CcUC01G006630 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC01G006630
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic
Location	CicolChr01: 6947836 .. 6950330 (+)
RNA-Seq Expression	CcUC01G006630
Synteny	CcUC01G006630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTGCTCCCTTGGCCTTCACATCCCCAAGGCCTTGCCTTCTCTCTCCTCTTCCAAAACCCTTTTTCCTTCTCTCTCTTCTTCCTTTAAGCTTCACAATTTGAATTTGCCCTCCAATTCAAACCCCAACAATGTCTCTCTCTCCCTCTCTTTCATTCTCTGCTTCTCTCTCTCTCTACTTTCTCTCTCTAAACATTTTTTTTTCTCTGTTTTTGGGTGTAGTTTGAGATTGTGGGAAGCATCAGAGAAGATCCCATTGCCTATCTTCACCAACACAAAACTAGTTTGGCTCTTCAACTTGCAGCCCTTTTAGCCACTGTAAGCAACTTTCCTCCTTTTTATTTTCATCCATTGTTTTCTCATTCTAAACTACTTCTAATTAATAAAACCTTGCTTTAATATTATTCATTAGTTATGTTTTATAATTCCAGTTATAATGCATTTTCCCCTATAAACTTTGTTTTTCAACTTTAATTAGTATGGATTTAGTTTTAGGTAACAATTTAGTTTGTTTTAGTTTTTAACTTGAAAATTTTCTTTCAAATTAAATGTTACAAATTTCAGTAATATATTTTTTCTAATAACTACTAAATTAAATTGTTGTTTATTTAAGTTTAAAATAATTAAATTGTTACAAATTTGAAAGTATTTGATGGTTGAATTTTATATATTTGATTTGTTGAATTTATATGGCTGAATTTTGAAAATGGTAACATTCAAAGCCTTTTAAGTTAATGATTGTATTTATTTAATCATTTTAGCTAAGTCAAGTTGGACCAAGAATGTTGGTCATGTTTCTTTTAGAATTTGCAATTGCTTTGTCGCTCACCCTCTAATATGGGTTCGAATTTTTGTTTCTCAAAACTGTTCGAATTTTTGTTTCTCAAAACTTTTCTAATCATGCGAAAGGTAGGGCGCGTAGGATGTCTATTGGAAGGCTGATTATTCTAGTTGGGTGTCCTCTAAACTTGTTAGTTGTTTCTTTAATGAAGTTATTTAAAATAAAATATTGGAAATTCACTGGTTCAAACATTTGTAACATTCTTATAATTTGTGAAGAAATTGAAGAGGTTAAAGTGAAAATTTGGTTAATTAACTATTGGATTTGAAATAACAGGTTGGGGAGGCAGCAAATGCAGTAACAGGAGACAACAACCATGAAGTTCCACTAACATGGATTTTGACACAATTGGGCATTGTTGGATTCTTCTACTTTCTTATCTTTCCTGTAAGAATATAGTTAAATTTTGCCAAATTCTTTCTCTAAAGTTACGAAGGAACGAATTAAGTTGATTTCAAAAGGGAGTATTTTATTTTATGGCAGCCAATCATCATGAACTGGCTGAGGATAAGATGGTATAGAAGAAACTTGTTGGAAATGTACCTCCAATTCATGTGTGTCTTCCTCTTCTTCCCTGGGTAAGGACTTAGATTTTGATACTGTTAAAATCATTTTTGTCATGTTCTAAATCACTCTTAAATATGTGGTTAAAGTCTATAATTAAAACATTATATAGATTGTTAATACCTAAATTTGGTATCAATGGTGAATTTAAAATATTAGGGAGAGAATGGAATGGGTGTCTTGCAATACAAAAAGATCTAACACTTATGTGGTATTTAGGCACCAACACTTCGATGATAATTAAGTCAGTGACATTATTTCTAGATAGCTAAGAGAGTAGAGAGAGCTCGAAGTATATTTTGAATTTTTTTAGTATACTTTGAAATGTATAACATGCTCTCTTATCATTATCAAGAAATATTGTTTCATGATAGTTGTCCATCACTAATTAGCTTTTCAGACTATTAATTAAACTGTTACTAACCATTATATAACAAGTTGTCTAGATAATCTTATTTGCAAATCTAAGTACACACAACTGACTCAAGGAATAAACACTTATACTTGATTAATTTTCTCTTTCATGACCAACTCTATTGGTCAGCCTCCACAAGGGCTCACAGGAGGAAGTTTCAGGGGTTGGCCATCTCCTCTCTCACAATTGACCAATAGACGTGTGGGCCATCGTGGCCCGACCTTATGGGTTGGGTCACACTACCTCTAGGGTCGATCTCTCCTTATGGTTTTTTTCGACCTTATGTATCGGCATCTTTGTCCATCAAAGCTGGCCTCTCTTAGTTATAACTCTTCCCTTCTAATGGTCAATGGTCAACTGTTAGGGTGGCTTACTTAGCTTAATTTTTTGCTCGTATATTAATTTTGAATGATTAAAAATATGTTTACAAGTGATTTTGACTATTACCAAAATCAGTTTCGAACAGAACATATTGTGAATCATACATAAATGTTAAGAGTTGTTGTTAGTTGAATTTTGCAGGATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTTCCACGAGATCCATCGATGAAGTATCCATGGTCGACACCGGAAGAGCCATCTCAGATAAAAAATGCATACTTGAAGTACCCATTTGCTAAGCCTGAAGATTATGACTGGTAA

