CcUC01G008500 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC01G008500
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionDNA-directed RNA polymerase subunit beta''
LocationCicolChr01: 9082012 .. 9084737 (+)
RNA-Seq ExpressionCcUC01G008500
SyntenyCcUC01G008500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATATGGAGCTATACAAATGAAAGACTGGAGTCTTAACCCTGTTTTGATAGAGTAAAAAGTAATGCATAATGAGTGCAAGAGTCAAAGACAACAGATGCATGGAACTTTGTGTATAGCAGAGTAAAACCATAGATTAGATCAAAATTTACTATTTGCAGACTGTTTTTCTTTCTTGGGTGGCTTAATATCAAAGAAATGTCCCCGTATGTTGTTAAGTCCTTTAATCTGTCTGCTCTACATTAAAGCAGAGGATAACCAAATACATCTATTTTTTCTGTGTTCATATTTTATTTTTGATTTAAGAACCAGCTTTCGTTAAAGAAAAGGAAAGAAAAGAAAATATAACAGCAACACAAAAACGAAATCACAAAACAAAGGAGCCAAAAGAACAAAAACACTAAACTTTCAGTGTTTATACAGTGGCAAGTTTTGGAATAGACTTTCAGAATTTTTTTCTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCTACGAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGTTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGTATACTGCTGTACGAACATCGGTGGATATTTGAACAAAGGGCAAATGATAATGTTTTTCAGCCACTTTGTGGTATGAAATTTAAAAGTAAAGTAAAGTTTTGACATATAAACGCCATAAAAGCTATTATTTGGGATATCCGAGATGAAACTTCTTTTTTTTTGAAGTGGGGGTGCAAAGTATGGATTGAGCCAAAGGCACAAGCCTTTTTGTGGTGTATTGTTCCAAGTTTTCCCTGTAATTCTTCTCATAATGTAATTATTCCCAGTTGGGGACTTGGGGAGCATTTTCATGATGTTTTGGTTCTCAAAAAAGTCAAGTTTTGGTTCTTCATAATATGAAATTGTAATTTCCTGTGTTTAGGAGAATTGTCTTCTCCTTAAGGTTTTTCATTATCCATCTGTAACTTTTTAATTATTGATGAAAATTTCTATTTCTTTTATTTGAAAAGAAAAAGAAAAAGACAAAGAATTGGATAAGAGACTATCATGTTAGAATACCACTTTGTTCTTTGTACTTTAAGCTTCAATCCATTTTAGTCTATGCGCTTTCAATAAAACTTAAATTCAATCCTTAAAAGTTAATGTTTATCAAACTTGATTAAATAACAATAATAATTTTGGTAAGAATATACACTAGGTGAATGTATTTCCAAAACTTATGGAGGGAAGGCTAATAAAGACTAGATGTTTATAGAAAAATCAACAACAAACTAATAATAGGGACTATTCTTAAGATTTATCAAAAGTTTAGGGACCAAAATAAGATTACAAATAAACAACTAAAATAGAACAAGTCCCAAAGTAATGGGACCACAATCATGTTCTAACCAAACTATTTCATTAAACATATGACAAAGAAACAAACTTAATAACGTTAAGCACAAAATTATTACTTTGCCAGCAATAGAACTCTGATGTTGCATAATTGCTGCCCTATAAGTTTCCGTCCGTACACTATCCTGAAAATAGGTATGTCATTCATAATATCCATCAATGTAAAGAAAGAACAACATGATTGCAGTAAAATTTCTAAATTTACGTGTATTTTTAGCTAATATAATTCATTCATTCTAAATAATTAGCATAAATTCATTAAATTGAACTCAAAACATTTTGAAAGGCTACTCTTGGATGCAGCCATAAGAATAATGGGGATATGGGAAGGATGTGTTGCCGTGTTCTCCTATGAAAAAGGTCATACCAACACATCTCCAAGCTTCCCAATATTTTCAAGCTTCTTTCTTTTAAATTTGGCAATTGGGCTTCAGTTGAATTTCAAGAATATGGCTGATATGGAAGCCTCACTTTATCTGATGTCTTCAAACGGCTTTAAATGCCTGTTCTAATTTCTGAAGGGGTTGCAGTCAAAGTATATATATATATCTGAAACTAGAACTCAGTTTCTTGAAATTCTTTTTTTATAGAGGAGACCATTAAGGACAGAAAAACAGAGAAGTGCCTCTTCCTTTTGGCAAATCTTGACAACATTAATTCTTTCCCTAAACCAAAATACTAAACTACAGCTCAGTCAACCTAGTTCCTTCACCATCAGCCCCTTACAGGGTGTTCTTATTGCCATTTGCCAGGGTCAGGGAGGATATAGATTCTCAGAACTTTTATATATATAAAAGACGTCCCAGAAGTGTAAGGTCTTTCATTAGTCTGTCTTTCTTCAAAGTCTTGATATCAATTAATAAAGTCTAGAAAAGATGTCCTACTCCTACATGCTGCCCGGGTTGAGAAAACCTTGCCATCCCTAAAGTTTCATCGCTCCCAGTGCAGAACAAAATTAATGCAGGAAATTGACATCATCTAACAAAACGCATCAGTAATTCTCACAAATAAAGAACAACAACCGAAACAGACCTTGATCATTTCTTCGTGAATACCAACGTGGGAGTAGGATTGGAAGTAGGCCATGTCAAAGTCAGTACAAGGAGGTCCCTCCACTTGCGTCGGCTGCTTGTCTTCAGAAACCCTCACTCCGCCGCCACTGGATGACCTGCTACCTCTTCCCCGGCGGGGCCGGCCCTTCTGAACGGTTCCGGGCCGCTTCTCGGAGGAGGAGCCGCCGTCGTGGAAGCCGTTAA

