CcUC01G004540 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC01G004540
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Paired amphipathic helix protein Sin3-like 4
Location	CicolChr01: 4591870 .. 4592145 (-)
RNA-Seq Expression	CcUC01G004540
Synteny	CcUC01G004540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAACGAGGAAGTTCCGAGAAGTTAACCATTACGGAAGCCCTATCATATATCATGAGAGTGAGGGAAAGATTTCAAGAAAACCGGGAAAAGTTTGAAGCTTTCCTTCGAGTAATCCAAGATTTCAAGGCCCAAAGAGTTGATACTTCGGAACTCTTTGCAAAAATAATGGACATGTTTCAAGACCACCCAGATCTTATTATGGGCTTCGCTACTTTCTTGCCCGCAAAACCCCTGGAGGATGATCAACATCCACCTCCACAAAACAAATAA

mRNA sequence

ATGGCGGAACGAGGAAGTTCCGAGAAGTTAACCATTACGGAAGCCCTATCATATATCATGAGAGTGAGGGAAAGATTTCAAGAAAACCGGGAAAAGTTTGAAGCTTTCCTTCGAGTAATCCAAGATTTCAAGGCCCAAAGAGTTGATACTTCGGAACTCTTTGCAAAAATAATGGACATGTTTCAAGACCACCCAGATCTTATTATGGGCTTCGCTACTTTCTTGCCCGCAAAACCCCTGGAGGATGATCAACATCCACCTCCACAAAACAAATAA

Coding sequence (CDS)

ATGGCGGAACGAGGAAGTTCCGAGAAGTTAACCATTACGGAAGCCCTATCATATATCATGAGAGTGAGGGAAAGATTTCAAGAAAACCGGGAAAAGTTTGAAGCTTTCCTTCGAGTAATCCAAGATTTCAAGGCCCAAAGAGTTGATACTTCGGAACTCTTTGCAAAAATAATGGACATGTTTCAAGACCACCCAGATCTTATTATGGGCTTCGCTACTTTCTTGCCCGCAAAACCCCTGGAGGATGATCAACATCCACCTCCACAAAACAAATAA

Protein sequence

MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHPDLIMGFATFLPAKPLEDDQHPPPQNK

Homology

[Close]

BLAST of CcUC01G004540 vs. NCBI nr
Match: XP_022151192.1 (paired amphipathic helix protein Sin3-like 4 isoform X2 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-17
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 1   MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDM 60
           MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A++ D+
Sbjct: 31  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIARVKDL 90

Query: 61  FQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK 92
           F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Sbjct: 91  FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 124

[Close]

BLAST of CcUC01G004540 vs. NCBI nr
Match: XP_022151193.1 (paired amphipathic helix protein Sin3-like 4 isoform X3 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-17
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 1  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDM 60
          MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A++ D+
Sbjct: 1  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIARVKDL 60

Query: 61 FQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK 92
          F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Sbjct: 61 FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 94

[Close]

BLAST of CcUC01G004540 vs. NCBI nr
Match: XP_022151191.1 (paired amphipathic helix protein Sin3-like 4 isoform X1 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-17
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 1   MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDM 60
           MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A++ D+
Sbjct: 31  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIARVKDL 90

Query: 61  FQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK 92
           F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Sbjct: 91  FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 124

[Close]

BLAST of CcUC01G004540 vs. NCBI nr
Match: XP_022943143.1 (paired amphipathic helix protein Sin3-like 4 isoform X3 [Cucurbita moschata])

HSP 1 Score: 98.2 bits (243), Expect = 3.9e-17
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDM 60
          MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ +  ++ D+
Sbjct: 1  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIGRVKDL 60

Query: 61 FQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK 92
          F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Sbjct: 61 FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 94

[Close]

BLAST of CcUC01G004540 vs. NCBI nr
Match: XP_022943142.1 (paired amphipathic helix protein Sin3-like 4 isoform X2 [Cucurbita moschata])

HSP 1 Score: 98.2 bits (243), Expect = 3.9e-17
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1   MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDM 60
           MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ +  ++ D+
Sbjct: 31  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIGRVKDL 90

Query: 61  FQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK 92
           F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Sbjct: 91  FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 124

[Close]

BLAST of CcUC01G004540 vs. ExPASy Swiss-Prot
Match: Q9XIE1 (Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana OX=3702 GN=SNL5 PE=3 SV=3)

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-15
Identity = 36/72 (50.00%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 5   GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDH 64
           G++  LT  +AL+Y+  V++ FQ+N+EK+E FL V++DFKAQRVDT+ + A++ D+F+ +
Sbjct: 36  GTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDLFKGY 95

Query: 65  PDLIMGFATFLP 77
            DL++GF TFLP
Sbjct: 96  DDLLLGFNTFLP 107

[Close]

BLAST of CcUC01G004540 vs. ExPASy Swiss-Prot
Match: Q9SRH9 (Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana OX=3702 GN=SNL1 PE=1 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 4.9e-15
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 4   RGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQD 63
           R  S+KLT  +ALSY+  V+E FQ+ REK++ FL V++DFKAQR DT  + A++ ++F+ 
Sbjct: 47  RRVSQKLTTNDALSYLREVKEMFQDQREKYDRFLEVMKDFKAQRTDTGGVIARVKELFKG 106

Query: 64  HPDLIMGFATFLP 77
           H +LI GF TFLP
Sbjct: 107 HNNLIYGFNTFLP 119

[Close]

BLAST of CcUC01G004540 vs. ExPASy Swiss-Prot
Match: O48686 (Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana OX=3702 GN=SNL3 PE=1 SV=3)

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-14
Identity = 38/94 (40.43%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 1  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDM 60
          M   GS++KLT  +AL+Y+  V+++FQ+ R K++ FL V+++FK+QRVDT+ +  ++ ++
Sbjct: 1  MVGGGSAQKLTTNDALAYLKAVKDKFQDQRGKYDEFLEVMKNFKSQRVDTAGVITRVKEL 60

Query: 61 FQDHPDLIMGFATFLPAK---PLEDDQHPPPQNK 92
          F+ H +LI+GF TFLP      L+ +   PP  K
Sbjct: 61 FKGHQELILGFNTFLPKGFEITLQPEDGQPPLKK 94

[Close]

BLAST of CcUC01G004540 vs. ExPASy Swiss-Prot
Match: O04539 (Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana OX=3702 GN=SNL4 PE=3 SV=3)

HSP 1 Score: 78.6 bits (192), Expect = 4.1e-14
Identity = 40/95 (42.11%), Postives = 66/95 (69.47%), Query Frame = 0


Query: 1  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDM 60
          M    S++KLT  +AL+Y+  V+++FQ+ R+K++ FL V++DFKAQRVDT+ +  ++ ++
Sbjct: 1  MVGGSSAQKLTTNDALAYLKAVKDKFQDKRDKYDEFLEVMKDFKAQRVDTTGVILRVKEL 60

Query: 61 FQDHPDLIMGFATFLP------AKPLEDDQHPPPQ 90
          F+ + +LI+GF TFLP       +P EDDQ   P+
Sbjct: 61 FKGNRELILGFNTFLPKGFEITLRP-EDDQPAAPK 94

[Close]

BLAST of CcUC01G004540 vs. ExPASy Swiss-Prot
Match: Q9LFQ3 (Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana OX=3702 GN=SNL2 PE=1 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 9.2e-14
Identity = 33/71 (46.48%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 6   SSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDHP 65
           +++KLT  +AL+Y+  V+E FQ+ R+K++ FL V++DFKAQ+ DTS + +++ ++F+ H 
Sbjct: 44  NTQKLTTDDALTYLKEVKEMFQDQRDKYDMFLEVMKDFKAQKTDTSGVISRVKELFKGHN 103

Query: 66  DLIMGFATFLP 77
           +LI GF TFLP
Sbjct: 104 NLIFGFNTFLP 114

[Close]

BLAST of CcUC01G004540 vs. ExPASy TrEMBL
Match: A0A6J1DDV1 (paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019172 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.4e-18
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 1   MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDM 60
           MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A++ D+
Sbjct: 31  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIARVKDL 90

Query: 61  FQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK 92
           F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Sbjct: 91  FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 124

[Close]

BLAST of CcUC01G004540 vs. ExPASy TrEMBL
Match: A0A6J1DCT7 (paired amphipathic helix protein Sin3-like 4 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111019172 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.4e-18
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 1   MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDM 60
           MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A++ D+
Sbjct: 31  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIARVKDL 90

Query: 61  FQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK 92
           F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Sbjct: 91  FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 124

[Close]

BLAST of CcUC01G004540 vs. ExPASy TrEMBL
Match: A0A6J1DBI6 (paired amphipathic helix protein Sin3-like 4 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111019172 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.4e-18
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 1  MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDM 60
          MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ + A++ D+
Sbjct: 1  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIARVKDL 60

Query: 61 FQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK 92
          F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Sbjct: 61 FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 94

[Close]

BLAST of CcUC01G004540 vs. ExPASy TrEMBL
Match: A0A6J1JXD3 (paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489162 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.9e-17
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1   MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDM 60
           MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ +  ++ D+
Sbjct: 31  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIGRVKDL 90

Query: 61  FQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK 92
           F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Sbjct: 91  FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 124

[Close]

BLAST of CcUC01G004540 vs. ExPASy TrEMBL
Match: A0A6J1FQW7 (paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447961 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.9e-17
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1   MAERGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDM 60
           MA  GS++KLT  +AL Y+ RV++ FQ+ REK+E FL V++DFKAQR+DT+ +  ++ D+
Sbjct: 31  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIGRVKDL 90

Query: 61  FQDHPDLIMGFATFLP-----AKPLEDDQHPPPQNK 92
           F+ H DLI+GF TFLP       PLEDDQ  PPQ K
Sbjct: 91  FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 124

[Close]

BLAST of CcUC01G004540 vs. TAIR 10
Match: AT1G59890.1 (SIN3-like 5 )

HSP 1 Score: 82.0 bits (201), Expect = 2.7e-16
Identity = 36/72 (50.00%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 5   GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDH 64
           G++  LT  +AL+Y+  V++ FQ+N+EK+E FL V++DFKAQRVDT+ + A++ D+F+ +
Sbjct: 36  GTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDLFKGY 95

Query: 65  PDLIMGFATFLP 77
            DL++GF TFLP
Sbjct: 96  DDLLLGFNTFLP 107

[Close]

BLAST of CcUC01G004540 vs. TAIR 10
Match: AT1G59890.3 (SIN3-like 5 )

HSP 1 Score: 82.0 bits (201), Expect = 2.7e-16
Identity = 36/72 (50.00%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 5   GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDH 64
           G++  LT  +AL+Y+  V++ FQ+N+EK+E FL V++DFKAQRVDT+ + A++ D+F+ +
Sbjct: 36  GTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDLFKGY 95

Query: 65  PDLIMGFATFLP 77
            DL++GF TFLP
Sbjct: 96  DDLLLGFNTFLP 107

[Close]

BLAST of CcUC01G004540 vs. TAIR 10
Match: AT1G59890.2 (SIN3-like 5 )

HSP 1 Score: 82.0 bits (201), Expect = 2.7e-16
Identity = 36/72 (50.00%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 5   GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDH 64
           G++  LT  +AL+Y+  V++ FQ+N+EK+E FL V++DFKAQRVDT+ + A++ D+F+ +
Sbjct: 36  GTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDLFKGY 95

Query: 65  PDLIMGFATFLP 77
            DL++GF TFLP
Sbjct: 96  DDLLLGFNTFLP 107

[Close]

BLAST of CcUC01G004540 vs. TAIR 10
Match: AT1G59890.4 (SIN3-like 5 )

HSP 1 Score: 82.0 bits (201), Expect = 2.7e-16
Identity = 36/72 (50.00%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 5   GSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQDH 64
           G++  LT  +AL+Y+  V++ FQ+N+EK+E FL V++DFKAQRVDT+ + A++ D+F+ +
Sbjct: 36  GTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDLFKGY 95

Query: 65  PDLIMGFATFLP 77
            DL++GF TFLP
Sbjct: 96  DDLLLGFNTFLP 107

[Close]

BLAST of CcUC01G004540 vs. TAIR 10
Match: AT3G01320.1 (SIN3-like 1 )

HSP 1 Score: 81.6 bits (200), Expect = 3.5e-16
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 4   RGSSEKLTITEALSYIMRVRERFQENREKFEAFLRVIQDFKAQRVDTSELFAKIMDMFQD 63
           R  S+KLT  +ALSY+  V+E FQ+ REK++ FL V++DFKAQR DT  + A++ ++F+ 
Sbjct: 47  RRVSQKLTTNDALSYLREVKEMFQDQREKYDRFLEVMKDFKAQRTDTGGVIARVKELFKG 106

Query: 64  HPDLIMGFATFLP 77
           H +LI GF TFLP
Sbjct: 107 HNNLIYGFNTFLP 119

The following BLAST results are available for this feature:

BLAST of CcUC01G004540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151192.1	1.3e-17	54.17	paired amphipathic helix protein Sin3-like 4 isoform X2 [Momordica charantia]	[more]
XP_022151193.1	1.3e-17	54.17	paired amphipathic helix protein Sin3-like 4 isoform X3 [Momordica charantia]	[more]
XP_022151191.1	1.3e-17	54.17	paired amphipathic helix protein Sin3-like 4 isoform X1 [Momordica charantia]	[more]
XP_022943143.1	3.9e-17	53.13	paired amphipathic helix protein Sin3-like 4 isoform X3 [Cucurbita moschata]	[more]
XP_022943142.1	3.9e-17	53.13	paired amphipathic helix protein Sin3-like 4 isoform X2 [Cucurbita moschata]	[more]

BLAST of CcUC01G004540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XIE1	3.7e-15	50.00	Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9SRH9	4.9e-15	52.05	Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
O48686	2.4e-14	40.43	Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
O04539	4.1e-14	42.11	Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LFQ3	9.2e-14	46.48	Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of CcUC01G004540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DDV1	6.4e-18	54.17	paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Momordica charantia O...	[more]
A0A6J1DCT7	6.4e-18	54.17	paired amphipathic helix protein Sin3-like 4 isoform X2 OS=Momordica charantia O...	[more]
A0A6J1DBI6	6.4e-18	54.17	paired amphipathic helix protein Sin3-like 4 isoform X3 OS=Momordica charantia O...	[more]
A0A6J1JXD3	1.9e-17	53.13	paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1FQW7	1.9e-17	53.13	paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Cucurbita moschata OX...	[more]

BLAST of CcUC01G004540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G59890.1	2.7e-16	50.00	SIN3-like 5	[more]
AT1G59890.3	2.7e-16	50.00	SIN3-like 5	[more]
AT1G59890.2	2.7e-16	50.00	SIN3-like 5	[more]
AT1G59890.4	2.7e-16	50.00	SIN3-like 5	[more]
AT3G01320.1	3.5e-16	52.05	SIN3-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036600	Paired amphipathic helix superfamily	GENE3D	1.20.1160.11	Paired amphipathic helix	coord: 14..76 e-value: 8.1E-20 score: 73.0
IPR036600	Paired amphipathic helix superfamily	SUPERFAMILY	47762	PAH2 domain	coord: 7..76
IPR003822	Paired amphipathic helix	PFAM	PF02671	PAH	coord: 31..75 e-value: 2.0E-12 score: 47.0
IPR003822	Paired amphipathic helix	PROSITE	PS51477	PAH	coord: 8..78 score: 16.901154
IPR039774	Transcriptional regulatory protein Sin3-like	PANTHER	PTHR12346	SIN3B-RELATED	coord: 5..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC01G004540.1	CcUC01G004540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003714	transcription corepressor activity