mRNA sequence

ATGAACTGCTCCCTTGGCCTTCACATCCCCAAGGCCTTGCCTTCTCTCTCCTCTTCCAAAACCCTTTTTCCTTCTCTCTCTTCTTCCTTTAAGCTTCACAATTTGAATTTGCCCTCCAATTCAAACCCCAACAATTTTGAGATTGTGGGAAGCATCAGAGAAGATCCCATTGCCTATCTTCACCAACACAAAACTAGTTTGGCTCTTCAACTTGCAGCCCTTTTAGCCACTGTTGGGGAGGCAGCAAATGCAGTAACAGGAGACAACAACCATGAAGTTCCACTAACATGGATTTTGACACAATTGGGCATTGTTGGATTCTTCTACTTTCTTATCTTTCCTCCAATCATCATGAACTGGCTGAGGATAAGATGGTATAGAAGAAACTTGTTGGAAATGTACCTCCAATTCATGTGTGTCTTCCTCTTCTTCCCTGGGATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTTCCACGAGATCCATCGATGAAGTATCCATGGTCGACACCGGAAGAGCCATCTCAGATAAAAAATGCATACTTGAAGTACCCATTTGCTAAGCCTGAAGATTATGACTGGTAA

Coding sequence (CDS)

ATGAACTGCTCCCTTGGCCTTCACATCCCCAAGGCCTTGCCTTCTCTCTCCTCTTCCAAAACCCTTTTTCCTTCTCTCTCTTCTTCCTTTAAGCTTCACAATTTGAATTTGCCCTCCAATTCAAACCCCAACAATTTTGAGATTGTGGGAAGCATCAGAGAAGATCCCATTGCCTATCTTCACCAACACAAAACTAGTTTGGCTCTTCAACTTGCAGCCCTTTTAGCCACTGTTGGGGAGGCAGCAAATGCAGTAACAGGAGACAACAACCATGAAGTTCCACTAACATGGATTTTGACACAATTGGGCATTGTTGGATTCTTCTACTTTCTTATCTTTCCTCCAATCATCATGAACTGGCTGAGGATAAGATGGTATAGAAGAAACTTGTTGGAAATGTACCTCCAATTCATGTGTGTCTTCCTCTTCTTCCCTGGGATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTTCCACGAGATCCATCGATGAAGTATCCATGGTCGACACCGGAAGAGCCATCTCAGATAAAAAATGCATACTTGAAGTACCCATTTGCTAAGCCTGAAGATTATGACTGGTAA

Protein sequence

MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYLHQHKTSLALQLAALLATVGEAANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW

Homology

[Close]

BLAST of CcUC01G006630 vs. NCBI nr
Match: XP_038875378.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Benincasa hispida])

HSP 1 Score: 379.0 bits (972), Expect = 2.4e-101
Identity = 182/195 (93.33%), Postives = 189/195 (96.92%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNS   NFE+VGSI+EDP+ YL
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSKLKNFEVVGSIKEDPVGYL 60

Query: 61  HQHKTSLALQLAALLATVGEAANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
           HQ KTSLALQLAA+LATVGEAANAVTG+NNHEVPLTWIL QLGIVGFFYFL+FPPIIMNW
Sbjct: 61  HQKKTSLALQLAAILATVGEAANAVTGENNHEVPLTWILAQLGIVGFFYFLVFPPIIMNW 120

Query: 121 LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 180
           LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTP+EPSQIKN
Sbjct: 121 LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKN 180

Query: 181 AYLKYPFAKPEDYDW 196
           AYLKYPFAKPEDYDW
Sbjct: 181 AYLKYPFAKPEDYDW 195

[Close]

BLAST of CcUC01G006630 vs. NCBI nr
Match: KAA0046329.1 (NAD(P)H-quinone oxidoreductase subunit L [Cucumis melo var. makuwa] >TYK30492.1 NAD(P)H-quinone oxidoreductase subunit L [Cucumis melo var. makuwa])

HSP 1 Score: 351.7 bits (901), Expect = 4.1e-93
Identity = 174/196 (88.78%), Postives = 183/196 (93.37%), Query Frame = 0


Query: 3   CSLG-LHIPKALPSLSSSKTLFPSLSSSFKLHNLN-LPSNSNPNNFEIVGSIR-EDPIAY 62
           C +G LHIPKALPSLSSSKTLFPSLSS FKLHNLN LPSNSNP NFEIVGSI+ EDPI Y
Sbjct: 4   CGIGLLHIPKALPSLSSSKTLFPSLSSPFKLHNLNILPSNSNPKNFEIVGSIKEEDPIGY 63

Query: 63  LHQHKTSLALQLAALLATVGEAANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMN 122
           L + KTSLALQLAA LATVGE A+AVTGDNNHEVPLTW+L QLG VGFFYFL+FPPIIMN
Sbjct: 64  LDKKKTSLALQLAAFLATVGEPASAVTGDNNHEVPLTWVLAQLGFVGFFYFLVFPPIIMN 123

Query: 123 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIK 182
           WLRIRWYRRNLLEMY+QFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTP++PSQIK
Sbjct: 124 WLRIRWYRRNLLEMYIQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSQIK 183

Query: 183 NAYLKYPFAKPEDYDW 196
           NAYLKYPFAKPEDYDW
Sbjct: 184 NAYLKYPFAKPEDYDW 199

[Close]

BLAST of CcUC01G006630 vs. NCBI nr
Match: XP_004150114.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Cucumis sativus])

HSP 1 Score: 347.8 bits (891), Expect = 6.0e-92
Identity = 170/196 (86.73%), Postives = 183/196 (93.37%), Query Frame = 0


Query: 3   CSLG-LHIPKALPSLSSSKTLFPSLSSSFKLHNLN-LPSNSNPNNFEIVGSIR-EDPIAY 62
           CS+G LHIPKALPSLSSSKTLFPSL S FKLHN N LPSNSNP NF+IVGSI+ EDPI Y
Sbjct: 6   CSIGLLHIPKALPSLSSSKTLFPSLYSPFKLHNFNILPSNSNPKNFKIVGSIKEEDPIGY 65

Query: 63  LHQHKTSLALQLAALLATVGEAANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMN 122
           LH+ KTSLAL LAA LATVGE A+AVTG+NNHEVPLTW+L QLG++GFFYFL+FPPIIMN
Sbjct: 66  LHKKKTSLALHLAAFLATVGEPASAVTGENNHEVPLTWVLAQLGVIGFFYFLVFPPIIMN 125

Query: 123 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIK 182
           WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTP++PS+IK
Sbjct: 126 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSKIK 185

Query: 183 NAYLKYPFAKPEDYDW 196
           NAYLKYPFAKPEDYDW
Sbjct: 186 NAYLKYPFAKPEDYDW 201

[Close]

BLAST of CcUC01G006630 vs. NCBI nr
Match: KAE8648604.1 (hypothetical protein Csa_008632 [Cucumis sativus])

HSP 1 Score: 343.6 bits (880), Expect = 1.1e-90
Identity = 169/195 (86.67%), Postives = 182/195 (93.33%), Query Frame = 0


Query: 3   CSLG-LHIPKALPSLSSSKTLFPSLSSSFKLHNLN-LPSNSNPNNFEIVGSIR-EDPIAY 62
           CS+G LHIPKALPSLSSSKTLFPSL S FKLHN N LPSNSNP NF+IVGSI+ EDPI Y
Sbjct: 6   CSIGLLHIPKALPSLSSSKTLFPSLYSPFKLHNFNILPSNSNPKNFKIVGSIKEEDPIGY 65

Query: 63  LHQHKTSLALQLAALLATVGEAANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMN 122
           LH+ KTSLAL LAA LATVGE A+AVTG+NNHEVPLTW+L QLG++GFFYFL+FPPIIMN
Sbjct: 66  LHKKKTSLALHLAAFLATVGEPASAVTGENNHEVPLTWVLAQLGVIGFFYFLVFPPIIMN 125

Query: 123 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIK 182
           WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTP++PS+IK
Sbjct: 126 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSKIK 185

Query: 183 NAYLKYPFAKPEDYD 195
           NAYLKYPFAKPEDYD
Sbjct: 186 NAYLKYPFAKPEDYD 200

[Close]

BLAST of CcUC01G006630 vs. NCBI nr
Match: XP_023527074.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337.0 bits (863), Expect = 1.1e-88
Identity = 166/195 (85.13%), Postives = 175/195 (89.74%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           MNCSLGLHIPKALPSLSSSKT+ P LS+ FKL  L LPS     NF++V SIREDPIA+L
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKL--LKLPSKPTSINFQVVASIREDPIAFL 60

Query: 61  HQHKTSLALQLAALLATVGEAANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
            Q KTSL+LQ AALLATV E A AVTGDNNHEVPLTWILTQLGIVGFFYFL+FPPIIMNW
Sbjct: 61  RQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNW 120

Query: 121 LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 180
           LRIRWYRRNLLEMY+QFMCVFL FPGILLWAPFLNFRKFPRDPSMKYPWSTP+EPSQIKN
Sbjct: 121 LRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKN 180

Query: 181 AYLKYPFAKPEDYDW 196
            YLKYPFAKPEDYDW
Sbjct: 181 GYLKYPFAKPEDYDW 193

[Close]

BLAST of CcUC01G006630 vs. ExPASy Swiss-Prot
Match: Q9CAC5 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhL PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 5.0e-49
Identity = 104/191 (54.45%), Postives = 130/191 (68.06%), Query Frame = 0


Query: 4   SLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYLHQH 63
           SLGL+ P ALPSLS       S+ S F + +   P+++  +N   V  +R      L   
Sbjct: 6   SLGLYAPNALPSLSLKPR---SVKSPFCITSHTKPNDTLLHN---VNKMRAKACDILGAK 65

Query: 64  KTSLALQLAALLATVGEAANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNWLRI 123
           KT LA QL A+LAT+   A A+TG NN +  L+ ++  +GI+  +YFL+ PPIIMNWLR+
Sbjct: 66  KTILAAQLGAVLATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRV 125

Query: 124 RWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYL 183
           RWYRR   EMYLQFM VF+FFPG+LLWAPFLNFRKFPRDP+MK PW  P +P  IKN YL
Sbjct: 126 RWYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNVYL 185

Query: 184 KYPFAKPEDYD 195
           KYP+A PEDYD
Sbjct: 186 KYPYATPEDYD 189

[Close]

BLAST of CcUC01G006630 vs. ExPASy Swiss-Prot
Match: Q7U620 (NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain WH8102) OX=84588 GN=ndhL PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-05
Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 98  ILTQLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFR 157
           ++    ++G  Y L+ P  +  W+  RW R   +E  L +  VFLFFPG++++APFLNFR
Sbjct: 17  VILAYALLGGLYLLVVPLALFFWMNSRWTRMGKIERLLVYGLVFLFFPGMVVFAPFLNFR 76

[Close]

BLAST of CcUC01G006630 vs. ExPASy Swiss-Prot
Match: Q10W93 (NAD(P)H-quinone oxidoreductase subunit L OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=ndhL PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.5e-05
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 109 YFLIFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFR 158
           YFL+ P I+  +L+ RWY  + +E    +  +FLFFPG+L+ +PFLNFR
Sbjct: 22  YFLVMPAIVYAYLKTRWYVVSSIERVFMYFLMFLFFPGMLVLSPFLNFR 70

[Close]

BLAST of CcUC01G006630 vs. ExPASy Swiss-Prot
Match: B0C6G0 (NAD(P)H-quinone oxidoreductase subunit L OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=ndhL PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.4e-05
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 98  ILTQLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFR 157
           ++  LG++G  Y L+ P I   +L+ RWY  + LE    +  VF FFP +LL +PFLNFR
Sbjct: 5   LILLLGLLG-GYLLVMPAITYFYLQKRWYVASSLERGFMYFLVFFFFPSLLLLSPFLNFR 64

Query: 158 KFPR 162
             PR
Sbjct: 65  PQPR 67

[Close]

BLAST of CcUC01G006630 vs. ExPASy Swiss-Prot
Match: Q8DKZ3 (NAD(P)H-quinone oxidoreductase subunit L OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=ndhL PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.4e-05
Identity = 26/64 (40.62%), Postives = 35/64 (54.69%), Query Frame = 0


Query: 98  ILTQLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFR 157
           +L   G +   Y L+ P I+  +L  RWY  +  E    +  V  FFPG+LL APF+NFR
Sbjct: 9   VLGVYGALAGLYLLVVPAIVYAYLNARWYVASSFERAFMYFLVTFFFPGLLLLAPFINFR 68

Query: 158 KFPR 162
             PR
Sbjct: 69  PQPR 72

[Close]

BLAST of CcUC01G006630 vs. ExPASy TrEMBL
Match: A0A5D3E3M5 (NAD(P)H-quinone oxidoreductase subunit L OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00350 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.0e-93
Identity = 174/196 (88.78%), Postives = 183/196 (93.37%), Query Frame = 0


Query: 3   CSLG-LHIPKALPSLSSSKTLFPSLSSSFKLHNLN-LPSNSNPNNFEIVGSIR-EDPIAY 62
           C +G LHIPKALPSLSSSKTLFPSLSS FKLHNLN LPSNSNP NFEIVGSI+ EDPI Y
Sbjct: 4   CGIGLLHIPKALPSLSSSKTLFPSLSSPFKLHNLNILPSNSNPKNFEIVGSIKEEDPIGY 63

Query: 63  LHQHKTSLALQLAALLATVGEAANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMN 122
           L + KTSLALQLAA LATVGE A+AVTGDNNHEVPLTW+L QLG VGFFYFL+FPPIIMN
Sbjct: 64  LDKKKTSLALQLAAFLATVGEPASAVTGDNNHEVPLTWVLAQLGFVGFFYFLVFPPIIMN 123

Query: 123 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIK 182
           WLRIRWYRRNLLEMY+QFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTP++PSQIK
Sbjct: 124 WLRIRWYRRNLLEMYIQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSQIK 183

Query: 183 NAYLKYPFAKPEDYDW 196
           NAYLKYPFAKPEDYDW
Sbjct: 184 NAYLKYPFAKPEDYDW 199

[Close]

BLAST of CcUC01G006630 vs. ExPASy TrEMBL
Match: A0A0A0KSV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G569340 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.9e-92
Identity = 170/196 (86.73%), Postives = 183/196 (93.37%), Query Frame = 0


Query: 3   CSLG-LHIPKALPSLSSSKTLFPSLSSSFKLHNLN-LPSNSNPNNFEIVGSIR-EDPIAY 62
           CS+G LHIPKALPSLSSSKTLFPSL S FKLHN N LPSNSNP NF+IVGSI+ EDPI Y
Sbjct: 6   CSIGLLHIPKALPSLSSSKTLFPSLYSPFKLHNFNILPSNSNPKNFKIVGSIKEEDPIGY 65

Query: 63  LHQHKTSLALQLAALLATVGEAANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMN 122
           LH+ KTSLAL LAA LATVGE A+AVTG+NNHEVPLTW+L QLG++GFFYFL+FPPIIMN
Sbjct: 66  LHKKKTSLALHLAAFLATVGEPASAVTGENNHEVPLTWVLAQLGVIGFFYFLVFPPIIMN 125

Query: 123 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIK 182
           WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTP++PS+IK
Sbjct: 126 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSKIK 185

Query: 183 NAYLKYPFAKPEDYDW 196
           NAYLKYPFAKPEDYDW
Sbjct: 186 NAYLKYPFAKPEDYDW 201

[Close]

BLAST of CcUC01G006630 vs. ExPASy TrEMBL
Match: A0A6J1GNR4 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456098 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.3e-88
Identity = 164/195 (84.10%), Postives = 174/195 (89.23%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           MNCSLGLHIPKALPSLSSSKT+ P LS+ FKL  L LPSN    +F++V  IREDPI +L
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKL--LKLPSNPTSISFQVVACIREDPIGFL 60

Query: 61  HQHKTSLALQLAALLATVGEAANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
            Q KTSL+LQ AALLATV E A AVTGDNNHEVPLTWILTQLGIVGFFYFL+FPPIIMNW
Sbjct: 61  RQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNW 120

Query: 121 LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 180
           LRIRWYRRNLLEMY+QFMCVFL FPGILLWAPFLNFRKFPRDPSMKYPWSTP+EPSQIKN
Sbjct: 121 LRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKN 180

Query: 181 AYLKYPFAKPEDYDW 196
            YLKYPFAKPEDYDW
Sbjct: 181 GYLKYPFAKPEDYDW 193

[Close]

BLAST of CcUC01G006630 vs. ExPASy TrEMBL
Match: A0A6J1GQ77 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456098 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.7e-87
Identity = 164/195 (84.10%), Postives = 173/195 (88.72%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           MNCSLGLHIPKALPSLSSSKT+ P LS+ FKL  L LP  SNP +  +V  IREDPI +L
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKL--LKLP--SNPTSISVVACIREDPIGFL 60

Query: 61  HQHKTSLALQLAALLATVGEAANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
            Q KTSL+LQ AALLATV E A AVTGDNNHEVPLTWILTQLGIVGFFYFL+FPPIIMNW
Sbjct: 61  RQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNW 120

Query: 121 LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 180
           LRIRWYRRNLLEMY+QFMCVFL FPGILLWAPFLNFRKFPRDPSMKYPWSTP+EPSQIKN
Sbjct: 121 LRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKN 180

Query: 181 AYLKYPFAKPEDYDW 196
            YLKYPFAKPEDYDW
Sbjct: 181 GYLKYPFAKPEDYDW 191

[Close]

BLAST of CcUC01G006630 vs. ExPASy TrEMBL
Match: A0A6J1DYB3 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111025670 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.4e-86
Identity = 162/197 (82.23%), Postives = 175/197 (88.83%), Query Frame = 0


Query: 1   MNC--SLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIA 60
           M C   LGLHIP+ALPSLSSS++LFPSLSS  KL    LPSNS PNN   V SI EDPIA
Sbjct: 3   MRCCLGLGLHIPRALPSLSSSQSLFPSLSSISKLQ--KLPSNSTPNNKNAVASISEDPIA 62

Query: 61  YLHQHKTSLALQLAALLATVGEAANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIM 120
            +HQ K SLA Q+AALLAT+GE ANAVTGDNNHEVPL+WILTQLGIVGFFYFL+FPPIIM
Sbjct: 63  NVHQKKPSLAFQVAALLATIGEPANAVTGDNNHEVPLSWILTQLGIVGFFYFLVFPPIIM 122

