CcUC01G006830 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC01G006830
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr01: 7251958 .. 7252191 (+)
RNA-Seq ExpressionCcUC01G006830
SyntenyCcUC01G006830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACGCGACGGCGACGGTGGCCAGCGATTCCGATTCTGACGTTTCTCAGCTTCCCATTCACAGCCAAGTTGAAAAGATCAAGAAGGAGATTCAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCCCTAGGGCTCGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA

mRNA sequence

ATGGAGAACGCGACGGCGACGGTGGCCAGCGATTCCGATTCTGACGTTTCTCAGCTTCCCATTCACAGCCAAGTTGAAAAGATCAAGAAGGAGATTCAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCCCTAGGGCTCGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA

Coding sequence (CDS)

ATGGAGAACGCGACGGCGACGGTGGCCAGCGATTCCGATTCTGACGTTTCTCAGCTTCCCATTCACAGCCAAGTTGAAAAGATCAAGAAGGAGATTCAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCCCTAGGGCTCGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA

Protein sequence

MENATATVASDSDSDVSQLPIHSQVEKIKKEIQKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN
Homology
BLAST of CcUC01G006830 vs. NCBI nr
Match: XP_038875254.1 (uncharacterized protein LOC120067758 [Benincasa hispida])

HSP 1 Score: 133.3 bits (334), Expect = 9.1e-28
Identity = 70/77 (90.91%), Postives = 72/77 (93.51%), Query Frame = 0

Query: 1  MENATATVASDSDSDVSQLPIHSQVEKIKKEIQKIKHPSLQQSEMNTHLLLRGISISKPR 60
          M N T T A DSDSDVSQLPIHSQV+KIKKEI+KIKHPSLQQSEMNTHLLLRGISISKPR
Sbjct: 1  MVNPTPTAAGDSDSDVSQLPIHSQVQKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPR 60

Query: 61 SRSPLGLAAERPISVGN 78
          SRSPLGLAAERPISVGN
Sbjct: 61 SRSPLGLAAERPISVGN 77

BLAST of CcUC01G006830 vs. NCBI nr
Match: XP_016903705.1 (PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo] >KAA0046371.1 uncharacterized protein E6C27_scaffold149G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 1.4e-23
Identity = 61/72 (84.72%), Postives = 68/72 (94.44%), Query Frame = 0

Query: 6  ATVASDSDSDVSQLPIHSQVEKIKKEIQKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 65
          +T A DSDS+VSQ+PIHSQVEKIKKEI+KIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  STAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 66 GLAAERPISVGN 78
          GL ++ PISVGN
Sbjct: 64 GLPSDTPISVGN 75

BLAST of CcUC01G006830 vs. NCBI nr
Match: XP_011655448.1 (uncharacterized protein LOC105435535 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 7.5e-22
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 0

Query: 6  ATVASDSDSDVSQLPIHSQVEKIKKEIQKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 65
          +  A DSDS+VS LPIHSQVEKIKKEI+KIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  SAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 66 GLAAERPISVGN 78
          GL ++  ISVGN
Sbjct: 64 GLPSDTSISVGN 75

BLAST of CcUC01G006830 vs. NCBI nr
Match: KAE8648597.1 (hypothetical protein Csa_008169, partial [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 5.4e-20
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 6  ATVASDSDSDVSQLPIHSQVEKIKKEIQKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 65
          +  A DSDS+VS LPIHSQVEKIKKEI+KIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  SAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 66 GLAAERPIS 75
          GL ++  IS
Sbjct: 64 GLPSDTSIS 72

BLAST of CcUC01G006830 vs. NCBI nr
Match: XP_022146403.1 (uncharacterized protein LOC111015628 [Momordica charantia])

HSP 1 Score: 106.7 bits (265), Expect = 9.2e-20
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 9  ASDSDSDVSQLPIHSQVEKIKKEIQKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLA 68
          A D DSD +Q+P+H QV KIK+EI+KIKHPSLQQSEM THLLLRGISISK RSRSPLGLA
Sbjct: 5  AGDGDSD-AQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPLGLA 64

Query: 69 AERPISVGN 78
          AERPISVGN
Sbjct: 65 AERPISVGN 72

BLAST of CcUC01G006830 vs. ExPASy TrEMBL
Match: A0A5A7TYE7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00850 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.6e-24
Identity = 61/72 (84.72%), Postives = 68/72 (94.44%), Query Frame = 0

Query: 6  ATVASDSDSDVSQLPIHSQVEKIKKEIQKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 65
          +T A DSDS+VSQ+PIHSQVEKIKKEI+KIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  STAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 66 GLAAERPISVGN 78
          GL ++ PISVGN
Sbjct: 64 GLPSDTPISVGN 75

BLAST of CcUC01G006830 vs. ExPASy TrEMBL
Match: A0A1S4E6T1 (uncharacterized protein LOC103504534 OS=Cucumis melo OX=3656 GN=LOC103504534 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.6e-24
Identity = 61/72 (84.72%), Postives = 68/72 (94.44%), Query Frame = 0

Query: 6  ATVASDSDSDVSQLPIHSQVEKIKKEIQKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 65
          +T A DSDS+VSQ+PIHSQVEKIKKEI+KIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  STAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 66 GLAAERPISVGN 78
          GL ++ PISVGN
Sbjct: 64 GLPSDTPISVGN 75

BLAST of CcUC01G006830 vs. ExPASy TrEMBL
Match: A0A0A0KPB9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G561250 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.6e-22
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 0

Query: 6  ATVASDSDSDVSQLPIHSQVEKIKKEIQKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 65
          +  A DSDS+VS LPIHSQVEKIKKEI+KIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  SAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 66 GLAAERPISVGN 78
          GL ++  ISVGN
Sbjct: 64 GLPSDTSISVGN 75

BLAST of CcUC01G006830 vs. ExPASy TrEMBL
Match: A0A6J1CYH4 (uncharacterized protein LOC111015628 OS=Momordica charantia OX=3673 GN=LOC111015628 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.4e-20
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 9  ASDSDSDVSQLPIHSQVEKIKKEIQKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLA 68
          A D DSD +Q+P+H QV KIK+EI+KIKHPSLQQSEM THLLLRGISISK RSRSPLGLA
Sbjct: 5  AGDGDSD-AQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPLGLA 64

Query: 69 AERPISVGN 78
          AERPISVGN
Sbjct: 65 AERPISVGN 72

BLAST of CcUC01G006830 vs. ExPASy TrEMBL
Match: A0A6J1E1V2 (uncharacterized protein LOC111430025 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430025 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.9e-18
Identity = 56/77 (72.73%), Postives = 63/77 (81.82%), Query Frame = 0

Query: 1  MENATATVASDSDSDVSQLPIHSQVEKIKKEIQKIKHPSLQQSEMNTHLLLRGISISKPR 60
          MEN+TA   +  D   SQ P+H QV KIK+EI+KIKHPSLQQSEM+THLLLR +SISKPR
Sbjct: 1  MENSTAVADAGLD---SQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPR 60

Query: 61 SRSPLGLAAERPISVGN 78
           RSPLGLAAER ISVGN
Sbjct: 61 PRSPLGLAAERSISVGN 74

BLAST of CcUC01G006830 vs. TAIR 10
Match: AT1G67920.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24600.1); Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-08
Identity = 37/57 (64.91%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 21 IHSQVEKIKKEIQKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN 78
          IHSQVEKIKKE +KI+ PSLQQ EM    +L  I   + RSRSPLGL  ER ISVGN
Sbjct: 15 IHSQVEKIKKEFEKIRQPSLQQPEMRR--VLSEIK-RRQRSRSPLGL-GERSISVGN 67

BLAST of CcUC01G006830 vs. TAIR 10
Match: AT1G24600.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67920.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 4.3e-07
Identity = 38/71 (53.52%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 9  ASDSDSDVSQLP-IHSQVEKIKKEIQKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGL 68
          A+  D     +P IHSQV KIK+E +KI+HPSL+Q EM   L+ R I +   RSRSPLGL
Sbjct: 5  ANHGDDVQESVPIIHSQVVKIKREFEKIQHPSLKQPEM--PLVFREI-MGPRRSRSPLGL 64

Query: 69 A-AERPISVGN 78
             ER I VGN
Sbjct: 65 GERERSIPVGN 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038875254.19.1e-2890.91uncharacterized protein LOC120067758 [Benincasa hispida][more]
XP_016903705.11.4e-2384.72PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo] >KAA0046371.1 unc... [more]
XP_011655448.17.5e-2281.94uncharacterized protein LOC105435535 [Cucumis sativus][more]
KAE8648597.15.4e-2081.16hypothetical protein Csa_008169, partial [Cucumis sativus][more]
XP_022146403.19.2e-2082.61uncharacterized protein LOC111015628 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TYE76.6e-2484.72Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S4E6T16.6e-2484.72uncharacterized protein LOC103504534 OS=Cucumis melo OX=3656 GN=LOC103504534 PE=... [more]
A0A0A0KPB93.6e-2281.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G561250 PE=4 SV=1[more]
A0A6J1CYH44.4e-2082.61uncharacterized protein LOC111015628 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A6J1E1V21.9e-1872.73uncharacterized protein LOC111430025 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
Match NameE-valueIdentityDescription
AT1G67920.11.3e-0864.91unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G24600.14.3e-0753.52unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..77
NoneNo IPR availablePANTHERPTHR34780:SF2BNAA07G38580D PROTEINcoord: 2..77
NoneNo IPR availablePANTHERPTHR34780OS08G0427800 PROTEINcoord: 2..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC01G006830.1CcUC01G006830.1mRNA