CcUC01G002160 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC01G002160
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionCox19-like CHCH family protein
LocationCicolChr01: 1993614 .. 1996357 (-)
RNA-Seq ExpressionCcUC01G002160
SyntenyCcUC01G002160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTGACGAATTGAGTCTATAATTATAAAGAAGAAACCCACCGTGTGGGTTGGCACGTGGGAATCCTCTTTTCCCCATTTTAGGCGCAGCTTTTGGGTTTCTTCCGTTCTCCACCCATTGTTTCTCCATTCCCTTTGTTAAACAAACAAGCTGCAGCAGCTCGCTTGTTTTTGAAATCCACTTACAGTTCCGCGATGGATGAACCTCAAGCTCACCCGGTTTGCGCTCAGGAAGCTCTCAATTTGCTCAATTGCGTTACGGAATCTCCCTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGTGAATGCGTGCTCTCCAAGGTATTCATTTCCTACTCTTCAATTTGCCCTAATCTTTCCATGCTTCTTGTTATCAATCGGTACTGTTTTTAGAATTTTCGAATTAGGTCGTCTGAATCGGAGTTCGATCGTCATTCTTCGTATCGTGATTCAGTTATAGTAATTAACTAATGGAAACAGATGCAGGTGGACTTTGGTTTAACGCTGATTAAGATATTGATCAGACATGTGTCGGATTTTTATTTGATTTTTTGTTCTGATTGGCTTTAACTTAATGTAGAATGAAGTTTTCTGTTTCTGATGTTATTTTCTTTGATCTGTTACTTCATACAGAAAGTGAAGAAGTTTTCTCTGGCTGAAGAAGAACAAACAAAACCAATCAAGAAGAATGCTTGAAGGAAGCAATTTTGTAAGACTGATTTGTTCATCTTAAAGTAAAGTCTGGTATTACTGTAATCGAAAGATTTTCATTTCTATGAGATATTGTCTCTTGAACTTTGCTGAAGTAGAGAACCCATGTATCTTTCCCTTCCAATGGTTTCGAATTGAATTCTACCAAAATAGTGACCATTGAGTTGCAAACAAGCCCAATAAATTCTGTTTCTGAAATCTGAAAGATTGTCTATATTTCTCATATGTTATTCTAACAAATCCATTCATGTTGTTAATGAGCTTAGGAATTTCTTGAGAACAACACTCTTTAACTCAAAGAAGTTTAGATCAATTTTATTTCATTTGATCAATCTAATTTGTCAACATGGCATAGTAAGGGCTCAGGTCCCATTTTTTGTGGGTTAAAAATAACATTTTCGGTCCTTATATTTGTTTAATTTTAGTTTCTATATTTTTAATTCAATTTTAGTCCCATAATTTCAAATAAATTTTAAATTCTCAAAATTAATTTTTCTTAAATTGATTTATTTTTTAAAAAGTTAATAATAAACTAGCATACAGGAACCAAAATGGTCTTGAGCCTTTTGAGCCTTTTTTGTATGATGTTTTTAAAATTAAACATTCCACAAGTGGGTCTCTTTGTTTTTATTATCTAACTTTGTAACTATTTCCTCATTAAGGATGGAAATCTTGTTACTCTTGCGAGAAGTCAGCACAATTTTCAAACACAAAAAACTACTTGTGAAAATGGGGCCTAAGGGTTATACAGTTTTTGTTTATGTTTCATTTTCATGACTTCTATTTTCTCAACAAATTAAAGACTCATCAAATCTACCAATAACTATTAAACAACAGTTGATTTAAAAAGAAACAGAATTGGCAATGGATAATGGATAGGAGAAAAGCCACCATTGAGGTAAAATAAGTTATCATTGCATTCATTACATGTAAAGTTCAGTTCCATGAGATCATATTAGAAAAAGAAAAATGAAAAGACCATATTGTCTATGATAAATTCTTCAACCCCATTTGACATTCCTGCTCTGCGATATCTGACTCTGAATTCAATTTATAAATTGATAGAAAGGTCCGCTGAATGGATAATGTAGGTGAGCACCAAGGCCAACAACATCAATACATAGGCAATCCCTTGGTCTATGCTTGTCCCTGCAAATCAAAGTTATAATAGTTCTCATCAGTTGCATTATATAACCCGTCCGTTTGATAATCATTTATGCTACATTTGATATTATTATTTATTGATCAGGCAAGAAGAAGAAGAAGTAACCATCGCTAGCAGCAGGAGGTTGAGCCGGAGCCAAAGATTGAGCATGAGCAGAGGAAAGCATAGCCAAAAGCAAAGCAACAGCAAACAAAGGGACCTTATAAGCAACGACCGCCATTGTAGAAAGTTGTAAGTGAAAATTAAAAAGAAAGAGAAAAAGAAAAAAAAAGAAAAGGGAATGAAATCTCTCTCTGCAACGTCTCTCTCAGAAATGGAAGAAGTAGAGAGGAAAGCTCCGGAGAGGCGAAGCAGAGAGAGATATTATTAGAAAATTAAAGTAGTATCTAGGCCGACAATTGATAAATGGTTTTGAAACTGTCAAAAGGGGAGGGGGCTAGCCGAACCACCACCAATTGACAGTTCCAATGAAGAAGACGACGACGACGGCGTGGCAATGGCGGTGTGCCTCTCAACCCATGGGGCTTTGGATTTTATAGCCTTCATTTGGTTTGGAATGTTGCAATTGGCAACTACAATGGCCATCTAAATCGCTCATTTCTTACTCTTTTTTTGGGTTTCCTTGAAATAGTCTATAGGCTTCTTTTTCGTTCTCGTGCTTCCATTTCCTTTTTCTTCCTTTTGGATTCTATTGTCATGGGTTAATATAGCAAATTTCGAAAGATGAAAGAGTATTTTTGAAACTAAGTGAAAACTTTAGAAGTATTTCTTACCACCATTCATTTAGGGGCATTTGTTATTTTTTTTTGTAAAAGATGCAGCACAACCATATTTTTAGATAATCATATTTGTTTTTCTA

mRNA sequence

CTTTTGACGAATTGAGTCTATAATTATAAAGAAGAAACCCACCGTGTGGGTTGGCACGTGGGAATCCTCTTTTCCCCATTTTAGGCGCAGCTTTTGGGTTTCTTCCGTTCTCCACCCATTGTTTCTCCATTCCCTTTGTTAAACAAACAAGCTGCAGCAGCTCGCTTGTTTTTGAAATCCACTTACAGTTCCGCGATGGATGAACCTCAAGCTCACCCGGTTTGCGCTCAGGAAGCTCTCAATTTGCTCAATTGCGTTACGGAATCTCCCTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGTGAATGCGTGCTCTCCAAGAAAGTGAAGAAGCAAGAAGAAGAAGAAGTAACCATCGCTAGCAGCAGGAGGTTGAGCCGGAGCCAAAGATTGAGCATGAGCAGAGGAAAGCATAGCCAAAAGCAAAGCAACAGCAAACAAAGGGACCTTATAAGCAACGACCGCCATTGTAGAAAGTTGTAAGTGAAAATTAAAAAGAAAGAGAAAAAGAAAAAAAAAGAAAAGGGAATGAAATCTCTCTCTGCAACGTCTCTCTCAGAAATGGAAGAAGTAGAGAGGAAAGCTCCGGAGAGGCGAAGCAGAGAGAGATATTATTAGAAAATTAAAGTAGTATCTAGGCCGACAATTGATAAATGGTTTTGAAACTGTCAAAAGGGGAGGGGGCTAGCCGAACCACCACCAATTGACAGTTCCAATGAAGAAGACGACGACGACGGCGTGGCAATGGCGGTGTGCCTCTCAACCCATGGGGCTTTGGATTTTATAGCCTTCATTTGGTTTGGAATGTTGCAATTGGCAACTACAATGGCCATCTAAATCGCTCATTTCTTACTCTTTTTTTGGGTTTCCTTGAAATAGTCTATAGGCTTCTTTTTCGTTCTCGTGCTTCCATTTCCTTTTTCTTCCTTTTGGATTCTATTGTCATGGGTTAATATAGCAAATTTCGAAAGATGAAAGAGTATTTTTGAAACTAAGTGAAAACTTTAGAAGTATTTCTTACCACCATTCATTTAGGGGCATTTGTTATTTTTTTTTGTAAAAGATGCAGCACAACCATATTTTTAGATAATCATATTTGTTTTTCTA

Coding sequence (CDS)

ATGGATGAACCTCAAGCTCACCCGGTTTGCGCTCAGGAAGCTCTCAATTTGCTCAATTGCGTTACGGAATCTCCCTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGTGAATGCGTGCTCTCCAAGAAAGTGAAGAAGCAAGAAGAAGAAGAAGTAACCATCGCTAGCAGCAGGAGGTTGAGCCGGAGCCAAAGATTGAGCATGAGCAGAGGAAAGCATAGCCAAAAGCAAAGCAACAGCAAACAAAGGGACCTTATAAGCAACGACCGCCATTGTAGAAAGTTGTAA

Protein sequence

MDEPQAHPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKQEEEEVTIASSRRLSRSQRLSMSRGKHSQKQSNSKQRDLISNDRHCRKL
Homology
[Close]
BLAST of CcUC01G002160 vs. NCBI nr
Match: KGN50036.1 (hypothetical protein Csa_000619 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 8.4e-18
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1  MDEPQAHPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKK---QEEEE 55
          MDEPQ  PVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKK    EEE+
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQ 57

[Close]
BLAST of CcUC01G002160 vs. NCBI nr
Match: KAA0042698.1 (Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like CHCH family protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-17
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1  MDEPQAHPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKK---QEEEE 55
          MDEPQ  PVCAQEALNLLNCVTESPFDQ+KCYRLLHSLRECVLSKKVKK    EEE+
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQ 57

[Close]
BLAST of CcUC01G002160 vs. NCBI nr
Match: KAG6606053.1 (hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 6.0e-16
Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 0 

Query: 1  MDEPQAHPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKQEEEEVTIASS 60
          MD+ QA PVCAQEAL+LLNCVT+SPFDQEKCYRLLHSLRECVLSKKVKK      ++A  
Sbjct: 1  MDDAQAQPVCAQEALDLLNCVTDSPFDQEKCYRLLHSLRECVLSKKVKK-----FSLADE 60

Query: 61 RRLSRSQRLS 71
           R  RS + S
Sbjct: 61 ERAKRSGKKS 65

[Close]
BLAST of CcUC01G002160 vs. NCBI nr
Match: KAG7017003.1 (hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.9 bits (224), Expect = 6.6e-15
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 0 

Query: 1  MDEPQAHPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKQEEEE 55
          M EP++ PVCAQEAL+LLNCVTESPFDQ+KCYRLLHSLRECV+SKK    +EE+
Sbjct: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVISKKFSLADEEQ 66

[Close]
BLAST of CcUC01G002160 vs. NCBI nr
Match: KAF5734209.1 (hypothetical protein HS088_TW16G00654 [Tripterygium wilfordii])

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 0 

Query: 1  MDEPQAHPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKK 50
          MDE +A PVCAQEAL+LLNCVT+SPFDQEKC +LL+SLRECVL+KKVKK
Sbjct: 1  MDEARARPVCAQEALDLLNCVTQSPFDQEKCVQLLNSLRECVLNKKVKK 49