Query: 121 NWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQI 180
           NWLRIRWYRRNLLEMYLQFMCVFLFFPGIL+WAPFLNFRK PRDPS+KYPW+TPE+PSQ+
Sbjct: 123 NWLRIRWYRRNLLEMYLQFMCVFLFFPGILVWAPFLNFRKLPRDPSLKYPWATPEDPSQV 182

Query: 181 KNAYLKYPFAKPEDYDW 196
           KNAYLKYPFAKPEDYDW
Sbjct: 183 KNAYLKYPFAKPEDYDW 197

[Close]

BLAST of CcUC01G006630 vs. TAIR 10
Match: AT1G70760.1 (inorganic carbon transport protein-related )

HSP 1 Score: 195.7 bits (496), Expect = 3.5e-50
Identity = 104/191 (54.45%), Postives = 130/191 (68.06%), Query Frame = 0


Query: 4   SLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYLHQH 63
           SLGL+ P ALPSLS       S+ S F + +   P+++  +N   V  +R      L   
Sbjct: 6   SLGLYAPNALPSLSLKPR---SVKSPFCITSHTKPNDTLLHN---VNKMRAKACDILGAK 65

Query: 64  KTSLALQLAALLATVGEAANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNWLRI 123
           KT LA QL A+LAT+   A A+TG NN +  L+ ++  +GI+  +YFL+ PPIIMNWLR+
Sbjct: 66  KTILAAQLGAVLATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRV 125

Query: 124 RWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYL 183
           RWYRR   EMYLQFM VF+FFPG+LLWAPFLNFRKFPRDP+MK PW  P +P  IKN YL
Sbjct: 126 RWYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNVYL 185

Query: 184 KYPFAKPEDYD 195
           KYP+A PEDYD
Sbjct: 186 KYPYATPEDYD 189

The following BLAST results are available for this feature:

BLAST of CcUC01G006630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875378.1	2.4e-101	93.33	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Benincasa hispida]	[more]
KAA0046329.1	4.1e-93	88.78	NAD(P)H-quinone oxidoreductase subunit L [Cucumis melo var. makuwa] >TYK30492.1 ...	[more]
XP_004150114.1	6.0e-92	86.73	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Cucumis sativus]	[more]
KAE8648604.1	1.1e-90	86.67	hypothetical protein Csa_008632 [Cucumis sativus]	[more]
XP_023527074.1	1.1e-88	85.13	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita pe...	[more]

BLAST of CcUC01G006630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAC5	5.0e-49	54.45	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q7U620	1.2e-05	40.00	NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain WH8102) OX...	[more]
Q10W93	1.5e-05	46.94	NAD(P)H-quinone oxidoreductase subunit L OS=Trichodesmium erythraeum (strain IMS...	[more]
B0C6G0	3.4e-05	43.75	NAD(P)H-quinone oxidoreductase subunit L OS=Acaryochloris marina (strain MBIC 11...	[more]
Q8DKZ3	3.4e-05	40.63	NAD(P)H-quinone oxidoreductase subunit L OS=Thermosynechococcus elongatus (strai...	[more]

BLAST of CcUC01G006630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E3M5	2.0e-93	88.78	NAD(P)H-quinone oxidoreductase subunit L OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0KSV9	2.9e-92	86.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G569340 PE=4 SV=1	[more]
A0A6J1GNR4	4.3e-88	84.10	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 OS=Cucurbita ...	[more]
A0A6J1GQ77	3.7e-87	84.10	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 OS=Cucurbita ...	[more]
A0A6J1DYB3	1.4e-86	82.23	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 OS=Momordica ...	[more]

BLAST of CcUC01G006630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70760.1	3.5e-50	54.45	inorganic carbon transport protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019654	NAD(P)H-quinone oxidoreductase subunit L	PFAM	PF10716	NdhL	coord: 90..162 e-value: 3.8E-29 score: 100.5
None	No IPR available	PANTHER	PTHR36727	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT L, CHLOROPLASTIC	coord: 1..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC01G006630.1	CcUC01G006630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010258	NADH dehydrogenase complex (plastoquinone) assembly
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0048038	quinone binding