CcUC01G005640 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC01G005640
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Ycf20-like protein isoform X1
Location	CicolChr01: 5680270 .. 5682711 (-)
RNA-Seq Expression	CcUC01G005640
Synteny	CcUC01G005640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTCCAGGGTTTAAATTGATACATTTATGAAACATTCGTGTTTAAAGATTAAATTACCTTAAATTTGAAAATATAGAGACTAAAACAATTATCAACTAAAGTTTAGAAAAATTATTATAAATAAAAAAACACCAAATTATTTACAAATATAGAAAAACTTTATTGTCTATTTGTGATAGATCGCGATAGACATTCATCGCTTGAACGTTAGATATTCATCATCGTCTATCGTTGATAGATAATAAAATTTTTATATATTTATAAATAATTTGACTTGAAAACAATGCAAAAGTTTAGTTATTTTGACCCGGGAACAAAAATGTTCTTTAACCAACATTTTTTTCAAAAATATTTTGGGTCAAAATAGCAATTTCTCGCAAGTACAAGTTCTCTTACATTTTCTAATCTCAATTTCCAAATTCGTGATTCTCTTTGCTCCGTAAGAAGCACTTCTCTTGCTCCTCACTCCCAAAGCAGAACCTGGAATCGATTTCAAGGTATTAATTTTCCCTTAATTTTCTCTCATTTTCCATTCATTTTTGTTGAGGGCTCTTCAATTTTTTCAATCCTACCGCGACCGAAACAATTCTTCAAGAACATTGATTTTCATGTTTTATAGTCTTAATTTTGCTTAATTGCTCCCTGTTTGGCTTCCGAGAATAACGAGAAGTAGATTTGTTTCAAATGAACTTAAAATCTCTCCCAATTTCTAACCCCTGCTGTTTTGTTCCAGTCATTTTCTATGAATTTTGTTAAGATTTTAACCTTTGTTATCTTTGTTTGAGGGAATTTTTGTTCTCTCTAGTAAATCTCAGCTTAAGTTTAGTGGAAAGGTGCATATTGTTTCTTGAAATTGAATGTATATGTTTGCTGCTTATTGCTGTTATTGTTCAACGTCAAATTAGAACTCCAATCCTCTGTTTTCTTATTCAAATCCCTCTTCAGATTATAGGCATTGATCGATTTATTCTGACTAAAACAGCTTTTTTGCACTATTTAATCATGATTGGCCTTGTCGGAAGTTTTGGGGCATTTATTTTTTTTTCAAAATTTCAGCCTTTGTATTCTATTCTATGTAAAAGTGTCTCATCAATTTTATATTGCCTTAAGCAAAATATGCTTTGATGATCTCAGGTTCGCAACATTTTATTCAGCCCATATAGGAACTGAAACTTTGAATGGCACATTCTGCAAGTTTAGTCCACACTGGCCTCCTAAATTATGGGTTTACTCCCAAAATGAATCCTTCTTATTGGAGATATGATATGGTTAAATCACGACCATCCCCTCGTAGTGTTCATATCAAAGCTGTGCAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCCGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCGAGGAGGGCGCTTTTCGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAGTATGTTACTCGATTTTATTATAGTCGACCGAAAGTAACTTTCCCCATTGCTCTGTTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAAAAGCATTTGGTAACACCGTTCTGGTCGTAGCTAGCATTTACATTTGTAAAGCTCTTTGAACAATAATTTTGGTCTGTATCTTTAAAGCTTGTTCTAATTGTTTTAGATGAACTATTTTCCCCTCTTTATTTGTTTCTTCTGTATATTTTCATCTTACAGTTTACGTTGAAGAATTAAATGTTCTATTCACCTTCAGATGCAATATAGCAACAGTTTTGAATGTAATTGATACCTTTTAAGACTTTAGTTCTTGTTCATATATGAAATGCATCCCTGTCAATGGAGAATTGTTTGATTGAACTGCTTCTTTTCGAGAGCTGTTATGGGATAAATGTTGTACTTGTGCAATTTGTTGGTTTTCTATAGGAGTTACAGAATTGAAAGAGTAGTATTAAATAGATGAAAATGTGGTATATTATGGAATGAAGTCACTATAATGTAGCTGCTCTTCTCAACAAATTCGTAGTTAATGATAATTACACCCTTCCTCTATGTAATGATATTTCTATCCTCTACCCAACAGACTACTTAGAGCATAGTTAAACCTATTTTTTCGATGAGTATACTTTAGGCATATATGTTTTGATCGACCAAGAGATCGGAGATGCGAATCCTCCGACTCCTGATGTCGTTGAACTCAAACTTCTACCCTAATAGTATTCCTTTCTAACGGTCTTTATCCCTTTCAAAGATTGTACAAGGGATAAAAATTTGGGTGTTGGCCATGAATACAAGGAGGCAAATTCTGAAATATTAGCAGCATTAATCTTCATTACTAATGATTAAAGTAC

mRNA sequence

ATGAAACAATTTCTCGCAAGTACAAGTTCTCTTACATTTTCTAATCTCAATTTCCAAATTCGTGATTCTCTTTGCTCCGTAAGAAGCACTTCTCTTGCTCCTCACTCCCAAAGCAGAACCTGGAATCGATTTCAAGTCCACACTGGCCTCCTAAATTATGGGTTTACTCCCAAAATGAATCCTTCTTATTGGAGATATGATATGGTTAAATCACGACCATCCCCTCGTAGTGTTCATATCAAAGCTGTGCAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCCGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCGAGGAGGGCGCTTTTCGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAGTATGTTACTCGATTTTATTATAGTCGACCGAAAGTAACTTTCCCCATTGCTCTGTTAAACAACTTCAAAATGGGATTCACTTATGGCATATATGTTTTGATCGACCAAGAGATCGGAGATGCGAATCCTCCGACTCCTGATGTCGTTGAACTCAAACTTCTACCCTAATAGTATTCCTTTCTAACGGTCTTTATCCCTTTCAAAGATTGTACAAGGGATAAAAATTTGGGTGTTGGCCATGAATACAAGGAGGCAAATTCTGAAATATTAGCAGCATTAATCTTCATTACTAATGATTAAAGTAC

Coding sequence (CDS)

ATGAAACAATTTCTCGCAAGTACAAGTTCTCTTACATTTTCTAATCTCAATTTCCAAATTCGTGATTCTCTTTGCTCCGTAAGAAGCACTTCTCTTGCTCCTCACTCCCAAAGCAGAACCTGGAATCGATTTCAAGTCCACACTGGCCTCCTAAATTATGGGTTTACTCCCAAAATGAATCCTTCTTATTGGAGATATGATATGGTTAAATCACGACCATCCCCTCGTAGTGTTCATATCAAAGCTGTGCAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCCGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCGAGGAGGGCGCTTTTCGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAGTATGTTACTCGATTTTATTATAGTCGACCGAAAGTAACTTTCCCCATTGCTCTGTTAAACAACTTCAAAATGGGATTCACTTATGGCATATATGTTTTGATCGACCAAGAGATCGGAGATGCGAATCCTCCGACTCCTGATGTCGTTGAACTCAAACTTCTACCCTAA

Protein sequence

MKQFLASTSSLTFSNLNFQIRDSLCSVRSTSLAPHSQSRTWNRFQVHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVHIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYVLIDQEIGDANPPTPDVVELKLLP

Homology

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BLAST of CcUC01G005640 vs. NCBI nr
Match: KAG7017120.1 (putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282.7 bits (722), Expect = 2.5e-72
Identity = 138/158 (87.34%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 29  STSLAPHSQSRTWNRFQVHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVHIKAVQDTGG 88
           S+S   HSQS TWNR  V TGLLNY FTP+ N SYWRYDM+KSRPSPRS+ IKAVQDTGG
Sbjct: 90  SSSPVLHSQSGTWNRIVVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGG 149

Query: 89  PRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVV 148
           PRRLVDIIRLVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVV
Sbjct: 150 PRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVV 209

Query: 149 CVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV 187
           CVLLTEYVTRFYYSRPKVTFP+ALLNNFKMGFTYG+++
Sbjct: 210 CVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFI 247

[Close]

BLAST of CcUC01G005640 vs. NCBI nr
Match: XP_004143642.1 (uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypothetical protein Csa_000018 [Cucumis sativus])

HSP 1 Score: 272.3 bits (695), Expect = 3.4e-69
Identity = 134/142 (94.37%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 46  VHTGLLNYGFTPKMNPSYWRYDMVKSRPS-PRSVHIKAVQDTGGPRRLVDIIRLVPELSR 105
           VHT LLNYGFTPKMNPSYWRYDMVKSRPS PRS  +KAVQDTGGPRRLVDIIRLVPELSR
Sbjct: 8   VHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIRLVPELSR 67

Query: 106 NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP 165
           NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP
Sbjct: 68  NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP 127

Query: 166 KVTFPIALLNNFKMGFTYGIYV 187
           KVTFPIALLNNFKMGFTYG+++
Sbjct: 128 KVTFPIALLNNFKMGFTYGLFI 149

[Close]

BLAST of CcUC01G005640 vs. NCBI nr
Match: XP_008467245.1 (PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo])

HSP 1 Score: 266.2 bits (679), Expect = 2.5e-67
Identity = 132/142 (92.96%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 46  VHTGLLNYGFTPKMNPSYWRYDMVKSRPS-PRSVHIKAVQDTGGPRRLVDIIRLVPELSR 105
           VHTGLLNYGF+ KMN SYWRYDMVKSRPS PRS  +KAVQDTGGPRRLVDIIRLVPELSR
Sbjct: 8   VHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIRLVPELSR 67

Query: 106 NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP 165
           NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP
Sbjct: 68  NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP 127

Query: 166 KVTFPIALLNNFKMGFTYGIYV 187
           KVTFPIALLNNFKMGFTYG+++
Sbjct: 128 KVTFPIALLNNFKMGFTYGLFI 149

[Close]

BLAST of CcUC01G005640 vs. NCBI nr
Match: KAG6579671.1 (hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 265.0 bits (676), Expect = 5.5e-67
Identity = 128/141 (90.78%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 46  VHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVHIKAVQDTGGPRRLVDIIRLVPELSRN 105
           V TGLLNY FTP+ N SYWRYDM+KSRPSPRS+ IKAVQDTGGPRRLVDIIRLVPE+SRN
Sbjct: 8   VSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRN 67

Query: 106 YFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK 165
           YFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK
Sbjct: 68  YFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK 127

Query: 166 VTFPIALLNNFKMGFTYGIYV 187
           VTFP+ALLNNFKMGFTYG+++
Sbjct: 128 VTFPVALLNNFKMGFTYGLFI 148

[Close]

BLAST of CcUC01G005640 vs. NCBI nr
Match: XP_022969949.1 (uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized protein ycf20 [Cucurbita maxima])

HSP 1 Score: 264.6 bits (675), Expect = 7.1e-67
Identity = 128/141 (90.78%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 46  VHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVHIKAVQDTGGPRRLVDIIRLVPELSRN 105
           V TGLLNY FTP+ N SYWRYD++KSRPSPRS+ IKAVQDTGGPRRLVDIIRLVPELSRN
Sbjct: 8   VSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLGIKAVQDTGGPRRLVDIIRLVPELSRN 67

Query: 106 YFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK 165
           YFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK
Sbjct: 68  YFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK 127

Query: 166 VTFPIALLNNFKMGFTYGIYV 187
           VTFP+ALLNNFKMGFTYG+++
Sbjct: 128 VTFPVALLNNFKMGFTYGLFI 148

[Close]

BLAST of CcUC01G005640 vs. ExPASy Swiss-Prot
Match: Q1XDS2 (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.8e-05
Identity = 34/90 (37.78%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 98  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 157
           L+  L+   + S S     G ISLL GF+++  +S   G  G   +IAA + V  TE  +
Sbjct: 13  LIKNLNNKLYYSLSELTT-GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAATELTS 72

Query: 158 RFYYSRPK-VTFPIALLNNFKMGFTYGIYV 187
           +  YS  K +   I L NNFK+G TYG++V
Sbjct: 73  KIVYSSHKQLNIKINLFNNFKIGITYGLFV 101

[Close]

BLAST of CcUC01G005640 vs. ExPASy Swiss-Prot
Match: P51214 (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.0e-04
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 117 GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYS-RPKVTFPIALLNN 176
           G ISLL GF+++  +S   G  G   +IAA + V   E V++  YS + K    I LLNN
Sbjct: 31  GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYSNKKKYGVRINLLNN 90

Query: 177 FKMGFTYGIYV 187
            K+G TYG++V
Sbjct: 91  LKIGITYGLFV 101

[Close]

BLAST of CcUC01G005640 vs. ExPASy TrEMBL
Match: A0A0A0KPS1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.7e-69
Identity = 134/142 (94.37%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 46  VHTGLLNYGFTPKMNPSYWRYDMVKSRPS-PRSVHIKAVQDTGGPRRLVDIIRLVPELSR 105
           VHT LLNYGFTPKMNPSYWRYDMVKSRPS PRS  +KAVQDTGGPRRLVDIIRLVPELSR
Sbjct: 8   VHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIRLVPELSR 67

Query: 106 NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP 165
           NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP
Sbjct: 68  NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP 127

Query: 166 KVTFPIALLNNFKMGFTYGIYV 187
           KVTFPIALLNNFKMGFTYG+++
Sbjct: 128 KVTFPIALLNNFKMGFTYGLFI 149

[Close]

BLAST of CcUC01G005640 vs. ExPASy TrEMBL
Match: A0A1S3CT33 (uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.2e-67
Identity = 132/142 (92.96%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 46  VHTGLLNYGFTPKMNPSYWRYDMVKSRPS-PRSVHIKAVQDTGGPRRLVDIIRLVPELSR 105
           VHTGLLNYGF+ KMN SYWRYDMVKSRPS PRS  +KAVQDTGGPRRLVDIIRLVPELSR
Sbjct: 8   VHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIRLVPELSR 67

Query: 106 NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP 165
           NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP
Sbjct: 68  NYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP 127

Query: 166 KVTFPIALLNNFKMGFTYGIYV 187
           KVTFPIALLNNFKMGFTYG+++
Sbjct: 128 KVTFPIALLNNFKMGFTYGLFI 149

[Close]

BLAST of CcUC01G005640 vs. ExPASy TrEMBL
Match: A0A6J1I440 (uncharacterized protein ycf20 OS=Cucurbita maxima OX=3661 GN=LOC111468994 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.5e-67
Identity = 128/141 (90.78%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 46  VHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVHIKAVQDTGGPRRLVDIIRLVPELSRN 105
           V TGLLNY FTP+ N SYWRYD++KSRPSPRS+ IKAVQDTGGPRRLVDIIRLVPELSRN
Sbjct: 8   VSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLGIKAVQDTGGPRRLVDIIRLVPELSRN 67

Query: 106 YFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK 165
           YFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK
Sbjct: 68  YFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK 127

Query: 166 VTFPIALLNNFKMGFTYGIYV 187
           VTFP+ALLNNFKMGFTYG+++
Sbjct: 128 VTFPVALLNNFKMGFTYGLFI 148

[Close]

BLAST of CcUC01G005640 vs. ExPASy TrEMBL
Match: A0A6J1ESY7 (uncharacterized protein ycf20 OS=Cucurbita moschata OX=3662 GN=LOC111435716 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 4.5e-67
Identity = 128/141 (90.78%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 46  VHTGLLNYGFTPKMNPSYWRYDMVKSRPSPRSVHIKAVQDTGGPRRLVDIIRLVPELSRN 105
           V TGLLNY FTP+ N SYWRYD++KSRPSPRS+ IKAVQDTGGPRRLVDIIRLVPELSRN
Sbjct: 8   VSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPELSRN 67

Query: 106 YFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK 165
           YFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK
Sbjct: 68  YFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK 127

Query: 166 VTFPIALLNNFKMGFTYGIYV 187
           VTFP+ALLNNFKMGFTYG+++
Sbjct: 128 VTFPVALLNNFKMGFTYGLFI 148

[Close]

BLAST of CcUC01G005640 vs. ExPASy TrEMBL
Match: A0A5D3BMH1 (Ycf20-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00540 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.3e-61
Identity = 122/129 (94.57%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 59  MNPSYWRYDMVKSRPS-PRSVHIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFG 118
           MNPSYWRYDMVKSRPS PRS  +KAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFG
Sbjct: 1   MNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFG 60

Query: 119 GISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFK 178
           GISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFK
Sbjct: 61  GISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFK 120

Query: 179 MGFTYGIYV 187
           MGFTYG+++
Sbjct: 121 MGFTYGLFI 129

[Close]

BLAST of CcUC01G005640 vs. TAIR 10
Match: AT5G43050.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-46
Identity = 91/109 (83.49%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 80  IKAVQDTGG--PRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGA 139
           I+A+Q+T G  PRRL+DIIR VPE+SRNYF+ PSRR LFGGISLLGGFYVAQTISLSFGA
Sbjct: 43  IRALQETEGPTPRRLIDIIRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGA 102

Query: 140 LGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGIYV 187
           LGVNDVIAAV+CVLLTEYVTRFYYSR  VTFPIALLNNFKMGFTYG+++
Sbjct: 103 LGVNDVIAAVLCVLLTEYVTRFYYSRTTVTFPIALLNNFKMGFTYGLFI 151

The following BLAST results are available for this feature:

BLAST of CcUC01G005640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017120.1	2.5e-72	87.34	putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12, partial ...	[more]
XP_004143642.1	3.4e-69	94.37	uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypothetical protein...	[more]
XP_008467245.1	2.5e-67	92.96	PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo]	[more]
KAG6579671.1	5.5e-67	90.78	hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022969949.1	7.1e-67	90.78	uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized...	[more]

BLAST of CcUC01G005640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1XDS2	2.8e-05	37.78	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
P51214	4.0e-04	42.25	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]

BLAST of CcUC01G005640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPS1	1.7e-69	94.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=3 SV=1	[more]
A0A1S3CT33	1.2e-67	92.96	uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644...	[more]
A0A6J1I440	3.5e-67	90.78	uncharacterized protein ycf20 OS=Cucurbita maxima OX=3661 GN=LOC111468994 PE=3 S...	[more]
A0A6J1ESY7	4.5e-67	90.78	uncharacterized protein ycf20 OS=Cucurbita moschata OX=3662 GN=LOC111435716 PE=3...	[more]
A0A5D3BMH1	1.3e-61	94.57	Ycf20-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of CcUC01G005640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43050.1	1.5e-46	83.49	Protein of unknown function (DUF565)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 139..186 e-value: 5.4E-12 score: 46.0
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 46..186
None	No IPR available	PANTHER	PTHR33787:SF5	YCF20-LIKE PROTEIN	coord: 46..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC01G005640.1	CcUC01G005640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane