CcUC01G008860 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC01G008860
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr01: 9656644 .. 9658465 (+)
RNA-Seq ExpressionCcUC01G008860
SyntenyCcUC01G008860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGTAAGGGAGGTATAGCCAGTGAAAATGGTGTTTAAATTTAAAGCCTTATGGACAAATTAGCTCTCACCGTCTTGAGCTTCATCACAACAACAATGGCTTCTATGAAGATCACTTGGATGGTCTTCAAACTGCTTTTCTTCACAGTGCTTCTCATCGTCTCTGCAGCTTCTCCAACAGAAGATAACATTATTCCTTCCTTTCACAAACCTCACTTTCGTAAGATTTCTTTCCCATTCTTTTTTAATGTTTTTCCTTTGTTGGTTCCCGCATAGATCCTTGTCAATTTTAGAAACATATTTACATGTTATATTTTCTTAACCAATTTCGATAAAGATTAACTTTAAGAGATTATTACATATGAAGTTTATTTTTAAATATAAGAAAATGAATCAAAATATTTACAAATATAGCAAAATTTTACTGTCTATCTGCGATACACTACTATTTGTATCTATTTGTATCATGATAGACACAGATACTATTTTATCATGATTTATCACGCTTGTAAATATTTTAACAATTTTATCATTTAAAATAATTTACTTTTATTGGAAGTAAAAATAAATAAATAAATTTAAGCATTTGAAAGTAAAAAAAAATGAATACCTTTAGTAGTTCCTTCCAAACCCTCGGTCTTCTGCCTACCCTTGCCACTTCCCTATGCATCCCGACTAAGGTCTCACAAACGTGCACTTCCCTTGTGCATCCAGCCGAAAAGAATCAATAGAAAAAGAAAGAATCGGATTGAATGAAACAGCTCAAAGTATATGGATTAATGGACTAAAACAATATTTTAACTAACCCATATTTTTATGAGATGAGACAATTTAATTAGTTCAAAGAGAAGTGATTGTGAACTTATATATTGGAAGGATGATTTTACACTTTAGTAGAATAATGGTGGAAATGGAGAATCAAACCTCCCATCCAAAAAGAAAGATTGTATACCAATATATTACCGTTGAACTAAACTCATCTTGACCTATGATCCTTATTTAATCTAAGAATATAACTATGTTTATTGTAGTTTGGTGGACTCAAAAAGAAAAAAAAAATTGTGCTTTGATATTTTATAGGTCTTTGCTTTGCTTATTTTGTTTGATAAGTCTTCATATTTTTAAGGGAAAATTACCTTTTAAGTCAAATTTTTGAGAATATATTTCAAATGTTCTTGAAGTAATTTCTTTTATTTTGTATGACATTTAAAATTAAAAAATAATGTCAAAGAAATTATCCCTTCTCTCTTTTTGTTCCTCCCTCCTACTCTTCGTCTCCTCTTCTTCACTTGTTTAGGTGAGGTTTAGGCAAATTGGCCCAAATGCCTACGAATAACTTTTTATCAACATCCAGACTTTAATCATGGGTGCAATTCAAGAAATATAAAACTTGAAATATTGACATTGAGGTTAAAGGTTCGATTTTTTCATCCTAGGTAATAATAATAATAATAAATAAATAAAAAAGAGAAAGTTCAATGAAAGTTAATTTGGGATACGAATAATTAATTTTGAATTATGGTATATGTTTTGAAAGGTAGGATGAGGATGGAGCATAGAACTGTTGGGAAGGCTGCATTGAGAGGAAAGCCAGCAGTTTATGATTTCCCTTGGAAAGGTGGTTACAATCCTCCAGACAACAACCATTGATTTCCTATATTATTTGACTCTCTTAGGATCCATGTATTATCAAACCTTAAACCCTACAAAATAATTAATTGATGATCTACCTTTTTGTTGCTTTGTTTCTTTAATGTTCACTTTGTCTTAATGGGATAAAGCTTTTCCTTTTTCTTTCATGTTGATTGGGTCTGCTAAATTACG

mRNA sequence

AAGTAAGGGAGGTATAGCCAGTGAAAATGGTGTTTAAATTTAAAGCCTTATGGACAAATTAGCTCTCACCGTCTTGAGCTTCATCACAACAACAATGGCTTCTATGAAGATCACTTGGATGGTCTTCAAACTGCTTTTCTTCACAGTGCTTCTCATCGTCTCTGCAGCTTCTCCAACAGAAGATAACATTATTCCTTCCTTTCACAAACCTCACTTTCGTAGGATGAGGATGGAGCATAGAACTGTTGGGAAGGCTGCATTGAGAGGAAAGCCAGCAGTTTATGATTTCCCTTGGAAAGGTGGTTACAATCCTCCAGACAACAACCATTGATTTCCTATATTATTTGACTCTCTTAGGATCCATGTATTATCAAACCTTAAACCCTACAAAATAATTAATTGATGATCTACCTTTTTGTTGCTTTGTTTCTTTAATGTTCACTTTGTCTTAATGGGATAAAGCTTTTCCTTTTTCTTTCATGTTGATTGGGTCTGCTAAATTACG

Coding sequence (CDS)

ATGGACAAATTAGCTCTCACCGTCTTGAGCTTCATCACAACAACAATGGCTTCTATGAAGATCACTTGGATGGTCTTCAAACTGCTTTTCTTCACAGTGCTTCTCATCGTCTCTGCAGCTTCTCCAACAGAAGATAACATTATTCCTTCCTTTCACAAACCTCACTTTCGTAGGATGAGGATGGAGCATAGAACTGTTGGGAAGGCTGCATTGAGAGGAAAGCCAGCAGTTTATGATTTCCCTTGGAAAGGTGGTTACAATCCTCCAGACAACAACCATTGA

Protein sequence

MDKLALTVLSFITTTMASMKITWMVFKLLFFTVLLIVSAASPTEDNIIPSFHKPHFRRMRMEHRTVGKAALRGKPAVYDFPWKGGYNPPDNNH
Homology
BLAST of CcUC01G008860 vs. NCBI nr
Match: TYK18975.1 (hypothetical protein E5676_scaffold418G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 0

Query: 16 MASMKITWMVFKLLFFTVLLIVSAASPTEDNIIPSFHKPHFR-RMRMEHRTVGKAALRGK 75
          MAS+ I W++FKLLFFT+LLI ++ +       P  H+P FR +MRME+R+V K AL  K
Sbjct: 1  MASINIIWIIFKLLFFTLLLITTSTA-----FQPQLHEPRFRKKMRMEYRSVRKGALGAK 60

Query: 76 PAVYDFPWKGGYNPPDNN 93
          PAVYDFPWKGGYNPPDNN
Sbjct: 61 PAVYDFPWKGGYNPPDNN 73

BLAST of CcUC01G008860 vs. NCBI nr
Match: KGN53822.1 (hypothetical protein Csa_015192 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 3.7e-15
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 0

Query: 16 MASM-KITWMVFKLLFFTVLLIVSAASPTEDNIIPSFHKPHFR-RMRMEHRTVGKAALRG 75
          MAS+  I  ++FKLLFFT+LLI ++++       P  H+PHFR +MRME+R+V KAAL G
Sbjct: 1  MASINNIILIIFKLLFFTLLLITTSSA-----FQPQLHEPHFRKKMRMEYRSVRKAALGG 60

Query: 76 KPAVYDFPWKGGYNPPDNN 93
          KPAVYDFPWKGGYNPP NN
Sbjct: 61 KPAVYDFPWKGGYNPPHNN 74

BLAST of CcUC01G008860 vs. NCBI nr
Match: XP_022141390.1 (uncharacterized protein LOC111011803 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 14  TTMASMKITWMVFKLLFFTVLLIVSAASPTEDNIIPSFHK-PHFRRMRMEHRTVGKAALR 73
           TTMAS++I++ V KL FF +LLI S  S +     PS HK P  R++ ME+R+VGKA LR
Sbjct: 40  TTMASLRISF-VLKLFFFALLLIASRVSAS----TPSIHKRPRIRKLGMEYRSVGKAVLR 99

Query: 74  GKPAVYDFPWKGGYNPPDNN 93
            K A YDFPWKGGYNPP+NN
Sbjct: 100 AKAASYDFPWKGGYNPPNNN 114

BLAST of CcUC01G008860 vs. NCBI nr
Match: KAG6602002.1 (hypothetical protein SDJN03_07235, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 4.2e-11
Identity = 43/77 (55.84%), Postives = 51/77 (66.23%), Query Frame = 0

Query: 16 MASMKITWMVFKLLFFTVLLIVSAASPTEDNIIPSFHKPHFRRMRMEHRTVGKAALRGKP 75
          M S KI+     L FF  LL+V+      D I  SF KPH R++ ME+ TV KAALR KP
Sbjct: 1  MGSHKIS---MALPFFLALLLVAFTVSAAD-ISASFQKPHIRKLSMEYTTVEKAALRAKP 60

Query: 76 AVYDFPWKGGYNPPDNN 93
          AVYDFPWKGGY+PP N+
Sbjct: 61 AVYDFPWKGGYHPPAND 73

BLAST of CcUC01G008860 vs. NCBI nr
Match: KAE8650426.1 (hypothetical protein Csa_009889 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 2.9e-04
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 0

Query: 24 MVFKLLFFTVLLIVSAASPTEDNIIPSFHKPHFRRMRMEHRT-VGKAALRG---KPAVYD 83
          ++ KLLFF++LLI S  S T + + P FHKP  R++ ++ +T  GKA +     KP   D
Sbjct: 13 LLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPRVIKPTSED 72

Query: 84 FPWKGGYNPP 90
          FPW GGY  P
Sbjct: 73 FPWGGGYIHP 82

BLAST of CcUC01G008860 vs. ExPASy TrEMBL
Match: A0A5D3D619 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00680 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.5e-17
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 0

Query: 16 MASMKITWMVFKLLFFTVLLIVSAASPTEDNIIPSFHKPHFR-RMRMEHRTVGKAALRGK 75
          MAS+ I W++FKLLFFT+LLI ++ +       P  H+P FR +MRME+R+V K AL  K
Sbjct: 1  MASINIIWIIFKLLFFTLLLITTSTA-----FQPQLHEPRFRKKMRMEYRSVRKGALGAK 60

Query: 76 PAVYDFPWKGGYNPPDNN 93
          PAVYDFPWKGGYNPPDNN
Sbjct: 61 PAVYDFPWKGGYNPPDNN 73

BLAST of CcUC01G008860 vs. ExPASy TrEMBL
Match: A0A0A0KZM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152270 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-15
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 0

Query: 16 MASM-KITWMVFKLLFFTVLLIVSAASPTEDNIIPSFHKPHFR-RMRMEHRTVGKAALRG 75
          MAS+  I  ++FKLLFFT+LLI ++++       P  H+PHFR +MRME+R+V KAAL G
Sbjct: 1  MASINNIILIIFKLLFFTLLLITTSSA-----FQPQLHEPHFRKKMRMEYRSVRKAALGG 60

Query: 76 KPAVYDFPWKGGYNPPDNN 93
          KPAVYDFPWKGGYNPP NN
Sbjct: 61 KPAVYDFPWKGGYNPPHNN 74

BLAST of CcUC01G008860 vs. ExPASy TrEMBL
Match: A0A6J1CHY3 (uncharacterized protein LOC111011803 OS=Momordica charantia OX=3673 GN=LOC111011803 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.7e-14
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 14  TTMASMKITWMVFKLLFFTVLLIVSAASPTEDNIIPSFHK-PHFRRMRMEHRTVGKAALR 73
           TTMAS++I++ V KL FF +LLI S  S +     PS HK P  R++ ME+R+VGKA LR
Sbjct: 40  TTMASLRISF-VLKLFFFALLLIASRVSAS----TPSIHKRPRIRKLGMEYRSVGKAVLR 99

Query: 74  GKPAVYDFPWKGGYNPPDNN 93
            K A YDFPWKGGYNPP+NN
Sbjct: 100 AKAASYDFPWKGGYNPPNNN 114

BLAST of CcUC01G008860 vs. ExPASy TrEMBL
Match: A0A0A0L653 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 0

Query: 24 MVFKLLFFTVLLIVSAASPTEDNIIPSFHKPHFRRMRMEHRT-VGKAALRG---KPAVYD 83
          ++ KLLFF++LLI S  S T + + P FHKP  R++ ++ +T  GKA +     KP   D
Sbjct: 9  LLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPRVIKPTSED 68

Query: 84 FPWKGGYNPP 90
          FPW GGY  P
Sbjct: 69 FPWGGGYIHP 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK18975.11.1e-1661.54hypothetical protein E5676_scaffold418G00680 [Cucumis melo var. makuwa][more]
KGN53822.13.7e-1562.03hypothetical protein Csa_015192 [Cucumis sativus][more]
XP_022141390.11.2e-1358.75uncharacterized protein LOC111011803 [Momordica charantia][more]
KAG6602002.14.2e-1155.84hypothetical protein SDJN03_07235, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8650426.12.9e-0444.29hypothetical protein Csa_009889 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D6195.5e-1761.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KZM01.8e-1562.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152270 PE=4 SV=1[more]
A0A6J1CHY35.7e-1458.75uncharacterized protein LOC111011803 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A0A0L6531.4e-0444.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC01G008860.1CcUC01G008860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane