLEVFCVLLWAIWNRRNDVLHNQNSKEAAALLDWVQSFLFEFQDGLKIVNVYSICQG 76

Query: 77  RPRA-WCSPAGGWLKLNVDVACHLDKPSVGLGAIIRNDWGALIVSASECLSWVFAVEAGE 136
           R    WC P+ G LKLNVD A   D   +G+G  IR+  G ++   S  L   F +   E
Sbjct: 77  RNLVKWCKPSSGSLKLNVDAAVIKDSGVIGVGGAIRDLEGLVLACWSLQLVGYFDIVTSE 136

Query: 137 ILTMFEGLRLVEACGC 142
           +L + EG+RL    GC
Sbjct: 137 LLAIREGVRLAVEFGC 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_017256273.11.5e-0728.19PREDICTED: uncharacterized protein LOC108225829 [Daucus carota subsp. sativus][more]
XP_031091124.12.6e-0733.58uncharacterized protein LOC115996122 [Ipomoea triloba][more]
XP_015382596.19.7e-0729.46uncharacterized protein LOC107175573 [Citrus sinensis][more]
XP_019158163.12.2e-0632.77PREDICTED: uncharacterized protein LOC109154880 [Ipomoea nil][more]
XP_017251150.12.2e-0628.93PREDICTED: uncharacterized protein LOC108221805 [Daucus carota subsp. sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2I4GDA31.4e-0630.23uncharacterized protein LOC109006907 OS=Juglans regia OX=51240 GN=LOC109006907 P... [more]
B9RYQ21.8e-0628.97zf-RVT domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_1312540 PE=... [more]
A0A7J7G0B62.3e-0630.08RNase H domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_030294 P... [more]
A0A2P5E8B22.3e-0629.86RNase H domain-containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_2238... [more]
A0A2P5EP224.0e-0633.09Ribonuclease H-like domain containing protein OS=Trema orientale OX=63057 GN=Tor... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC01G011780.1CcUC01G011780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016788 hydrolase activity, acting on ester bonds