[Close]
BLAST of CcUC01G002160 vs. ExPASy TrEMBL
Match: A0A0A0KQS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.0e-18
Identity = 50/57 (87.72%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1  MDEPQAHPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKK---QEEEE 55
          MDEPQ  PVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKK    EEE+
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQ 57

[Close]
BLAST of CcUC01G002160 vs. ExPASy TrEMBL
Match: A0A5D3C4E2 (Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002030 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.0e-18
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1  MDEPQAHPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKK---QEEEE 55
          MDEPQ  PVCAQEALNLLNCVTESPFDQ+KCYRLLHSLRECVLSKKVKK    EEE+
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQ 57

[Close]
BLAST of CcUC01G002160 vs. ExPASy TrEMBL
Match: A0A7J7CJI7 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.9e-14
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 0 

Query: 1  MDEPQAHPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKK 50
          MDE +A PVCAQEAL+LLNCVT+SPFDQEKC +LL+SLRECVL+KKVKK
Sbjct: 1  MDEARARPVCAQEALDLLNCVTQSPFDQEKCVQLLNSLRECVLNKKVKK 49

[Close]
BLAST of CcUC01G002160 vs. ExPASy TrEMBL
Match: A0A061GD02 (Cox19-like CHCH family protein OS=Theobroma cacao OX=3641 GN=TCM_016398 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.8e-13
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 1  MDEPQAHPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKK 50
          M+E  A PVCAQEAL LLNCVT+SPFDQEKC RLLHSLR+CVL KKVKK
Sbjct: 1  MEEAGAQPVCAQEALALLNCVTQSPFDQEKCIRLLHSLRQCVLDKKVKK 49

[Close]
BLAST of CcUC01G002160 vs. ExPASy TrEMBL
Match: A0A5J4ZSA8 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_011592 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.1e-13
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 1  MDEPQ-AHPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKK 50
          MD+ Q   PVCAQEALNLLNCVTESPFDQ+KC RLLHSLR+CV SKKVKK
Sbjct: 1  MDQGQPPQPVCAQEALNLLNCVTESPFDQDKCLRLLHSLRDCVQSKKVKK 50

[Close]
BLAST of CcUC01G002160 vs. TAIR 10
Match: AT4G23760.1 (Cox19-like CHCH family protein )

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-15
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 1  MDEPQAHPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKK 50
          M++    P+C QEAL LLNCV ESPFDQEKC R L SLRECVLSKKVKK
Sbjct: 47 MEKQSTQPICGQEALQLLNCVAESPFDQEKCVRFLQSLRECVLSKKVKK 95

The following BLAST results are available for this feature:
BLAST of CcUC01G002160 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50036.18.4e-1887.72hypothetical protein Csa_000619 [Cucumis sativus][more]
KAA0042698.11.9e-1785.96Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like... [more]
KAG6606053.16.0e-1670.00hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7017003.16.6e-1575.93hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAF5734209.11.6e-1381.63hypothetical protein HS088_TW16G00654 [Tripterygium wilfordii][more]
BLAST of CcUC01G002160 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC01G002160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQS74.0e-1887.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1[more]
A0A5D3C4E29.0e-1885.96Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A7J7CJI77.9e-1481.63Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 ... [more]
A0A061GD021.8e-1381.63Cox19-like CHCH family protein OS=Theobroma cacao OX=3641 GN=TCM_016398 PE=4 SV=... [more]
A0A5J4ZSA85.1e-1382.00Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_011592 PE=4 SV=1[more]
BLAST of CcUC01G002160 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G23760.12.4e-1573.47Cox19-like CHCH family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.1130CytochromE C oxidase copper chaperonecoord: 5..88
e-value: 4.7E-5
score: 25.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..98
NoneNo IPR availablePANTHERPTHR37750COX19-LIKE CHCH FAMILY PROTEINcoord: 1..60
NoneNo IPR availablePROSITEPS51808CHCHcoord: 7..49
score: 10.985102
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILY47072Cysteine alpha-hairpin motifcoord: 7..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC01G002160.1CcUC01G002160.1mRNA