CcUC01G008600 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC01G008600
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionDNA-directed RNA polymerase II subunit RPB7
LocationCicolChr01: 9212728 .. 9221684 (+)
RNA-Seq ExpressionCcUC01G008600
SyntenyCcUC01G008600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCATAAGGATGTGTCACCAGATGCCATCACTTGCACCAAAGCTAAAAAATATAAAGAATGTTTGGACTTACTTCCAAGGTTTGCTATCCAAAAGTGTCGATGTTGATAATAGAACAGTTTTCATAGACTCATTAAGAGCTCTATGACTTGAAATTTTCTACTCAGCTTCAAGAAGGAACGACACATAGGTTCATGGACTCGATAGGTTTCCATTTATTTTCCCTCTCTATTCCAATTTTTATTTTTGTAGATTGCTTGCCTTTATAGATCGTTTCATCGTGATTTCTGATATGTGTTATTGAAGATTACTTTGTTGTAGTTTTTACTCTTTCTTCATTGATCATTTTTATTTTGCTAATTGATTTCTGGAGTTGAAAAAATTGATAAGGGACAAACACTTCTTCAAATTCAACAAGACTCTTGGCCTTCTAATAAAGTTTTAGTTAGTACGTAGATTGATCTATTGATTATTTTATTTCTTTATTTTTTATTTCAATATTTTTTTAAACTTCTTTTTACTTGATACTTTTTTTTTTAGTTTGATGAAGACTTATTCACTGCATGCAATGTCTTGACCACAAACATAATCAAGTTGGAGTTATTTTGGAATTTGATATCGACAAGTTGGAGTTATCTTGGAATTTGATATCGACATGTTTTGTAATTTATAAATTTATGTTGTGTTTCATCTCAAAGTTTTTAGTACTCATTACTCAATCTCTTTTTTGTTGGAATATATGATCTTGTATTGAATGATTATTTTGTATAATATTTATTTTGGGGATTATATAAATATAATTTTATTTGACTTCTAATATGTAACAGTGCATGAAACACAACAATAGAATTATGAATATTCGATAAGTTAAAAAATATGCAAAAATGAGATTCCTTAGCTATAAAAAGCTAATAAATGCTATGAAGACAAAAAGTTTTGACAACAAGGCTTATTATAGCTTTCATTAGTTGAGGTAGGAGTGAGAGAAAATGGAAGAGGTGATGAGTTGTAGATTAGGCAAGAGCATTTTTAACTTGTTTTTTTTCTTTTTTAAGGATACTAATGCAACTTTTAAGAATTTATATTTATGCAATGAGATATTAACAGTTTTTGTTTATATATCAAGAGTAAGGGTATTTTTGAACATTTCTTTAAGTTTAAGGGTATTTTTTAAAACTTTTGGAAGTTCAAAGGTATTTTTAAAACAAAACGTTAACGGTTTCCATCCAAAACTAATGGTAAGAGTACTTTTGAACTCCTTTTTAAAAGTTCAAGGGTATTTTTGAAACTTTCAAAAGTATAAGATATTTTTGACACTAAGTATAAAGTTCAAGGGCATTTTGTATAATTTAGCCTTAAATAAATGACTTGACTAATTTGAACCAAGCCGACTTAAATGTTTCAAAGTTGGGTTGAAGAAATTTACAACCCACACAATTGAGTTGGGTCTAAAAAATGCTTCAACCCGACCCAACTCAACCCTCAAACCTCCTTATTCATAGCCAAATATATTTTATATTTGACAATTTATCCTTTTGGTATGTTGGGAGATTTTAATTTTGGTATTTTTTGAGATTCTTTTATTTTGACTTAAATTTTGGTTTTTATTTTGGTTGCTAAAAAATTTGGTGTAAGAATTAGAAAAACAAGAGAAAAGTGAGAGTATCTATATAAAAAAAAATTGAGGATATCTATATAATTTATTTTTAAATTATTATTATTTTTTTAGTACAAGAAAACTTCAAACAAATTACTCAAGAACTAGACTCAAGCAATTGTGCCTGCCAGTCAAGACAGGAAGGTGGGACGCTATCCCACCTCAGTCATTTTCGAGGAGTAATTCTCAAAGTGCTTTCTAGGTTCACGAACACGATCCGAAAATCGTCCTTTTTTTTCTCCACTCGGACCAATCCGCCTACTTGGCTTCATGTATGATTACAGGTCGAACAAAAACAAAATACTTTTTCTTGGTAGGTGTGATTCACTAGACATAAATCCAATTTTTCAATTTTTTTGATTTCTTAGAATTTTTTTTACTCTTCCAAGTGGTATCAAGATGCCATTGTGTCAGGATATCTTATCCATCTCTCCAAGAAAACGCATATATCCAGAAAATATTTTGAGTTCAATCCTTTTTTTTTCTTTCTCCCCCTGATTTAGTGTCATTTTGGGTAGATTTTGAAAGTATTTGAAAAAATAAGGTGATTTGCAAACTATTTGCAAAAATAGGGTGATATTCAATTCAATCTGTTGGACAGACTGAACACTTTTTTTAAAAAAAATTATTTCTCTCGCTTTCTAGTCAATTAAAAGGTGCATTCTTTTTTTTTTTTTTATCAAATTATTTCCTTTTTTTTTTTTTTTTTCTAAATTATACAAAATACCCATAAATTTTATACTTTGCGTAAAAATAACCTTGGACTTTCAAAAGTTTCAAAGATACTCTTAAACTTTCAAAATGAGTTAAAAAAATACCTTTAAATTTGTTTTGGAGGGAAACCATTAATGTTTTATGTAAAAAATATTATTGAACTTTCAAAAGTTTCAAAAATATTCCTAAATTTAAAAAAAAAAAATTAAAAAAATACCCTTATTGTTATATGAACAAAAACCATTAATACTATCTTACTTCTCCATTTTCCCTCTTTTTTCTCATTTCACTTCTTCAATACTCGCCTACTCCCCTTTTTGTTAAATGTTTTCATTTGTATATCTAATAAATAAATAAATAAGTGCACACTTTAGTTAAGGTGTACTAACTATAATAAGAAGAAAGAGAATAAAAGAAACACCAAAGGATTTTAAGAAAGTTGTATGTTAGTAATGGTGTGTGTGTTAATAGCCAAATACTTTTTTATTTGACTATTTACTGTTTTGGTATATTAAAGGAATATTTTGATTTTGAAATTTTGTGAGATTTTTTTGTTTTAACTTTAAATTTTTGTTTTTATTTTGGTTACTGAAAAATTTGGTGTAAGAATTAGAAAATGAGAGTATCTATATAAAAAATGAGGATATCGATATAATTTGTTTTAGAATTGACTTTTTTTTTTTTTTTTTAACTCAATAGAACTTCAAACAAATTGATCGTCATATTAACCATAGGAGCATTATTATTATTATTATATAAAATTTTACAATTATTTTTTTCAACAAGGTATCAACGGTTGTTCATATACTAACAGTGAATGTATTTTTGAATTTTTTAGAGGTGTAAAGGTATTTTTGAAACTTTTGAAAGTTTAGGGTATTTTTTAAACAAAACTTTAAAGATTTCCATCTAAACCTAATGACAATGGTATTTTTGAACTCTTTTTGAAAATTTAAAGACATTTTTGAAACTTTTAAAAGTTTTAGGATATTTTTGACACAAAATACAAAGTTCACAGATATTTTTTATAATGTAACCAATTTTTTCCTATCTTCGTTCCTAGTGGATACAATTTTTATTGTGTATATATATATATTTTTTATCTTGTATCACTTTTTTTTGCTTCATAAATTTTTGTTTACCTTTTAATCAAATTACAAATATATATATATAATTTTCAAAAGAAAACATGATTCTTTTAAAGTAACCGTTAGTCATTAAATCAACAAATTTCTTTTCCCATTGAAAAAATAGACAATATTTTTTAAATACCAAATTATAAAATTTGTTTACTCAACAAAATCACACAATAAATATGTAAAAGAAAGGGAAGTAACAATTATTTTAACCCTTATTTTGCTATAGTAAAATTGTTTACAATGGAGTGGTTAAAACTTAAAATAACCAACTCTATCTCCCTCCAATGAGTCCAATGACTCCATCTATCAACTGGCTATAGTAAAATTGTTTACAATGGAGTGGTTAAAACTTAAAATAACCAACTCTACTTCCCTCAAGTGATTCCAATGACTCCATCTATCAACGGCCACCTCTGACAACTAACTCCAATGAAGACCATATTCAACCCCTAATTTAGGTGATAACCACCTTTGGCGACTAACTCCTTCGAATTAAACTAGAGAATAAGATTTTAAAATGCCAAGGAATCTTTTACAACAATATCTACATTCTAATTTATTGATATAATTTAATAATTTATTTTCTTCGTAAAACATGCTCAATCAACAAAATTTCTTAAATTGCTTGTTTTTAAATTTTCATCAAAGTGCTTATTTTCGTTGAATTTAAGGGTCGAGATGATCTTCACTGGAGTTGGTTGCCAGAGGTGATCATCGATGGGTAAAGTCATTTGAAACAGGAGGGGCACAATTGGTTAGTTTAAGTTTTAACCACTTGGTTGTAAATAACTTTCATGTAGGAAAATGAATGTTAAAATAACCGTCACTTCTTATTGTTTTACATATTTATTGTATAATTTTGTCGAGTAAACAGATTTTATAGTTTGGTTTTTATAAAACATTATCTATTTTTTCAATGAGAAAGAAATTTGTTGATTTGATGACTAACTGTTACTTTAAAATATCAATATTTTCCTTACCAATTTTGAAACTTGTATATATTTATAATTTGGTTAAAAGATAAATTAAAATTATAAAGCAAAAGATGTATAAAAGATGAAACAAATTTAAAATAAAAAATTTATCAAATATGAAAAGGAAAAATAAAATAAGAAAGATGAAAAAAAAAAAACAATGAATAAAAAAAGATGCACCCGGTTGAATAGACTTAAAAAAGCCAAAGAAATATATAAATATATAAAGAAAGTGCATTGAGTCTTTCCAACGGACTGAATTGAACAACACAACAAAATACCCCTACGTTCTAAATTCACCCTAAAATGACATAAATTCAGGAGCATTTTAAACGGTTTTTATTTTTATTTTTATTTTTGTTAGTGAAAGTATTGTTGAATTTTTTTTAGTTTAAAGATATTTTTAAAATAAAACTTTAATGATTTCCCCTCATCGTAATCGTAATAGTATTCTTGAATATTCTTTTAAAGTTTAAGAATTTATGATTTTTTTTGTCACAAAATGTAAAATTTAGAAAAATTGTTAATAATTTAGTATGAACAGAAAAATAGTTAAAAATAATTATAAATATAGTAAAATTTTATTTTCTATCTATAATAAATTATGATAAATTCAAATAGACATCAATTCAAAATTTATCTATTCACGTTTCTATATTTGTAAATAGATGGATATTTCTTTTATATTTATAATATTTTTCTTTAGAAATAACCATTTACGAAGGAATACCCTACCCTTCCATCCCTTTGAACTTCGATTTCAGTTTCACTCTCACCTTCTCGCCTTTTCCCTCTCCCTGCCCGACGCTGTTGCCGCGCCACCGTCTCTCTCCGTTCAGCGCCGTCGCCGCCCTCCTACCGGTATTCTCTCGATCTCCATCTATGTCATTCTTCACTACAACTCACGTTAGAACTTGTGTAACGAAAGAAACAGGATGTTGCTTTACTTAACCGAACCATCTCAATGTATAGTTGGATTTGATGTTAAACTAAATCATTGAATAGACTTTTCCCCCTATTTTTTAGCATCACATCACATTTTATCCCTAACTAATATCTAGGTCATTTTATCTGCATATAGTTGGGTTTGATGTTAAGATCAAATGCTCTGAATTTATTGTTTGAAGATCGATTCTGTCTAACATTGGTTGTTCTTGCACGATCCCAAATTGAGTCGAGAAATTCACATCAGGCTAGTTGTTTCTTTAACCTATGATTCTCAGATTCTTGATTCACTCCTTCGGCATGTGTTTGACCCTAATCTTTGTGTTGAACATAGAAGTTGCATTCATTGAGTTCATTTGGGTTTTCGTTCAGGTAAAGAGAGCAGCCAGTATGTTCTTCCACATAGTTTTGGAGAGGAATATGCAGCTACATCCACGGCACTTTGGCCGTAACCTCCGTGAGAACCTCGTCTCAAAACTTATGAAAGATGTTGAAGGCACTTGCAGGTTTCTTTACTGTGTTCCCTACCTTTTTGTATTGTTGAACATTCCTGTTGCTCTTATTTTCTTTTTGTTAACTTTAGCGGAAAATGCATGTGATAAGATGTAGTGCTAGATTTGATCAGATTATGCTATATCCTTGGGTGGCATCCCATTAGCTTTATTTCACCTATAAGGCGGCAATTATATGATTTTTTTTCATTATATTTAACTTTTCTTCTTAGTGTTTTTAATGGATGACGTAATAATGTGAAAACATATTGTTAATATGTTTGATAGAGAGAGGGGCTGGACATCTGAGAAACATGTGAAAACTGAAAGGATAGTTGTTTTAATAGACATCTCAGATTTTTACATCAGTTGTTTAATTAAACATCCAACTCTTATTGCAGCAACGAAACTTCCAAGTTCCAATGGGGTGAGGAACAAAAGTTCAGATTACTAGTTGGGCAATCCATGGTGGCCACCTACCTAGGAATTACGAGTTTCTTTGACACAAAAATGTTGTAGGGTCAAACGAGTTGTCCTGTGAGATTAGTTGAGATCTATGTAGGTTGGCTTGGACACTCATGGATATTAAAAAAAATTGGGCAAGATGTTGGTGGTCAAATATTAGGGAGAATTTTTATTTATCTATACTAGACATGTTTTTAATTTTTAAATCTTGATTAGAAATGTTCAAAGAAGTGAGAATTACAAAAAAAAAAAAAAAAAAAAGGTTAGGATGGTATTGGGTCACACTCCATTGATATTAGAATTAGGGTAACTTTTTCTTGGTTCCTTCACCCTTCTGTTTTATGAACGTGTGATCTTTACTATTCAAATCAGGGGAATACATTCTCCTCTAACACCATGCATAAAGGCTCAGAATTGCCTTAATGATGGGATAGAGGGAGCATAACTGATGTCTGATGGTGGTTTAAATTTTGTTTCCTAGCATTTTTCCTGTGTTGCATGGTAACATAAAATTCTATTCTGATGCATATGCATGTCAGTTCATCTTTATATAAAGGACAACATAATCAGTTCATGAACAGATGAAAGCAAATAAAGGACAACATAATCAGTTCATGAACAGATGAAAGCAAATAAAACAGATTAATGGATGATATTTCTTTTGAACGTTTGATACTTCTTTTCAACTAGTGAACGGTTAGCGGGATTTCGTTATTGATAAAATTTTGTATGTTGACACAGTGGCCGACATGGTTTTGTTGTGGCAATTACGGGAATTGAGAATATTGGGAAAGGGTTGATCCGTGATGGAACAGGTTTTGTCACTTTTCCTGTTAAGTACCAATGTGTCGTGTTTAGACCATTCAAGGGAGAAATTTTAGAAGCCGTTGTTACTATGGTAAATAAGGTATGTATTTGTCACATTTTTACTATTAGATAGTAATTTATTAGTTTATTTTAAATAATAAATACATTAATGACTGCAACTGCAACTATTGTAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATGTAAGTAGATATTTATAGCCAATTTCAATTATCATCTTTTTTCTCTTTGGTTCTCTTTACAAGCCACCAAGGATCCTGGGGCTTGGACAGAAAAGTAACTATATGAAAAAGTGGATCGTAAAAATATTGAGAGAGCGATTCACAAATTCGTTATGAATGCTGTCACCCGTAGTGTTCGTTGTGCAGTGAAGTACTTAAGCAAGCTAACACTTCTTCTCAAGTTTCTAGTTTGTTCTTTTGATATTTCTCAGCGTTGTTGTGCCACGTTGGATCAAATCTAAATGGAGCAAACACCTCCTACTTAATTACTACCACTAAACTGAATTTGCAACAGCAACATCTTGGCTTTTATTCCTATCATATATTTCCCTCATAAATGTTTTTAGCTTTCAATTTTGTCTAAAGTTAGTTATCTCACATCTTGTGATTCAGTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATGTGCCAAACTATACCACCTCGGATGGATCAGTATGTTTCTATAGTACATGCATTCTCTAACATAAATTGATAATGCTCTTGTGTTAAATTTATCGAATTATTTCTATTCTCTTGTAGGTTAAGATTCAGAAAGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGATGCAACTGAAATTGTAATGCCTTTTCTTCCGTATTTAGAAATGTTTTTCTTTTTTTAAAAAATTATTTGTTCTGTCCTCTGCATGTTAATTTTAAATTTCTATGCAAATTTAGTGCTTCGCCTTCATTCTTACAATTTTTAGATCAAAGGGATTCCCTTGGTAGCTAAGAATTGAAAGGTTCCTAAGTTTTTAAAATCCTGAATAATTTAAAATTTTCCCCCTTTTATCTCAGTTTTGGAGTAGGTGCAAATGTTGATATTTTAGTGATAGAAAAAATATATTGGGCTGAATGAATCTTAGTTTTGAGATTCTTTTAAACTTTTTGCATGAAAGTTCAAAAGTTGTGTCCAAAGGTACTGTTGATCTATTTGGCATATATGCTCTCAAGTGGTGAAAATATTAAAAACTTGATAACTCCATGTTAGTTACTTTTTGTGACTTTGGTAGAATTGCGTGCGATTATCAAATTCTGAAATCTAATGTGATTCATTTAACTATTATTGCTTTTGTTTGCAGTTTTGTATTGGAACCATAAAAGATGATTTCTTGGGTGTGATCAATGACCCTTCCGCGGCTTAGGTGTTAATCTCGTTCAAGAGATTCTTTGAGTTGCCAGTTTGTATATTGTTACTTATTAACCTTGACATTGAAAAAAATTCTATTTTGCTGTATAGTTTTTGCATTTTCTCACCTGTTTATCCATTTACTTATATGGATATGGATCCTGTTGTTAATTACTTGGAGTGTTGGCATTTGCCCTATAATTCATAGGGTTAAATTATAAATTTGAGCCCTATACTTTAGAGAATTAGAATGTAGCTTAAAGTTTATAATCTTTATGGTTTGATCAACTTTATGAATAGTCCTCTTTGTTA

mRNA sequence

ATGGTTCATAAGGATGTGTCACCAGATGCCATCACTTGCACCAAAGCTAAAAAATATAAAGAATGTTTGGACTTACTTCCAAGATTGCTTGCCTTTATAGATCGTTTCATCTTTGATGAAGACTTATTCACTGCATGCAATGTCTTGACCACAAACATAATCAAGTTGGAGTTATTTTGGAATTTGATATCGACAAAAATAACCATTTACGAAGGAATACCCTACCCTTCCATCCCTTTGAACTTCGATTTCAGTTTCACTCTCACCTTCTCGCCTTTTCCCTCTCCCTGCCCGACGCTGTTGCCGCGCCACCGTCTCTCTCCGTTCAGCGCCGTCGCCGCCCTCCTACCGGTAAAGAGAGCAGCCAGTATGTTCTTCCACATAGTTTTGGAGAGGAATATGCAGCTACATCCACGGCACTTTGGCCGTAACCTCCGTGAGAACCTCGTCTCAAAACTTATGAAAGATGTTGAAGGCACTTGCAGTGGCCGACATGGTTTTGTTGTGGCAATTACGGGAATTGAGAATATTGGGAAAGGGTTGATCCGTGATGGAACAGGTTTTGTCACTTTTCCTGTTAAGTACCAATGTGTCGTGTTTAGACCATTCAAGGGAGAAATTTTAGAAGCCGTTGTTACTATGGTAAATAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATGTGCCAAACTATACCACCTCGGATGGATCAGTTAAGATTCAGAAAGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGATGCAACTGAAATTTTTTGTATTGGAACCATAAAAGATGATTTCTTGGGTGTGATCAATGACCCTTCCGCGGCTTAGGTGTTAATCTCGTTCAAGAGATTCTTTGAGTTGCCAGTTTGTATATTGTTACTTATTAACCTTGACATTGAAAAAAATTCTATTTTGCTGTATAGTTTTTGCATTTTCTCACCTGTTTATCCATTTACTTATATGGATATGGATCCTGTTGTTAATTACTTGGAGTGTTGGCATTTGCCCTATAATTCATAGGGTTAAATTATAAATTTGAGCCCTATACTTTAGAGAATTAGAATGTAGCTTAAAGTTTATAATCTTTATGGTTTGATCAACTTTATGAATAGTCCTCTTTGTTA

Coding sequence (CDS)

ATGGTTCATAAGGATGTGTCACCAGATGCCATCACTTGCACCAAAGCTAAAAAATATAAAGAATGTTTGGACTTACTTCCAAGATTGCTTGCCTTTATAGATCGTTTCATCTTTGATGAAGACTTATTCACTGCATGCAATGTCTTGACCACAAACATAATCAAGTTGGAGTTATTTTGGAATTTGATATCGACAAAAATAACCATTTACGAAGGAATACCCTACCCTTCCATCCCTTTGAACTTCGATTTCAGTTTCACTCTCACCTTCTCGCCTTTTCCCTCTCCCTGCCCGACGCTGTTGCCGCGCCACCGTCTCTCTCCGTTCAGCGCCGTCGCCGCCCTCCTACCGGTAAAGAGAGCAGCCAGTATGTTCTTCCACATAGTTTTGGAGAGGAATATGCAGCTACATCCACGGCACTTTGGCCGTAACCTCCGTGAGAACCTCGTCTCAAAACTTATGAAAGATGTTGAAGGCACTTGCAGTGGCCGACATGGTTTTGTTGTGGCAATTACGGGAATTGAGAATATTGGGAAAGGGTTGATCCGTGATGGAACAGGTTTTGTCACTTTTCCTGTTAAGTACCAATGTGTCGTGTTTAGACCATTCAAGGGAGAAATTTTAGAAGCCGTTGTTACTATGGTAAATAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATGTGCCAAACTATACCACCTCGGATGGATCAGTTAAGATTCAGAAAGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGATGCAACTGAAATTTTTTGTATTGGAACCATAAAAGATGATTTCTTGGGTGTGATCAATGACCCTTCCGCGGCTTAG

Protein sequence

MVHKDVSPDAITCTKAKKYKECLDLLPRLLAFIDRFIFDEDLFTACNVLTTNIIKLELFWNLISTKITIYEGIPYPSIPLNFDFSFTLTFSPFPSPCPTLLPRHRLSPFSAVAALLPVKRAASMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Homology
[Close]
BLAST of CcUC01G008600 vs. NCBI nr
Match: KAG6579070.1 (hypothetical protein SDJN03_23518, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 377.5 bits (968), Expect = 1.1e-100
Identity = 190/214 (88.79%), Postives = 196/214 (91.59%), Query Frame = 0 

Query: 95  SPCPTLLPRHRLSPFSAVAALLPV---------KRAASMFFHIVLERNMQLHPRHFGRNL 154
           SPC TLL   RLSPFSA AA LP+          + A+MFFHIVLERNMQLHPRHFGRNL
Sbjct: 47  SPCLTLLSARRLSPFSATAASLPLCPAAAASLPVQGATMFFHIVLERNMQLHPRHFGRNL 106

Query: 155 RENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKG 214
           RENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLI DGTGFVTFPVKYQCVVFRPFKG
Sbjct: 107 RENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKG 166

Query: 215 EILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEV 274
           EILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTSDGSVKIQKDSEV
Sbjct: 167 EILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEV 226

Query: 275 RLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 300
           RLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 227 RLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 260

[Close]
BLAST of CcUC01G008600 vs. NCBI nr
Match: KAG7032688.1 (hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.8 bits (922), Expect = 2.3e-95
Identity = 175/180 (97.22%), Postives = 179/180 (99.44%), Query Frame = 0 

Query: 120 RAASMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGK 179
           + A+MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGK
Sbjct: 2   KGATMFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGK 61

Query: 180 GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDD 239
           GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDD
Sbjct: 62  GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDD 121

Query: 240 MEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 299
           MEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 122 MEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 181

[Close]
BLAST of CcUC01G008600 vs. NCBI nr
Match: XP_004150740.1 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_011655125.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_031742310.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >KGN50884.1 hypothetical protein Csa_023096 [Cucumis sativus])

HSP 1 Score: 359.4 bits (921), Expect = 3.0e-95
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 124 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 183
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 184 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 243
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 244 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 300
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]
BLAST of CcUC01G008600 vs. NCBI nr
Match: XP_038906688.1 (DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906690.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida])

HSP 1 Score: 358.2 bits (918), Expect = 6.8e-95
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 124 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 183
           MFFHIVLERNMQLHPRHFGRNLR+NLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 184 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 243
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 244 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 300
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]
BLAST of CcUC01G008600 vs. NCBI nr
Match: XP_038906991.1 (DNA-directed RNA polymerase II subunit RPB7-like [Benincasa hispida])

HSP 1 Score: 357.5 bits (916), Expect = 1.2e-94
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 124 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 183
           MFFHIVLERNMQLHPRHFGRNLR+N+VSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRDNIVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 184 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 243
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 244 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 300
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]
BLAST of CcUC01G008600 vs. ExPASy Swiss-Prot
Match: P46279 (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 3.2e-95
Identity = 169/174 (97.13%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 124 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 183
           MFFHIVLERNMQLHPR+FGRNLR+NLVSKLMKDVEGTCSGRHGFVVA+TGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 184 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 243
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 244 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPS 298
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA 174

[Close]
BLAST of CcUC01G008600 vs. ExPASy Swiss-Prot
Match: P38421 (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 9.5e-92
Identity = 163/176 (92.61%), Postives = 171/176 (97.16%), Query Frame = 0 

Query: 124 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 183
           MFFHIVLERNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 184 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 243
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 244 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 300
           +GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP+AA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]
BLAST of CcUC01G008600 vs. ExPASy Swiss-Prot
Match: Q5E9B8 (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 6.7e-53
Identity = 94/172 (54.65%), Postives = 130/172 (75.58%), Query Frame = 0 

Query: 124 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 183
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 184 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 243
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 244 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 295
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]
BLAST of CcUC01G008600 vs. ExPASy Swiss-Prot
Match: Q7ZW41 (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=2 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 6.7e-53
Identity = 95/172 (55.23%), Postives = 130/172 (75.58%), Query Frame = 0 

Query: 124 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 183
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 184 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 243
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 244 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 295
            + + P Y T D  V IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]
BLAST of CcUC01G008600 vs. ExPASy Swiss-Prot
Match: P62487 (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 6.7e-53
Identity = 94/172 (54.65%), Postives = 130/172 (75.58%), Query Frame = 0 

Query: 124 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 183
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 184 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 243
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 244 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 295
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]
BLAST of CcUC01G008600 vs. ExPASy TrEMBL
Match: A0A0A0KPS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.5e-95
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 124 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 183
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 184 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 243
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 244 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 300
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]
BLAST of CcUC01G008600 vs. ExPASy TrEMBL
Match: A0A6J1JSG6 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=LOC111487136 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 7.3e-95
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 124 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 183
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 184 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 243
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 244 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 300
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]
BLAST of CcUC01G008600 vs. ExPASy TrEMBL
Match: A0A6J1E6V3 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 GN=LOC111431229 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 7.3e-95
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 124 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 183
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 184 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 243
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 244 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 300
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]
BLAST of CcUC01G008600 vs. ExPASy TrEMBL
Match: A0A6J1FGH6 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445199 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 7.3e-95
Identity = 176/191 (92.15%), Postives = 183/191 (95.81%), Query Frame = 0 

Query: 111 AVAALLPVKR--AASMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFV 170
           A  A+L  ++   A+MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFV
Sbjct: 58  AATAMLETRKVQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFV 117

Query: 171 VAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ 230
           VAITGIENIGKGLI DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQ
Sbjct: 118 VAITGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQ 177

Query: 231 IFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDD 290
           IFVSNHLIPDDMEFQSGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDD
Sbjct: 178 IFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDD 237

Query: 291 FLGVINDPSAA 300
           FLGVINDP+AA
Sbjct: 238 FLGVINDPAAA 248

[Close]
BLAST of CcUC01G008600 vs. ExPASy TrEMBL
Match: A0A2I4HHD1 (DNA-directed RNA polymerase II subunit RPB7 OS=Juglans regia OX=51240 GN=LOC109017848 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 9.6e-95
Identity = 173/176 (98.30%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 124 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 183
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 184 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 243
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 244 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 300
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]
BLAST of CcUC01G008600 vs. TAIR 10
Match: AT5G59180.1 (DNA-directed RNA polymerase II )

HSP 1 Score: 338.2 bits (866), Expect = 6.8e-93
Identity = 163/176 (92.61%), Postives = 171/176 (97.16%), Query Frame = 0 

Query: 124 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 183
           MFFHIVLERNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 184 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 243
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 244 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 300
           +GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP+AA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]
BLAST of CcUC01G008600 vs. TAIR 10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 76.6 bits (187), Expect = 3.7e-14
Identity = 43/132 (32.58%), Postives = 75/132 (56.82%), Query Frame = 0 

Query: 166 GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 225
           G+ VA+T ++ IG+G IR+ TG V FPV +  + F+ FKGEI+  VV  V K G F   G
Sbjct: 47  GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106

Query: 226 PVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTR--VDATEIFCIG 285
           P++    ++    D ++  G+ P +     S +IQ ++ VR+ +IG +      E   + 
Sbjct: 107 PIENVYLSYTKMPDYKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQALA 166

Query: 286 TIKDDFLGVIND 296
           +++ D+LG +++
Sbjct: 167 SLEGDYLGPLSE 177

[Close]
BLAST of CcUC01G008600 vs. TAIR 10
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 76.3 bits (186), Expect = 4.8e-14
Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = 0 

Query: 166 GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 225
           G+++  T +ENIG+G I++ TG + FPV +  + F+ FKGEI+  VV  V+K G F ++G
Sbjct: 46  GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105

Query: 226 PVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGT--RVDATEIFCIG 285
           P +I   +H+     EF  G+ P +     S +IQ  + VR  ++ T  R    +   + 
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQIGARVRFVVLDTEWREAEKDFMALA 165

Query: 286 TIKDDFLG 292
           +I  D LG
Sbjct: 166 SIDGDNLG 172

[Close]
BLAST of CcUC01G008600 vs. TAIR 10
Match: AT1G06790.2 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 44.3 bits (103), Expect = 2.0e-04
Identity = 26/87 (29.89%), Postives = 42/87 (48.28%), Query Frame = 0 

Query: 124 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 183
           MF+   LE ++++ P      L + + S L            G  V+I  I+++  G + 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 184 DGTGFVTFPVKYQCVVFRPFKGEILEA 211
            G G  T+ V  + VVFRPF GE++ A
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAA 87

[Close]
BLAST of CcUC01G008600 vs. TAIR 10
Match: AT1G06790.1 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 44.3 bits (103), Expect = 2.0e-04
Identity = 26/87 (29.89%), Postives = 42/87 (48.28%), Query Frame = 0 

Query: 124 MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 183
           MF+   LE ++++ P      L + + S L            G  V+I  I+++  G + 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 184 DGTGFVTFPVKYQCVVFRPFKGEILEA 211
            G G  T+ V  + VVFRPF GE++ A
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAA 87

The following BLAST results are available for this feature:
BLAST of CcUC01G008600 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6579070.11.1e-10088.79hypothetical protein SDJN03_23518, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7032688.12.3e-9597.22hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_004150740.13.0e-95100.00DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_011... [more]
XP_038906688.16.8e-9599.43DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 ... [more]
XP_038906991.11.2e-9498.86DNA-directed RNA polymerase II subunit RPB7-like [Benincasa hispida][more]
BLAST of CcUC01G008600 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P462793.2e-9597.13DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1[more]
P384219.5e-9292.61DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB... [more]
Q5E9B86.7e-5354.65DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1... [more]
Q7ZW416.7e-5355.23DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=... [more]
P624876.7e-5354.65DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE... [more]
BLAST of CcUC01G008600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPS41.5e-95100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1[more]
A0A6J1JSG67.3e-9598.86DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1E6V37.3e-9598.86DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1FGH67.3e-9592.15DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Cucurbita moschata OX=... [more]
A0A2I4HHD19.6e-9598.30DNA-directed RNA polymerase II subunit RPB7 OS=Juglans regia OX=51240 GN=LOC1090... [more]
BLAST of CcUC01G008600 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G59180.16.8e-9392.61DNA-directed RNA polymerase II [more]
AT4G14660.13.7e-1432.58RNA polymerase Rpb7-like, N-terminal domain [more]
AT3G22900.14.8e-1434.38RNA polymerase Rpb7-like, N-terminal domain [more]
AT1G06790.22.0e-0429.89RNA polymerase Rpb7 N-terminal domain-containing protein [more]
AT1G06790.12.0e-0429.89RNA polymerase Rpb7 N-terminal domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005576RNA polymerase Rpb7-like , N-terminalPFAMPF03876SHS2_Rpb7-Ncoord: 131..187
e-value: 1.5E-12
score: 47.6
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyGENE3D3.30.1490.120coord: 123..203
e-value: 7.9E-28
score: 98.6
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilySUPERFAMILY88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 124..201
IPR003029S1 domainPFAMPF00575S1coord: 201..279
e-value: 4.3E-16
score: 59.0
NoneNo IPR availableGENE3D2.40.50.140coord: 204..294
e-value: 2.3E-36
score: 125.7
NoneNo IPR availablePANTHERPTHR12709:SF8BNAA10G12180D PROTEINcoord: 113..299
NoneNo IPR availableCDDcd04462S1_RNAPII_Rpb7coord: 204..291
e-value: 9.53748E-46
score: 147.793
NoneNo IPR availableCDDcd04329RNAP_II_Rpb7_Ncoord: 125..204
e-value: 4.54623E-39
score: 130.38
IPR045113RNA polymerase Rpb7-likePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 113..299
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 202..292

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC01G008600.1CcUC01G008600.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic
biological_process GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
biological_process GO:0045948 positive regulation of translational initiation
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0000932 P-body
cellular_component GO:0005665 RNA polymerase II, core complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003697 single-stranded DNA binding
molecular_function GO:0003727 single-stranded RNA binding
molecular_function GO:0031369 translation initiation factor binding
molecular_function GO:0003676 nucleic acid binding