mRNA sequence

ATGGACTGTTTTTCTTTCTTGGGTGGCTTAATATCAAAGAAATGTCCCCTGGCAAGTTTTGGAATAGACTTTCAGAATTTTTTTCTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCTACGAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGTTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGTATACTGCTGTACGAACATCGTACAAGGAGGTCCCTCCACTTGCGTCGGCTGCTTGTCTTCAGAAACCCTCACTCCGCCGCCACTGGATGACCTGCTACCTCTTCCCCGGCGGGGCCGGCCCTTCTGAACGGTTCCGGGCCGCTTCTCGGAGGAGGAGCCGCCGTCGTGGAAGCCGTTAA

Coding sequence (CDS)

ATGGACTGTTTTTCTTTCTTGGGTGGCTTAATATCAAAGAAATGTCCCCTGGCAAGTTTTGGAATAGACTTTCAGAATTTTTTTCTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCTACGAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGTTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGTATACTGCTGTACGAACATCGTACAAGGAGGTCCCTCCACTTGCGTCGGCTGCTTGTCTTCAGAAACCCTCACTCCGCCGCCACTGGATGACCTGCTACCTCTTCCCCGGCGGGGCCGGCCCTTCTGAACGGTTCCGGGCCGCTTCTCGGAGGAGGAGCCGCCGTCGTGGAAGCCGTTAA

Protein sequence

MDCFSFLGGLISKKCPLASFGIDFQNFFLSGARGNASQVHQLVGMRGLMSDLRGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVYTAVRTSYKEVPPLASAACLQKPSLRRHWMTCYLFPGGAGPSERFRAASRRRSRRRGSR
Homology
[Close]
BLAST of CcUC01G008500 vs. NCBI nr
Match: QWQ52671.1 (RNA polymerase beta'' subunit [Eryngium planum])

HSP 1 Score: 120.9 bits (302), Expect = 8.8e-24
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 0 

Query: 28  FLSGARGNASQVHQLVGMRGLMSDLRGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVY 87
           + SGARGNASQVHQLVGMRGLMSD +GQMIDLPIQSNLREGLSLTEYIISCYGARKGVV 
Sbjct: 132 YFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 191

Query: 88  TAVRTS 94
           TAVRTS
Sbjct: 192 TAVRTS 197

[Close]
BLAST of CcUC01G008500 vs. NCBI nr
Match: YP_001542521.1 (RNA polymerase beta' subunit [Cuscuta exaltata] >A8W3B4.1 RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'' [Cuscuta exaltata] >ABW83685.1 RNA polymerase beta' subunit [Cuscuta exaltata])

HSP 1 Score: 120.9 bits (302), Expect = 8.8e-24
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 0 

Query: 28  FLSGARGNASQVHQLVGMRGLMSDLRGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVY 87
           + SGARGNASQVHQLVGMRGLMSD +GQMIDLPIQSNLREGLSLTEYIISCYGARKGVV 
Sbjct: 136 YFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 195

Query: 88  TAVRTS 94
           TAVRTS
Sbjct: 196 TAVRTS 201

[Close]
BLAST of CcUC01G008500 vs. NCBI nr
Match: AEH42622.1 (RNA polymerase beta subunit, partial [Mammea americana])

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-23
Identity = 65/78 (83.33%), Postives = 66/78 (84.62%), Query Frame = 0 

Query: 16  PLASFGIDFQNFFLSGARGNASQVHQLVGMRGLMSDLRGQMIDLPIQSNLREGLSLTEYI 75
           P  SF I       SGARGNASQVHQLVGMRGLMSD +GQMIDLPIQSNLREGLSLTEYI
Sbjct: 128 PFNSFNI----MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYI 187

Query: 76  ISCYGARKGVVYTAVRTS 94
           ISCYGARKGVV TAVRTS
Sbjct: 188 ISCYGARKGVVDTAVRTS 201

[Close]
BLAST of CcUC01G008500 vs. NCBI nr
Match: QEV84703.1 (RNA polymerase beta subunit [Hexalectris grandiflora])

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-23
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 30  SGARGNASQVHQLVGMRGLMSDLRGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVYTA 89
           SGARGNASQVHQLVGMRGLMSD +GQMIDLPIQSNLREGLSLTEYIISCYGARKGVV TA
Sbjct: 134 SGARGNASQVHQLVGMRGLMSDSQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 193

Query: 90  VRTS 94
           VRTS
Sbjct: 194 VRTS 197

[Close]
BLAST of CcUC01G008500 vs. NCBI nr
Match: QHN54933.1 (RNA polymerase beta'' subunit [Anchomanes hookeri])

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-23
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 30  SGARGNASQVHQLVGMRGLMSDLRGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVYTA 89
           SGARGNASQVHQLVGMRGLMSD +GQMIDLPIQSNLREGLSLTEYIISCYGARKGVV TA
Sbjct: 134 SGARGNASQVHQLVGMRGLMSDPKGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 193

Query: 90  VRTS 94
           VRTS
Sbjct: 194 VRTS 197

[Close]
BLAST of CcUC01G008500 vs. ExPASy Swiss-Prot
Match: A8W3B4 (DNA-directed RNA polymerase subunit beta'' OS=Cuscuta exaltata OX=476139 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-26
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 0 

Query: 28  FLSGARGNASQVHQLVGMRGLMSDLRGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVY 87
           + SGARGNASQVHQLVGMRGLMSD +GQMIDLPIQSNLREGLSLTEYIISCYGARKGVV 
Sbjct: 136 YFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 195

Query: 88  TAVRTS 94
           TAVRTS
Sbjct: 196 TAVRTS 201

[Close]
BLAST of CcUC01G008500 vs. ExPASy Swiss-Prot
Match: Q3V544 (DNA-directed RNA polymerase subunit beta'' OS=Acorus calamus OX=4465 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-26
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 30  SGARGNASQVHQLVGMRGLMSDLRGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVYTA 89
           SGARGNASQVHQLVGMRGLMSD +GQMIDLPIQSNLREGLSLTEYIISCYGARKGVV TA
Sbjct: 138 SGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 197

Query: 90  VRTS 94
           VRTS
Sbjct: 198 VRTS 201

[Close]
BLAST of CcUC01G008500 vs. ExPASy Swiss-Prot
Match: A4QJA5 (DNA-directed RNA polymerase subunit beta'' OS=Aethionema cordifolium OX=434059 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-26
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 30  SGARGNASQVHQLVGMRGLMSDLRGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVYTA 89
           SGARGNASQVHQLVGMRGLMSD +GQMIDLPIQSNLREGLSLTEYIISCYGARKGVV TA
Sbjct: 134 SGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 193

Query: 90  VRTS 94
           VRTS
Sbjct: 194 VRTS 197

[Close]
BLAST of CcUC01G008500 vs. ExPASy Swiss-Prot
Match: A4QJI9 (DNA-directed RNA polymerase subunit beta'' OS=Aethionema grandiflorum OX=72657 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-26
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 30  SGARGNASQVHQLVGMRGLMSDLRGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVYTA 89
           SGARGNASQVHQLVGMRGLMSD +GQMIDLPIQSNLREGLSLTEYIISCYGARKGVV TA
Sbjct: 134 SGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 193

Query: 90  VRTS 94
           VRTS
Sbjct: 194 VRTS 197

[Close]
BLAST of CcUC01G008500 vs. ExPASy Swiss-Prot
Match: A4QK08 (DNA-directed RNA polymerase subunit beta'' OS=Arabis hirsuta OX=78191 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-26
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 30  SGARGNASQVHQLVGMRGLMSDLRGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVYTA 89
           SGARGNASQVHQLVGMRGLMSD +GQMIDLPIQSNLREGLSLTEYIISCYGARKGVV TA
Sbjct: 134 SGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 193

Query: 90  VRTS 94
           VRTS
Sbjct: 194 VRTS 197

[Close]
BLAST of CcUC01G008500 vs. ExPASy TrEMBL
Match: F8TCX2 (DNA-directed RNA polymerase (Fragment) OS=Mammea americana OX=198777 GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.6e-24
Identity = 65/78 (83.33%), Postives = 66/78 (84.62%), Query Frame = 0 

Query: 16  PLASFGIDFQNFFLSGARGNASQVHQLVGMRGLMSDLRGQMIDLPIQSNLREGLSLTEYI 75
           P  SF I       SGARGNASQVHQLVGMRGLMSD +GQMIDLPIQSNLREGLSLTEYI
Sbjct: 128 PFNSFNI----MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYI 187

Query: 76  ISCYGARKGVVYTAVRTS 94
           ISCYGARKGVV TAVRTS
Sbjct: 188 ISCYGARKGVVDTAVRTS 201

[Close]
BLAST of CcUC01G008500 vs. ExPASy TrEMBL
Match: A0A5J6KE94 (DNA-directed RNA polymerase OS=Hexalectris grandiflora OX=397655 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 7.3e-24
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 30  SGARGNASQVHQLVGMRGLMSDLRGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVYTA 89
           SGARGNASQVHQLVGMRGLMSD +GQMIDLPIQSNLREGLSLTEYIISCYGARKGVV TA
Sbjct: 134 SGARGNASQVHQLVGMRGLMSDSQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 193

Query: 90  VRTS 94
           VRTS
Sbjct: 194 VRTS 197

[Close]
BLAST of CcUC01G008500 vs. ExPASy TrEMBL
Match: A0A6H0E4Q4 (DNA-directed RNA polymerase OS=Amherstia nobilis OX=162646 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 7.3e-24
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 30  SGARGNASQVHQLVGMRGLMSDLRGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVYTA 89
           SGARGNASQVHQLVGMRGLMSD +GQMIDLPIQSNLREGLSLTEYIISCYGARKGVV TA
Sbjct: 134 SGARGNASQVHQLVGMRGLMSDSQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 193

Query: 90  VRTS 94
           VRTS
Sbjct: 194 VRTS 197

[Close]
BLAST of CcUC01G008500 vs. ExPASy TrEMBL
Match: A0A6B9TXX1 (DNA-directed RNA polymerase subunit beta'' OS=Anchomanes hookeri OX=2544931 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 7.3e-24
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 30  SGARGNASQVHQLVGMRGLMSDLRGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVYTA 89
           SGARGNASQVHQLVGMRGLMSD +GQMIDLPIQSNLREGLSLTEYIISCYGARKGVV TA
Sbjct: 134 SGARGNASQVHQLVGMRGLMSDPKGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 193

Query: 90  VRTS 94
           VRTS
Sbjct: 194 VRTS 197

[Close]
BLAST of CcUC01G008500 vs. ExPASy TrEMBL
Match: A0A2Z5WN17 (DNA-directed RNA polymerase subunit beta'' OS=Dendrobium tosaense OX=183483 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 9.5e-24
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 30  SGARGNASQVHQLVGMRGLMSDLRGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVYTA 89
           SGARGNASQVHQLVGMRGLMSD +GQMIDLPIQSNLREGLSLTEYIISCYGARKGVV TA
Sbjct: 138 SGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 197

Query: 90  VRTS 94
           VRTS
Sbjct: 198 VRTS 201

[Close]
BLAST of CcUC01G008500 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-27
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 30  SGARGNASQVHQLVGMRGLMSDLRGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVYTA 89
           SGARGNASQVHQLVGMRGLMSD +GQMIDLPIQSNLREGLSLTEYIISCYGARKGVV TA
Sbjct: 134 SGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 193

Query: 90  VRTS 94
           VRTS
Sbjct: 194 VRTS 197

The following BLAST results are available for this feature:
BLAST of CcUC01G008500 vs. NCBI nr
Match NameE-valueIdentityDescription
QWQ52671.18.8e-2492.42RNA polymerase beta'' subunit [Eryngium planum][more]
YP_001542521.18.8e-2492.42RNA polymerase beta' subunit [Cuscuta exaltata] >A8W3B4.1 RecName: Full=DNA-dire... [more]
AEH42622.11.2e-2383.33RNA polymerase beta subunit, partial [Mammea americana][more]
QEV84703.11.5e-2395.31RNA polymerase beta subunit [Hexalectris grandiflora][more]
QHN54933.11.5e-2395.31RNA polymerase beta'' subunit [Anchomanes hookeri][more]
BLAST of CcUC01G008500 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A8W3B41.2e-2692.42DNA-directed RNA polymerase subunit beta'' OS=Cuscuta exaltata OX=476139 GN=rpoC... [more]
Q3V5442.6e-2695.31DNA-directed RNA polymerase subunit beta'' OS=Acorus calamus OX=4465 GN=rpoC2 PE... [more]
A4QJA52.6e-2695.31DNA-directed RNA polymerase subunit beta'' OS=Aethionema cordifolium OX=434059 G... [more]
A4QJI92.6e-2695.31DNA-directed RNA polymerase subunit beta'' OS=Aethionema grandiflorum OX=72657 G... [more]
A4QK082.6e-2695.31DNA-directed RNA polymerase subunit beta'' OS=Arabis hirsuta OX=78191 GN=rpoC2 P... [more]
BLAST of CcUC01G008500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
F8TCX25.6e-2483.33DNA-directed RNA polymerase (Fragment) OS=Mammea americana OX=198777 GN=rpoC2 PE... [more]
A0A5J6KE947.3e-2495.31DNA-directed RNA polymerase OS=Hexalectris grandiflora OX=397655 GN=rpoC2 PE=3 S... [more]
A0A6H0E4Q47.3e-2495.31DNA-directed RNA polymerase OS=Amherstia nobilis OX=162646 GN=rpoC2 PE=3 SV=1[more]
A0A6B9TXX17.3e-2495.31DNA-directed RNA polymerase subunit beta'' OS=Anchomanes hookeri OX=2544931 GN=r... [more]
A0A2Z5WN179.5e-2495.31DNA-directed RNA polymerase subunit beta'' OS=Dendrobium tosaense OX=183483 GN=r... [more]
BLAST of CcUC01G008500 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00170.11.8e-2795.31DNA-directed RNA polymerase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038120RNA polymerase Rpb1, funnel domain superfamilyGENE3D1.10.132.30coord: 23..92
e-value: 3.3E-27
score: 97.2
IPR007083RNA polymerase Rpb1, domain 4PFAMPF05000RNA_pol_Rpb1_4coord: 28..51
e-value: 1.0E-5
score: 25.4
NoneNo IPR availablePANTHERPTHR19376:SF47DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''coord: 29..94
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 29..94
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 26..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC01G008500.1CcUC01G008500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0008270 zinc ion binding