CcUC01G011360 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC01G011360
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr01: 18262366 .. 18263323 (+)
RNA-Seq ExpressionCcUC01G011360
SyntenyCcUC01G011360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTAAATAAAATTGAAGGTGATTGATGAAGTTCAAGAGCAACGAACATACTTCACCGCCTGCTCGGGAAAATGCTTCCCTGGCTGCCTCTGCCTTAGAGTGTGCAAGTCTCCCCCAGGGCAGAACTCCATCACCAAGCATGAGAACTTATCAGTCTCAAAATGAGTATATAATGTAGGAAGGAATGGATGATCAAGAGACTGCAATATTTCTCTTTCGGTCTGAGCTCGAAGCAACTTCTTTCGGCTTGCTAGAGACCCTTTGTCCATGACCTTCATAGCAAAATAACATTTAGTACCACTCAACTCCGACAAGTAGACGCTTCCGATATCCCCACATCCCAGTCTCTTCAATAGTCTAAAATGACCTAATCCCAATATCCCGTCCCTTGCACGTACAGCTTGGATGGCCTCCCATCTCAAGTCATTAGCTTTGTGAGGCTTACTGATACTACTACTAAAGCTGCTACAGGTGCTTTCGTCACTGATGTCGCTGCTAGTGCTTCCTCGACACATGCTGCTCTTGCCACTCTCAACCATCTCAACACGGTCGCTAATTTTTGCACTTCCACTAGTCTTGGCAATACTGTTTGTTCCATCACTGACTTTGGCAGAAACAGAACTATCCTTCCCACTCCCACATTCCGATGTTTTCTTCTCAGGATCTATAGAGTCCTCTGCTAAGCCCCGGGTCCCGCTAAGAGCAGGATCTCCTTCTGTCAACATCTTAGAGCCAGACTTTGAGGAATTTTCTTTGACTTTCTGATTACAAGACTCGGTAGACTCTTTAGGATTTAAACTTGAGGATTTGCTCTTTGATGAATCAATCAAAGTAGACTGATTCAAGGATTTCTGTGTAGAGTTCAATACATCTCCAGAGATAACAGAACCAATTTTGGTTCCCAATGAAGTCTGTGAAGGTAAGGACTTTAGATCACCTGAATCCGTAGCTTGA

mRNA sequence

ATGCAATTCAAGAGCAACGAACATACTTCACCGCCTGCTCGGGAAAATGCTTCCCTGGCTGCCTCTGCCTTAGAGTGTGCAAGTCTCCCCCAGGGCAGAACTCCATCACCAAGCATGAGAACTTATCAGTCTCAAAATGAGTATATAATCTTGGATGGCCTCCCATCTCAAGTCATTAGCTTTGTGAGGCTTACTGATACTACTACTAAAGCTGCTACAGGTGCTTTCGTCACTGATGTCGCTGCTAGTGCTTCCTCGACACATGCTGCTCTTGCCACTCTCAACCATCTCAACACGGTCGCTAATTTTTGCACTTCCACTAGTCTTGGCAATACTGATTTCTGTGTAGAGTTCAATACATCTCCAGAGATAACAGAACCAATTTTGGTTCCCAATGAAGTCTGTGAAGGTAAGGACTTTAGATCACCTGAATCCGTAGCTTGA

Coding sequence (CDS)

ATGCAATTCAAGAGCAACGAACATACTTCACCGCCTGCTCGGGAAAATGCTTCCCTGGCTGCCTCTGCCTTAGAGTGTGCAAGTCTCCCCCAGGGCAGAACTCCATCACCAAGCATGAGAACTTATCAGTCTCAAAATGAGTATATAATCTTGGATGGCCTCCCATCTCAAGTCATTAGCTTTGTGAGGCTTACTGATACTACTACTAAAGCTGCTACAGGTGCTTTCGTCACTGATGTCGCTGCTAGTGCTTCCTCGACACATGCTGCTCTTGCCACTCTCAACCATCTCAACACGGTCGCTAATTTTTGCACTTCCACTAGTCTTGGCAATACTGATTTCTGTGTAGAGTTCAATACATCTCCAGAGATAACAGAACCAATTTTGGTTCCCAATGAAGTCTGTGAAGGTAAGGACTTTAGATCACCTGAATCCGTAGCTTGA

Protein sequence

MQFKSNEHTSPPARENASLAASALECASLPQGRTPSPSMRTYQSQNEYIILDGLPSQVISFVRLTDTTTKAATGAFVTDVAASASSTHAALATLNHLNTVANFCTSTSLGNTDFCVEFNTSPEITEPILVPNEVCEGKDFRSPESVA
Homology
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BLAST of CcUC01G011360 vs. ExPASy TrEMBL
Match: A0A2P2LVI2 (Uncharacterized protein MANES_09G084000 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.3e-08
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 51  LDGLPSQVISFVRLTDTTTKAATGAFVTDVAASASSTHAALATLNHLNTVANFCTSTSL 110
           LD LPSQVI FVR  +TTTKAAT A +T + A AS THAALATLN +N++ N  TSTSL
Sbjct: 14  LDSLPSQVICFVRFANTTTKAATCALITHITACASPTHAALATLNIINSITNLGTSTSL 72

The following BLAST results are available for this feature:
BLAST of CcUC01G011360 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC01G011360 vs.
Match NameE-valueIdentityDescription
BLAST of CcUC01G011360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P2LVI23.3e-0866.10Uncharacterized protein MANES_09G084000 OS=Rhizophora mucronata OX=61149 PE=4 SV... [more]
BLAST of CcUC01G011360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC01G011360.1CcUC01G011360.1mRNA