CcUC01G011700 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC01G011700
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DNA-directed RNA polymerase subunit alpha
Location	CicolChr01: 20096313 .. 20103706 (-)
RNA-Seq Expression	CcUC01G011700
Synteny	CcUC01G011700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCACTCTCTCCATAACCAGCTCTGTCATATAATACTATACATACCTTAAGCTCATCTATAAATTCCTGAAAAAAAAAAAAAGAATATATGATTGAATAATAAGACAGAAGCAAAGGGATTCTCATTTCAATTGATCAGTGAAGTAGAGGGCGTTGTAAAATAAATATAGAAAGAAAATATGATAAGGCTAGGATCAAATTACACGAGTCAAAGAGATATTATCACATAAAACAAAATAGATGCTAAAGCACCAATTGACCAAAAAGCTTAAGTTGATAGGTGGAGGTAAATTTAATATTATATCATTTAACACTCCCCTCACTTGTGGGCTTGAAATATGTAGAAGGCTTAACAAGTAGCAATCAATATTACTGGGGAGGAAATAACAATGCAGGAGTTTGAACATAGGACCTCTAGTATTACCTACTCTAATACCATCTTAAATCGCTTATTGATCTAAAAGTTTAAGGTGATGGGTGAAAACAAATTTAACATCATATCATTTAACAACAAATGCATTATATTTTCACTTAAATCATCACCTTCAATTAAATAGTCCAAATAAAATATCAGGCACACACTAAGATTCGAGGAAATTATCAAATTACTATTACGTTTTTTTTTTTGTTTTTTTTTTTTTGGGAAGGAAACATTATATATATAAAGGGGGAAAACCCCCGAGAATTACAAGAACTACATGAGTGATAGCCAATTGTTAACTAAAAAAGATAAGCTGAAATGAGTAAAAGGGGGCTGTGTTTTACATAAAAAAAAAAAAGCAGTAGATAAAACATTATTCATACAACGAGGAAAAGAGGAAAGTGAATCATGAAAAAGTCGCTTGTTCCGCTCACTTCATAAGCCCCATAAGAAAGCACGAATAATGGCCAATCAAATAGTCTTCTTGGTACCACAAAAGGGGTGGCCCACCAACAAAAATGCTAATATCTCCAAAATGTTATTTGGGCAAGTATAAGACCAACCAAAAGCAAGCAAGATAATGTCCTAAAATTTAGTGGCATAGGAACAGTGCATGAACAAGTGAACCGGCAATTCCGCATTTAAATGACACATATGGCACCAAGATGGAGAAGCGACATGTAGGGCAATCAACGCTGCAGATGATCAACAATGTTAATGGCACCCCAGCTAAGCTCCCAAAGAAAGATTTTTATTTTTTTAGGATATTTATCTTTCCATATAACCTTATAAAGATTTCACAGACCAATCTAATTCGCCCACCATATCAATCATCAAGGATTTGACTGTAAAAATCAAAGAAGAGTCAAGAGGCCATAACTATGAATCAGGTAAGGAGCGTGATCTGATGGGGGCCAAGTAGGCAGAAAGGGAGGCCCATTCAATAATCCAACTCAGTGAGGTTGCGTCGCAGATTTAGATTCCAAGCAGATATGGAAGGAACCCAGACATTGGCATCGTAGCCTCCAGATGTTGAGTGAGTCGAAAGAGCCGCGGATATGTGGTAGCAAGAACGCCATAACTAAGCCAAAAATCATGCCAAAAAGATGTAGATCCACCATCCTCGAGGCAATGGGAGACTTGATCCACAACCGAATCCATGTAATGGCAAATGGATCTCCAAGGAGCCTTAGATGATTCCCAAGAGATTGGAGAGGGCCAAGTACAATCCGGGGAATAATACTTCGCCACAATAAGCTTTCTCCATAAGACATCAAGTTCAATTATGAAATGCCATGTCCATTTTGCAAGAAGAGCAGAATTACGATATTTAAAGTTACCAATCCCCATGCCACCCGACAATTGTGGCCGCTGTGAAATGGCCCAGTTAACATTGTACATGCCACCATCACCTCTAGTACCTTCCCAAAAGAAATCACGTGTCAGCTTGTCAAGGCAACTAATAATAGAGGAGGGAGCCTGAAACAACGACAAGTAATATGTAGGGAGGCTAGAAAGATAGCTTGATAAGCATATGTCTCTCCCCTTTCGATATATAAGCATACTTCCAGTTGTGAAGTTTATGCTGAAATCGTTCAACCACAAGCTGCCAAAAACCTATAGATGAAGAGTCGGCCAGAAACCTCTCTTACAACCAAAAGAGTTCAACCACTCAACCACTTTAGCATCAGGGATGTGAATCCCAAGGAGCTCACTCTTGGTAAGGTTGACTTTAAGGCCAGAAGCACATTACAAAATGTGAATCACATCAAATAAGTTTTGTAAGGCAGATCTTTCAGCAATAGAGAAGAGCAATATATCGTCTGCAAACTGTAAATGATTAATCGAAAAGGATGACTGACCAATGGGGTAAGCAACAGTGAGGCCCAAAAATGAACTGTGAGCAAGCAGACGACTCAAGCAGTCTGCAACAATGACAAATAAGAAGAGAGAGAGGGGATCTCCCTATCTAATATTACGAGTAAGGATAATCTTGCCATAGGGACAACCATTTAAAATAATGGAATAGTTTGCACTAGAGAGGCAACTGTTAATCCAAGTACGCTAGAGAGAACCAAAGCCTTTAATACGCAGAACTGTATCAAGAAACTCCCAATCAACCACGTCAAAAGCCTTTTCAAAATCCAACTTAAGAACAATCCCTGATTTCTGAGAAGAGATCCAATCATCAATGAGTTCATTCGCCATCATAGAAGCATCGAGAATTTGCCCTTATATGCGCATGGAATAAAGTCGATAGGCCTGTAATTGAAAACCGTTTTAGAGTCCACTTTCTTGGGGATTAGGCAGATATAAGTTTCATTTAACTTAACATTAATAACACCAGAATTGAAGAAGTTATTAAATAATAACATCATATCAGATTTGATAGTAGACTAGAAGTACTTGAAGAATTCAGCAGTGAAGCCATCAGGGCTAGGAGATTTATTAGTTCCAAGAGAACAAACAGCTGAATAAATCTCCTCTTAAAAAAAATGCCGATCCAGATCAGCAGCTTGAGCGTGTGTAATAGGTCTCCAATCTAGATTAGTCGAAAGAAAACGTTGGTTACCATCTTTCGTAAAGAGAGCTGAGTAGAAAGATGAAAATTCCGTCTCAATGGCCTGAGCAATCAAAAGACTAATACCATCCCTAGATAATATTTATGTTATAGAGCTGTTTCAGCGGCGGGTAGCAACAATACAATGAAAAAACCTAGTATTTTCATCCCCCTCAATAAGCAATTTAAGTTTACAATGCTGCTACCAATGAATGTGTTCTTGGACCGTCAAATTTTCAATTTGTTCACGAAGCAATCAATGTCTATTAATCTGATCATCATTCAAGCAAACTCTATCTTCTAAGTTATCTAGTTGTGATAATTGTGTCACAAGATCCGAAAGAGTAGCAACCTCTCTACGATAAGAGTTATTCCATTCCAGAATAGCCAATTTCAAACCATGCAATTTCATCATTAAACCATGTCTTGGCCAATCTATAATGGGGTGTTGATTCCACCAAACCTCAACCATAGAACGAAAAGAATGGATTTGCAGCCATGAATTTTCAAATTTGAAAGGGCAAGGGCCTCAAACAATGCTTCCCGAAGATAAAGCCAAAGGAAAGTGATGCAATGTTGTTCTCTCCAACCTTTTAAGGGTAACAGCTCCGAACTTCTGTAGACAATTTTCCTTGAGAACAAATCTATCAAGGAGGGACAAGTATTGAATAGAGCCAAAACTAGACCATGTAAAGCAGCCATTAGACAAAGGAATATCTCGGAGCTAATAGTTAGTTATCCAATGATTAAAAGCACGCATACTGGATGAAATCGTTGGATCATGTGATTTCTCCCATGTCCACTGAGTGACATTAAAGTTGCTACTAATAACCCAATTATCACCACCCAAACCAGCCAAGTCATCAAGCTCTTGCCAAAAATCAGCATGGTAGGCATTATCGAACAGCCATAAACCAAAAAGAGAAACCATCAGCCAACGATACTTGAATAGAGACAGAAAAATTACCTTGAACAACGTCATTGATGGAGATGTCTGGTTCACTCCAAAGAATGAGAATACCCCTCAAAGAATCAATAGCATCCAAGGATGTCCAACCAATGTAGGCAGAACTCCATATTAATTTAATCAAGACGGAATCCACAGAAGACAGCTTTGTTTCTTGTAAGAGCACTATACCCGGGTTATGTTGTTAAATGAGCTTTTTAACCATAGTGCGTTTTCTCCAAAAGTTGAGTCCACGAATGTTCCATGAAAGAAATTTCATTGAGCTACAGAAGTTCCCTCCCTAATGGCCAATGTTGCTGTCTTATCATAGTATATTGAGGAATACAGGCCTTACAACTCTCTTTGTAGCTTAGATTTTTTGCTTTTAGCCTGCGCTGGACCTTTGGATTTAGATTGTTGAGGAATGGAGGGGATGGCACATAAGCCATGGGTAGACAGTAGGGAGGCAAGGTCATGGAGGCTGAATGGTAAGTTTGATGAGGCTGGGGCCGATTGTTCATAATTCGAAAAAGAGGGGCCGTAAGGAGCTGTCATATTTTGTGGAGTGGGCCCCAAAATATGATCTTGAGTTGGACTGATGTCCGATGGGAGAGAGGGAAAAGTGTATAGTGGTAAGTTATGAGTTTCATCCAGTTCGTCACCATAAATGGCCATGTCAAGAGGGCAGGGGGTAAATTCTTCAACATCGACCAGATTGGTAGTGCCACATCATTTGCAGGACTGGAAAGGTAGGCTTTCGTGTCAGATCCAGCAAAGGGAAGATTCTGTTTTCCTACTGATGTGGAGAAAGATTGACCAACTTGGAGATTAATGAGACCCTCATGAAAGTTGACAGTGGAGAGAGAAGGTTTTGTAAAGGAAGGAGATGCTGAATTTTCAGGGCTGAGATTCTTATTATGGAAAATAAAGGAAGGGGTATTTCGGCTAGGGTTGACCGATAGAGTGGAAGAAGGTTGTATTTCGGGAGGGGGGTCCGCCGATGAATTTGGCTGAGGAGAGATGATAAAATTCCAATAAGATTTCATTCTTGAACAAAAATCCCCGGTTCGAAATGTGAATCACAGTATTCATTCTTATGTAAATGGGAATGAAAAACAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCACGAAGCCTCTCGGAATTTGATTGATTTATTTGTTCCTTTTTTACATGCGGAAGAAGAAAAAGAAAACTTCCATTTAAAAAACAATAAACAGAAAGTTACTTTACCCTTTTTTGCTTTTCACGAGAAATTGGCTAAACTAGGAAAAAAGAAAAAAGAAATAGCATTAAAATATATTTTTATTGACCAATCAGAATTGCCTCCTAGGATCTATAATTGTTTCTTCCCAACTACTCTTCACTCAAGTTCTCAATTAAGACCAAACAAGATTTCATTGATTCTTTTTCTTTTTTATTTCGACTTTCAGAGTTCTTTATTCAATATATCAATTATAACATAAAAAATAAATAAATGTGAAATTTTTGAGTAGTCTATTTCCCTTGGATCAACCAAATCTAGACATACCTTTATGAGATCGTTAAATAGATCTTCAGGGACAGAGGACAGCCTCTTTTCCTTAATTGGAGGAGAGAGGGGAGTGGGTGATTCAATTATTTGAGGAGAAAGAGGGATATTATTTTCCATAATTTGTGGAGATTTGGTCAAAGGCTTGGTTGATGGTCAGGACAGAGAGAAACTTAATCAAAAGGATGCTCCAAATATGGGGAGAGGGGGATTTCGGCTTGGATTGTATCTTCGACAATAAATTTACCCTTGTTAACCCTCCGAAATTGATTGTGATCCACAATTTCAACCGAACCATTAATGCTAGCTCCGTGCGTCGGTTTCAAATCATCTTGCCGGCCCGAAGATATTAGATTGGGGGCGGTGATGGAAACGGTGATGTCAGGTCTGGCAACTTCAATAGGAAGGCGAACTTCACAAGGAATGAGGCCACACTAATTTTCTTTGATTTTGATGTAAGCAAATGAGAGGTTTAGACCTCTTTCTGTCTGATTAGAGGGATGAAGGTAGCCTCCACAAAAATCTCCAATAAATTGGAATATGGCTTCAGTCCAGAGGGTGACCGGAAGGTGGTAAAGATCAATCCAGCCCCCATATGAAGCAGTCATTTATCATTTGAAGGAAGATGGTTCAGATGTAGATAGAAATTTAAGCTTTCTTTGATCAATTGTAGTCCAATTGGATGATGCACACAGTTGCTTCGAAATATCATAATTGTAAACATGGAGAAGAGCTTTATCATCCGATAGAGGATTGATGCATCTAGGTGCGATGGTTGCTTGAACAGTTGCATGTATCTTCAGCCAAGTGTCTTTTGTCGTGAACAATCACCATAGCCAACGAATCACTGTGGGGGATTGGAATAGCACAATGCTGCCGAGGAGGGGCAGTTTGCTGTTGCTGAATTTGTGGAGGACTTTTTACTTTTACTGCTTCACTGTATGAAATAGTCTTATTGGATTGCAAGTTCTTGTTGGAATAGTCGGATATCAGTGAGAAGAAGGAGAACCAACCCCTTTTGTCCTCCATAGCTAGGATGAGGATGTTTGATCGGAGACCAAATTGTTCTTCCGCAAAATAACCATGCTTGTTTCTATACTTATCAAGCCAAAGTATCTCCTTCATCATTCAATTTTCTAAAGAACTTTTGATTACAAGGTTCTTTGTGAAGAGATTTGAAAGAAGATGCAAGCCAATCAAGAGACTTTCAGGTGATAAAGATAGAGCAGATGTTGGATTTTGTTTGTTTAGAAAGTTTAAAGTGTTTCCCCCCATTTGGAGTAATCGGGAAAAGGGAGAATAGTTTCCGATCTATGTGAATAGATTGAATGGTGGAGGTAGGGATGGGTTGTGATGGAGACATGGAGTGCAATTTAGTTAGGGGAAGAACCGAGGGAAGGTGGGAGAGGAGGAGGAGGAGAGAGCGTCATAGGGAGTTAATGGCATTAGGTTTATGGTAAAGACATTCTCAAATAAAGTACAATTACCAAAGTCTATAGTTTATTCATTCATGTGACTCATCACCAATGTTAGGAACTTAGAAACAAATCTTTCAACCTTAACCATCCCAGGGACAACAATTTTAAGAAATTCTAGAATTTAAATGCATTTATAACTGCAAAAAATCCTAAACACTGCTCAGATGAAGACATTTACGACTAAGCAAAGAATAAGGAGCTCATACTTGAGAGGCAGGTAAGTACATATCTTTGGAGCTATTGTAGCCATGACACATAATGATTTTGTATTGAGCCTCTTCCTTAGGAACTCCAAATTCTTTGTAGGCCAAATGCCTCCCATCATTGAGCTTTACTCTAGGTGAAGTCACCGGAGGGCCATTTTCTGTTCCACATATCTTTGGAGGTGAAGGTTTCAATGCTTGA

mRNA sequence

ATGGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCACGAAGCCTCTCGGAATTTGATTGATTTATTTGTTCCTTTTTTACATGCGGAAGAAGAAAAAGAAAACTTCCATTTAAAAAACAATAAACAGAAAGCCAAATGCCTCCCATCATTGAGCTTTACTCTAGGTGAAGTCACCGGAGGGCCATTTTCTGTTCCACATATCTTTGGAGGTGAAGGTTTCAATGCTTGA

Coding sequence (CDS)

ATGGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCACGAAGCCTCTCGGAATTTGATTGATTTATTTGTTCCTTTTTTACATGCGGAAGAAGAAAAAGAAAACTTCCATTTAAAAAACAATAAACAGAAAGCCAAATGCCTCCCATCATTGAGCTTTACTCTAGGTGAAGTCACCGGAGGGCCATTTTCTGTTCCACATATCTTTGGAGGTGAAGGTTTCAATGCTTGA

Protein sequence

MEILFLEIWTNGSLTPKEALHEASRNLIDLFVPFLHAEEEKENFHLKNNKQKAKCLPSLSFTLGEVTGGPFSVPHIFGGEGFNA

Homology

[Close]

BLAST of CcUC01G011700 vs. NCBI nr
Match: YP_009326021.1 (RNA polymerase alpha subunit [Citrullus lanatus] >YP_009348063.1 RNA polymerase alpha subunit [Citrullus mucosospermus] >YP_009420826.1 RNA polymerase alpha subunit [Citrullus colocynthis] >YP_009431588.1 RNA polymerase alpha subunit [Citrullus amarus] >APW82494.1 RNA polymerase alpha subunit [Citrullus lanatus subsp. vulgaris] >QZL38713.1 RNA polymerase alpha subunit [Citrullus ecirrhosus] >APD52512.1 RNA polymerase alpha subunit [Citrullus lanatus] >APW82579.1 RNA polymerase alpha subunit [Citrullus lanatus subsp. vulgaris] >APW82664.1 RNA polymerase alpha subunit [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 110.2 bits (274), Expect = 9.0e-21
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 2   EILFLEIWTNGSLTPKEALHEASRNLIDLFVPFLHAEEEKENFHLKNNKQKAKCLPSLSF 61
           EILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEEEKENFHLKNNKQK   LP  +F
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKV-TLPLFTF 255

[Close]

BLAST of CcUC01G011700 vs. NCBI nr
Match: AHM90997.1 (RNA polymerase alpha subunit [Lagenaria siceraria])

HSP 1 Score: 110.2 bits (274), Expect = 9.0e-21
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 2   EILFLEIWTNGSLTPKEALHEASRNLIDLFVPFLHAEEEKENFHLKNNKQKAKCLPSLSF 61
           EILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEEEKENFHLKNNKQK   LP  +F
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKV-TLPLFTF 255

[Close]

BLAST of CcUC01G011700 vs. NCBI nr
Match: YP_009456178.1 (RNA polymerase alpha subunit [Lagenaria siceraria] >QNM38563.1 RNA polymerase alpha subunit [Lagenaria siceraria var. microcarpa] >AHM88699.1 RNA polymerase alpha subunit [Lagenaria siceraria] >AHM89344.1 RNA polymerase alpha subunit [Lagenaria siceraria] >AHM89521.1 RNA polymerase alpha subunit [Lagenaria siceraria] >AHM89581.1 RNA polymerase alpha subunit [Lagenaria siceraria])

HSP 1 Score: 110.2 bits (274), Expect = 9.0e-21
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 2   EILFLEIWTNGSLTPKEALHEASRNLIDLFVPFLHAEEEKENFHLKNNKQKAKCLPSLSF 61
           EILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEEEKENFHLKNNKQK   LP  +F
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKV-TLPLFTF 255

[Close]

BLAST of CcUC01G011700 vs. NCBI nr
Match: AHM89107.1 (RNA polymerase alpha subunit [Lagenaria siceraria])

HSP 1 Score: 110.2 bits (274), Expect = 9.0e-21
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 2   EILFLEIWTNGSLTPKEALHEASRNLIDLFVPFLHAEEEKENFHLKNNKQKAKCLPSLSF 61
           EILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEEEKENFHLKNNKQK   LP  +F
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKV-TLPLFTF 255

[Close]

BLAST of CcUC01G011700 vs. NCBI nr
Match: AHM89640.1 (RNA polymerase alpha subunit [Lagenaria siceraria] >AHM90112.1 RNA polymerase alpha subunit [Lagenaria siceraria])

HSP 1 Score: 110.2 bits (274), Expect = 9.0e-21
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 2   EILFLEIWTNGSLTPKEALHEASRNLIDLFVPFLHAEEEKENFHLKNNKQKAKCLPSLSF 61
           EILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEEEKENFHLKNNKQK   LP  +F
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKV-TLPLFTF 255

[Close]

BLAST of CcUC01G011700 vs. ExPASy Swiss-Prot
Match: Q4VZK3 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-23
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 2   EILFLEIWTNGSLTPKEALHEASRNLIDLFVPFLHAEEEKENFHLKNNKQKAKCLPSLSF 61
           EILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEEEKENFHLKNNK+K   LP  +F
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKKKV-TLPLFTF 255

[Close]

BLAST of CcUC01G011700 vs. ExPASy Swiss-Prot
Match: Q49KW6 (DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoA PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 8.8e-19
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 2   EILFLEIWTNGSLTPKEALHEASRNLIDLFVPFLHAEEEKENFHLKNNKQKAKCLPSLSF 61
           EILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEE  EN HL+NN+ K   LP  +F
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE--ENLHLENNQYKV-TLPFFTF 253

[Close]

BLAST of CcUC01G011700 vs. ExPASy Swiss-Prot
Match: A4GYU3 (DNA-directed RNA polymerase subunit alpha OS=Populus trichocarpa OX=3694 GN=rpoA PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 8.8e-19
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 2   EILFLEIWTNGSLTPKEALHEASRNLIDLFVPFLHAEEEKENFHLKNNKQKAKCLPSLSF 61
           EILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEE  ENFHL+ N+ K   LP  +F
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE--ENFHLEKNQHKI-TLPLFAF 253

[Close]

BLAST of CcUC01G011700 vs. ExPASy Swiss-Prot
Match: Q14FC5 (DNA-directed RNA polymerase subunit alpha OS=Populus alba OX=43335 GN=rpoA PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.3e-18
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 2   EILFLEIWTNGSLTPKEALHEASRNLIDLFVPFLHAEEEKENFHLKNNKQKAKCLPSLSF 61
           EILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEE  E+FHL+ N+ K   LP  +F
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE--ESFHLEKNQHKI-TLPLFAF 253

[Close]

BLAST of CcUC01G011700 vs. ExPASy Swiss-Prot
Match: Q0ZIY7 (DNA-directed RNA polymerase subunit alpha OS=Vitis vinifera OX=29760 GN=rpoA PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.7e-18
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 2   EILFLEIWTNGSLTPKEALHEASRNLIDLFVPFLHAEEEKENFHLKNNKQKAKCLPSLSF 61
           EILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEE  E  HL+ N+ K+  LP L+F
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE--ETLHLEYNQHKS-TLPPLTF 253

[Close]

BLAST of CcUC01G011700 vs. ExPASy TrEMBL
Match: A0A1P8LEA2 (DNA-directed RNA polymerase subunit alpha OS=Citrullus mucosospermus OX=519315 GN=rpoA PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.4e-21
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 2   EILFLEIWTNGSLTPKEALHEASRNLIDLFVPFLHAEEEKENFHLKNNKQKAKCLPSLSF 61
           EILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEEEKENFHLKNNKQK   LP  +F
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKV-TLPLFTF 255

[Close]

BLAST of CcUC01G011700 vs. ExPASy TrEMBL
Match: X2F3V9 (DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria OX=3668 GN=rpoA PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.4e-21
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 2   EILFLEIWTNGSLTPKEALHEASRNLIDLFVPFLHAEEEKENFHLKNNKQKAKCLPSLSF 61
           EILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEEEKENFHLKNNKQK   LP  +F
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKV-TLPLFTF 255

[Close]

BLAST of CcUC01G011700 vs. ExPASy TrEMBL
Match: X2F0H0 (DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria OX=3668 GN=rpoA PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.4e-21
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 2   EILFLEIWTNGSLTPKEALHEASRNLIDLFVPFLHAEEEKENFHLKNNKQKAKCLPSLSF 61
           EILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEEEKENFHLKNNKQK   LP  +F
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKV-TLPLFTF 255

[Close]

BLAST of CcUC01G011700 vs. ExPASy TrEMBL
Match: X2F0I6 (DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria OX=3668 GN=rpoA PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.4e-21
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 2   EILFLEIWTNGSLTPKEALHEASRNLIDLFVPFLHAEEEKENFHLKNNKQKAKCLPSLSF 61
           EILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEEEKENFHLKNNKQK   LP  +F
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKV-TLPLFTF 255

[Close]

BLAST of CcUC01G011700 vs. ExPASy TrEMBL
Match: A0A1P8LDB9 (DNA-directed RNA polymerase subunit alpha OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rpoA PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.4e-21
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 2   EILFLEIWTNGSLTPKEALHEASRNLIDLFVPFLHAEEEKENFHLKNNKQKAKCLPSLSF 61
           EILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEEEKENFHLKNNKQK   LP  +F
Sbjct: 197 EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKV-TLPLFTF 255

[Close]

BLAST of CcUC01G011700 vs. TAIR 10
Match: ATCG00740.1 (RNA polymerase subunit alpha )

HSP 1 Score: 85.1 bits (209), Expect = 2.9e-17
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 2   EILFLEIWTNGSLTPKEALHEASRNLIDLFVPFLHAEEEKENFHLKNNKQKAKCLPSLSF 61
           EILFLEIWTNGSLTPKEALH+ASRNLI+LF+PFLH EE  E F+L+NN+ +   LP   F
Sbjct: 197 EILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE--ETFYLENNQHQV-TLPFFPF 253

The following BLAST results are available for this feature:

BLAST of CcUC01G011700 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009326021.1	9.0e-21	88.33	RNA polymerase alpha subunit [Citrullus lanatus] >YP_009348063.1 RNA polymerase ...	[more]
AHM90997.1	9.0e-21	88.33	RNA polymerase alpha subunit [Lagenaria siceraria]	[more]
YP_009456178.1	9.0e-21	88.33	RNA polymerase alpha subunit [Lagenaria siceraria] >QNM38563.1 RNA polymerase al...	[more]
AHM89107.1	9.0e-21	88.33	RNA polymerase alpha subunit [Lagenaria siceraria]	[more]
AHM89640.1	9.0e-21	88.33	RNA polymerase alpha subunit [Lagenaria siceraria] >AHM90112.1 RNA polymerase al...	[more]

BLAST of CcUC01G011700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK3	3.5e-23	86.67	DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=...	[more]
Q49KW6	8.8e-19	78.33	DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus...	[more]
A4GYU3	8.8e-19	78.33	DNA-directed RNA polymerase subunit alpha OS=Populus trichocarpa OX=3694 GN=rpoA...	[more]
Q14FC5	3.3e-18	76.67	DNA-directed RNA polymerase subunit alpha OS=Populus alba OX=43335 GN=rpoA PE=3 ...	[more]
Q0ZIY7	5.7e-18	76.67	DNA-directed RNA polymerase subunit alpha OS=Vitis vinifera OX=29760 GN=rpoA PE=...	[more]

BLAST of CcUC01G011700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1P8LEA2	4.4e-21	88.33	DNA-directed RNA polymerase subunit alpha OS=Citrullus mucosospermus OX=519315 G...	[more]
X2F3V9	4.4e-21	88.33	DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria OX=3668 GN=rpoA...	[more]
X2F0H0	4.4e-21	88.33	DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria OX=3668 GN=rpoA...	[more]
X2F0I6	4.4e-21	88.33	DNA-directed RNA polymerase subunit alpha OS=Lagenaria siceraria OX=3668 GN=rpoA...	[more]
A0A1P8LDB9	4.4e-21	88.33	DNA-directed RNA polymerase subunit alpha OS=Citrullus lanatus subsp. vulgaris O...	[more]

BLAST of CcUC01G011700 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00740.1	2.9e-17	70.00	RNA polymerase subunit alpha	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 3..30 e-value: 5.1E-5 score: 23.0
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 1..56 e-value: 3.4E-13 score: 51.2
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 2..36
IPR011773	DNA-directed RNA polymerase, alpha subunit	PANTHER	PTHR32108	DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA	coord: 2..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC01G011700.1	CcUC01G011700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity