CcUC01G001310 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC01G001310
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RING-type E3 ubiquitin transferase
Location	CicolChr01: 1114035 .. 1114583 (-)
RNA-Seq Expression	CcUC01G001310
Synteny	CcUC01G001310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCCAACTCCTTTAGACGCCGACGACACCATCCGCTTCCAACCACCGCCATCGCCTCCGTGTCACGACCTCCGCGCCTGTACTTGGCGGCCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCCGCCGCCGTCGTCATCATCCTCCTCTGTGGGCTCATCTGCGCTCTCGCCCTCAACACCGCCATCCGCTGCTTCCTCCGCCGTCGCGGCAGTGCCGATAACGATCCGAGTGATAGCCGGCAGGAGGAACTTCCGGACGAGACGAAGCCGACGCTAGTGGACAAATTGAAGATGGCTCCGGCGCTGGTGTTCTCGGAGGAAATGAAACCGAAACTCGCCGGCGTGGAGGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCAATTTGTAAGCACGGGTTTCATGTTCAGTGTATTCAAACGTGGTTGATTTTGCATTCTTCTTGTCCGACTTGCCGCCGTAGCTACCTCCCTCCCTCGCCGTCGTCTTCTGTGAGCGGCGGCGACGGCAACCCCTGA

mRNA sequence

ATGCGGCCAACTCCTTTAGACGCCGACGACACCATCCGCTTCCAACCACCGCCATCGCCTCCGTGTCACGACCTCCGCGCCTGTACTTGGCGGCCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCCGCCGCCGTCGTCATCATCCTCCTCTGTGGGCTCATCTGCGCTCTCGCCCTCAACACCGCCATCCGCTGCTTCCTCCGCCGTCGCGGCAGTGCCGATAACGATCCGAGTGATAGCCGGCAGGAGGAACTTCCGGACGAGACGAAGCCGACGCTAGTGGACAAATTGAAGATGGCTCCGGCGCTGGTGTTCTCGGAGGAAATGAAACCGAAACTCGCCGGCGTGGAGGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCAATTTGTAAGCACGGGTTTCATGTTCAGTGTATTCAAACGTGGTTGATTTTGCATTCTTCTTGTCCGACTTGCCGCCGTAGCTACCTCCCTCCCTCGCCGTCGTCTTCTGTGAGCGGCGGCGACGGCAACCCCTGA

Coding sequence (CDS)

ATGCGGCCAACTCCTTTAGACGCCGACGACACCATCCGCTTCCAACCACCGCCATCGCCTCCGTGTCACGACCTCCGCGCCTGTACTTGGCGGCCGTACTCCAATTCCAGAGACTTCGAAGCCAACGCCGCCGCCGTCGTCATCATCCTCCTCTGTGGGCTCATCTGCGCTCTCGCCCTCAACACCGCCATCCGCTGCTTCCTCCGCCGTCGCGGCAGTGCCGATAACGATCCGAGTGATAGCCGGCAGGAGGAACTTCCGGACGAGACGAAGCCGACGCTAGTGGACAAATTGAAGATGGCTCCGGCGCTGGTGTTCTCGGAGGAAATGAAACCGAAACTCGCCGGCGTGGAGGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCAATTTGTAAGCACGGGTTTCATGTTCAGTGTATTCAAACGTGGTTGATTTTGCATTCTTCTTGTCCGACTTGCCGCCGTAGCTACCTCCCTCCCTCGCCGTCGTCTTCTGTGAGCGGCGGCGACGGCAACCCCTGA

Protein sequence

MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAAVVIILLCGLICALALNTAIRCFLRRRGSADNDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDGNP

Homology

[Close]

BLAST of CcUC01G001310 vs. NCBI nr
Match: XP_004145965.1 (RING-H2 finger protein ATL79 [Cucumis sativus] >KGN49952.1 hypothetical protein Csa_000591 [Cucumis sativus])

HSP 1 Score: 352.1 bits (902), Expect = 3.0e-93
Identity = 168/182 (92.31%), Postives = 176/182 (96.70%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAAVVIILLCGLICALAL 60
           MRPTPLDADDT+RFQPPPSPPCHDLRACTWRPYS+SRDFEANAA VVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADNDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAE 120
           NTAIRCFLRRRG++D+D SDSRQEELP+ETKPTL+DKLKMAPALVFS EMKPKLAG EAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLMDKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSS SGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGDG 180

Query: 181 NP 183
           NP
Sbjct: 181 NP 182

[Close]

BLAST of CcUC01G001310 vs. NCBI nr
Match: XP_038875287.1 (RING-H2 finger protein ATL79-like [Benincasa hispida])

HSP 1 Score: 350.9 bits (899), Expect = 6.6e-93
Identity = 170/181 (93.92%), Postives = 173/181 (95.58%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAAVVIILLCGLICALAL 60
           MRPTPLDADDT+ FQPPPSPPCHDLRACTWRPYSNSRDFEANAA VVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVAFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADNDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAE 120
           NTAIRCFLRRRGSAD+DPSDSRQEEL DETKPTLVDKLKMAPALVFS E KPKLAG EAE
Sbjct: 61  NTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSAETKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEF EGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSP SSVSGGDG
Sbjct: 121 CTICLTEFLEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPPSSVSGGDG 180

Query: 181 N 182
           +
Sbjct: 181 D 181

[Close]

BLAST of CcUC01G001310 vs. NCBI nr
Match: XP_008437481.1 (PREDICTED: RING-H2 finger protein ATL79-like [Cucumis melo] >KAA0042624.1 RING-H2 finger protein ATL79-like [Cucumis melo var. makuwa] >TYK06025.1 RING-H2 finger protein ATL79-like [Cucumis melo var. makuwa])

HSP 1 Score: 350.5 bits (898), Expect = 8.6e-93
Identity = 168/182 (92.31%), Postives = 176/182 (96.70%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAAVVIILLCGLICALAL 60
           MRPTPLDAD+T+RFQPPPSPPCHDLRACTWRPYSNSRDFEANAA VVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADNDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAE 120
           NTAIRCFLRRRG++D+D +DSRQEEL +ETKPTLV+KLKMAPALVFS EMKPKLAG EAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSSVSGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180

Query: 181 NP 183
           NP
Sbjct: 181 NP 182

[Close]

BLAST of CcUC01G001310 vs. NCBI nr
Match: KAG7017072.1 (RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 335.1 bits (858), Expect = 3.7e-88
Identity = 163/182 (89.56%), Postives = 170/182 (93.41%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQ-PPPSPPCHDLRACTWRPYSNSRDFEANAAAVVIILLCGLICALA 60
           MRPTPLDADDT+ FQ PPP PPCHDLRACTWRPYSNSRDFEANAA VVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGSADNDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEA 120
           LNTAIRCFLRRRG AD +PSD+RQEEL DETKPTLVDKLKMAPALVFS E+KPKLAG EA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

Query: 181 GN 182
           G+
Sbjct: 181 GD 182

[Close]

BLAST of CcUC01G001310 vs. NCBI nr
Match: XP_022928967.1 (RING-H2 finger protein ATL79-like [Cucurbita moschata] >KAG6579615.1 RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 335.1 bits (858), Expect = 3.7e-88
Identity = 163/182 (89.56%), Postives = 170/182 (93.41%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQ-PPPSPPCHDLRACTWRPYSNSRDFEANAAAVVIILLCGLICALA 60
           MRPTPLDADDT+ FQ PPP PPCHDLRACTWRPYSNSRDFEANAA VVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGSADNDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEA 120
           LNTAIRCFLRRRG AD +PSD+RQEEL DETKPTLVDKLKMAPALVFS E+KPKLAG EA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

Query: 181 GN 182
           G+
Sbjct: 181 GD 182

[Close]

BLAST of CcUC01G001310 vs. ExPASy Swiss-Prot
Match: Q9FGJ6 (RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.7e-31
Identity = 74/161 (45.96%), Postives = 99/161 (61.49%), Query Frame = 0


Query: 19  SPPCHDLRACTWRPYSNSRDFEANAAAVVIILLCGLICALALNTAIRCFLRRRGSADNDP 78
           +P C+    C W+PYSNS DF ANA+ ++I+++  LICAL+L  AIRCFLR     ++D 
Sbjct: 17  TPTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETEDD- 76

Query: 79  SDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLA 138
                 E    + PT        P LV+S ++  +LAG EAEC ICL+EF +GE I+VL 
Sbjct: 77  -HKPDPEAAASSTPT-------TPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLE 136

Query: 139 ICKHGFHVQCIQTWLILHSSCPTCRRSYL---PPSPSSSVS 177
            C+HGFHV+CI  WL   SSCPTCR S       +PSS ++
Sbjct: 137 KCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSETPSSHIN 165

[Close]

BLAST of CcUC01G001310 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.4e-23
Identity = 67/152 (44.08%), Postives = 90/152 (59.21%), Query Frame = 0


Query: 34  SNSRDFEANAAAVVII---LLCGLICALALNTAIRCFLR--RRGSADNDPSDSRQEELPD 93
           SN+++  +    +VII   LLC LICAL +N+ +RC LR  RR + + DP D+      +
Sbjct: 29  SNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTN----AN 88

Query: 94  ETKPTLVDKLKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLAICKHGFHVQC 153
             K      LK+ P   +S E+K K      EC ICL +F EGE +RVL  C HGFHV+C
Sbjct: 89  VAKGIKKRALKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKC 148

Query: 154 IQTWLILHSSCPTCRRSYLP-PSPSSSVSGGD 180
           I TWL+ HSSCPTCR+S L   +P++    GD
Sbjct: 149 IDTWLLSHSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]

BLAST of CcUC01G001310 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-22
Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 0


Query: 32  PYSNSRDFEANAAAVVIILLCGLICALALNTAIRCFLRRRGSADNDPSDSRQEELPDETK 91
           PY    +F+AN   V+ +LLC L+C+L LN+ IRC LR    ++  PS++  +  P    
Sbjct: 45  PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALR---CSNLVPSEAGGDNYPVRLT 104

Query: 92  PTLVDKLKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQT 151
            T V +  +      S   +  L G++ EC ICL+EF   E +++L  C HGFHV+CI  
Sbjct: 105 NTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDK 164

Query: 152 WLILHSSCPTCR 164
           WL  HSSCPTCR
Sbjct: 165 WLSSHSSCPTCR 173

[Close]

BLAST of CcUC01G001310 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.8e-21
Identity = 62/144 (43.06%), Postives = 84/144 (58.33%), Query Frame = 0


Query: 35  NSRDFEANAAAVVIILLCGLICALALNTAIRCFLR--RRGSADNDPSD--SRQEELPDET 94
           N   F+ N   ++  LLC LICAL+LN+A+RC LR  RR ++D+  S+  +    L    
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 95  KPTLVDK--LKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLAICKHGFHVQC 154
             T + K  LK  P  ++   +    A    EC ICL +F +GE++RVL  C HGFHV+C
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKA---TECLICLGDFEDGEKVRVLPKCNHGFHVRC 144

Query: 155 IQTWLILHSSCPTCRRSYLPPSPS 173
           I TWL+  SSCPTCR+S L   PS
Sbjct: 145 IDTWLLSRSSCPTCRQSLLLEQPS 165

[Close]

BLAST of CcUC01G001310 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.5e-20
Identity = 55/136 (40.44%), Postives = 78/136 (57.35%), Query Frame = 0


Query: 35  NSRDFEANAAAVVIILLCGLICALALNTAIRC-FLRRRGSADNDPSDSRQEELPDETKPT 94
           +  +   N   ++ ILLCG+IC+L L+  IRC F+R R    +DP       +P   + +
Sbjct: 44  DKNNLSGNVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPI-----SIPSTPRDS 103

Query: 95  LVDK------LKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLAICKHGFHVQ 154
            V+K      LKM P + +S E+   L GV  EC ICL++F  GE++RVL  C HGFH++
Sbjct: 104 SVNKGIKKKALKMLPVVNYSPEI--NLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLR 163

Query: 155 CIQTWLILHSSCPTCR 164
           CI  WL  H +CP CR
Sbjct: 164 CIDKWLTQHMTCPKCR 172

[Close]

BLAST of CcUC01G001310 vs. ExPASy TrEMBL
Match: A0A0A0KNJ7 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G146260 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 168/182 (92.31%), Postives = 176/182 (96.70%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAAVVIILLCGLICALAL 60
           MRPTPLDADDT+RFQPPPSPPCHDLRACTWRPYS+SRDFEANAA VVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADNDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAE 120
           NTAIRCFLRRRG++D+D SDSRQEELP+ETKPTL+DKLKMAPALVFS EMKPKLAG EAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLMDKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSS SGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGDG 180

Query: 181 NP 183
           NP
Sbjct: 181 NP 182

[Close]

BLAST of CcUC01G001310 vs. ExPASy TrEMBL
Match: A0A5D3C3S3 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001240 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.2e-93
Identity = 168/182 (92.31%), Postives = 176/182 (96.70%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAAVVIILLCGLICALAL 60
           MRPTPLDAD+T+RFQPPPSPPCHDLRACTWRPYSNSRDFEANAA VVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADNDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAE 120
           NTAIRCFLRRRG++D+D +DSRQEEL +ETKPTLV+KLKMAPALVFS EMKPKLAG EAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSSVSGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180

Query: 181 NP 183
           NP
Sbjct: 181 NP 182

[Close]

BLAST of CcUC01G001310 vs. ExPASy TrEMBL
Match: A0A1S3AU49 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103482889 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.2e-93
Identity = 168/182 (92.31%), Postives = 176/182 (96.70%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAAVVIILLCGLICALAL 60
           MRPTPLDAD+T+RFQPPPSPPCHDLRACTWRPYSNSRDFEANAA VVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADNDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAE 120
           NTAIRCFLRRRG++D+D +DSRQEEL +ETKPTLV+KLKMAPALVFS EMKPKLAG EAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSSVSGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180

Query: 181 NP 183
           NP
Sbjct: 181 NP 182

[Close]

BLAST of CcUC01G001310 vs. ExPASy TrEMBL
Match: A0A6J1ELF7 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435709 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.8e-88
Identity = 163/182 (89.56%), Postives = 170/182 (93.41%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQ-PPPSPPCHDLRACTWRPYSNSRDFEANAAAVVIILLCGLICALA 60
           MRPTPLDADDT+ FQ PPP PPCHDLRACTWRPYSNSRDFEANAA VVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGSADNDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEA 120
           LNTAIRCFLRRRG AD +PSD+RQEEL DETKPTLVDKLKMAPALVFS E+KPKLAG EA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

Query: 181 GN 182
           G+
Sbjct: 181 GD 182

[Close]

BLAST of CcUC01G001310 vs. ExPASy TrEMBL
Match: A0A6J1I2W6 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469099 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.0e-88
Identity = 162/180 (90.00%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPP-PSPPCHDLRACTWRPYSNSRDFEANAAAVVIILLCGLICALA 60
           MRPTPLDADDT+ ++PP P PPCHDLRACTWRPYSNSRDFEANAA VVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSYRPPSPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGSADNDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEA 120
           LNTAIRCFLRRRG AD +PSD+RQEEL DETKPTLVDKLKMAPALVFSEEMKPKLAG EA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSEEMKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

[Close]

BLAST of CcUC01G001310 vs. TAIR 10
Match: AT5G47610.1 (RING/U-box superfamily protein )

HSP 1 Score: 134.8 bits (338), Expect = 6.9e-32
Identity = 74/161 (45.96%), Postives = 99/161 (61.49%), Query Frame = 0


Query: 19  SPPCHDLRACTWRPYSNSRDFEANAAAVVIILLCGLICALALNTAIRCFLRRRGSADNDP 78
           +P C+    C W+PYSNS DF ANA+ ++I+++  LICAL+L  AIRCFLR     ++D 
Sbjct: 17  TPTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETEDD- 76

Query: 79  SDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLA 138
                 E    + PT        P LV+S ++  +LAG EAEC ICL+EF +GE I+VL 
Sbjct: 77  -HKPDPEAAASSTPT-------TPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLE 136

Query: 139 ICKHGFHVQCIQTWLILHSSCPTCRRSYL---PPSPSSSVS 177
            C+HGFHV+CI  WL   SSCPTCR S       +PSS ++
Sbjct: 137 KCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSETPSSHIN 165

[Close]

BLAST of CcUC01G001310 vs. TAIR 10
Match: AT4G17245.1 (RING/U-box superfamily protein )

HSP 1 Score: 123.2 bits (308), Expect = 2.1e-28
Identity = 72/158 (45.57%), Postives = 88/158 (55.70%), Query Frame = 0


Query: 15  QPPPSPPCHDLRACTWRPYSNSRDFEANAAAVVIILLCGLICALALNTAIRCFLRRRGSA 74
           QP  +  C    +C W+PYS+S DF ANA  ++IIL C  IC L+L+ AIRC LR     
Sbjct: 10  QPELTSTCTS-HSCGWKPYSHSNDFAANAFLLLIILFCSFICVLSLHAAIRCCLRPVLQH 69

Query: 75  DNDPSDSRQEELPDETKPTLVDKLKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEI 134
              P    +   PD             P LV+S  +   LAG EAEC ICL+EF +G+ +
Sbjct: 70  VPKPDPDLEATHPD-----------APPTLVYSPGL--NLAGNEAECIICLSEFQDGDTL 129

Query: 135 RVLAICKHGFHVQCIQTWL-ILHSSCPTCRRSYLPPSP 172
           RVL  CKHGFHV CIQ WL   HSSCPTCR +     P
Sbjct: 130 RVLERCKHGFHVYCIQKWLSSSHSSCPTCRTNIFSSPP 153

[Close]

BLAST of CcUC01G001310 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-24
Identity = 67/152 (44.08%), Postives = 90/152 (59.21%), Query Frame = 0


Query: 34  SNSRDFEANAAAVVII---LLCGLICALALNTAIRCFLR--RRGSADNDPSDSRQEELPD 93
           SN+++  +    +VII   LLC LICAL +N+ +RC LR  RR + + DP D+      +
Sbjct: 29  SNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTN----AN 88

Query: 94  ETKPTLVDKLKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLAICKHGFHVQC 153
             K      LK+ P   +S E+K K      EC ICL +F EGE +RVL  C HGFHV+C
Sbjct: 89  VAKGIKKRALKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKC 148

Query: 154 IQTWLILHSSCPTCRRSYLP-PSPSSSVSGGD 180
           I TWL+ HSSCPTCR+S L   +P++    GD
Sbjct: 149 IDTWLLSHSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]

BLAST of CcUC01G001310 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-23
Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 0


Query: 32  PYSNSRDFEANAAAVVIILLCGLICALALNTAIRCFLRRRGSADNDPSDSRQEELPDETK 91
           PY    +F+AN   V+ +LLC L+C+L LN+ IRC LR    ++  PS++  +  P    
Sbjct: 45  PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALR---CSNLVPSEAGGDNYPVRLT 104

Query: 92  PTLVDKLKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQT 151
            T V +  +      S   +  L G++ EC ICL+EF   E +++L  C HGFHV+CI  
Sbjct: 105 NTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDK 164

Query: 152 WLILHSSCPTCR 164
           WL  HSSCPTCR
Sbjct: 165 WLSSHSSCPTCR 173

[Close]

BLAST of CcUC01G001310 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-22
Identity = 62/144 (43.06%), Postives = 84/144 (58.33%), Query Frame = 0


Query: 35  NSRDFEANAAAVVIILLCGLICALALNTAIRCFLR--RRGSADNDPSD--SRQEELPDET 94
           N   F+ N   ++  LLC LICAL+LN+A+RC LR  RR ++D+  S+  +    L    
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 95  KPTLVDK--LKMAPALVFSEEMKPKLAGVEAECTICLTEFSEGEEIRVLAICKHGFHVQC 154
             T + K  LK  P  ++   +    A    EC ICL +F +GE++RVL  C HGFHV+C
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKA---TECLICLGDFEDGEKVRVLPKCNHGFHVRC 144

Query: 155 IQTWLILHSSCPTCRRSYLPPSPS 173
           I TWL+  SSCPTCR+S L   PS
Sbjct: 145 IDTWLLSRSSCPTCRQSLLLEQPS 165

The following BLAST results are available for this feature:

BLAST of CcUC01G001310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145965.1	3.0e-93	92.31	RING-H2 finger protein ATL79 [Cucumis sativus] >KGN49952.1 hypothetical protein ...	[more]
XP_038875287.1	6.6e-93	93.92	RING-H2 finger protein ATL79-like [Benincasa hispida]	[more]
XP_008437481.1	8.6e-93	92.31	PREDICTED: RING-H2 finger protein ATL79-like [Cucumis melo] >KAA0042624.1 RING-H...	[more]
KAG7017072.1	3.7e-88	89.56	RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022928967.1	3.7e-88	89.56	RING-H2 finger protein ATL79-like [Cucurbita moschata] >KAG6579615.1 RING-H2 fin...	[more]

BLAST of CcUC01G001310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGJ6	9.7e-31	45.96	RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1	[more]
Q9FLC6	3.4e-23	44.08	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q6NQG7	2.2e-22	40.91	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
Q9SG96	1.8e-21	43.06	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9LS99	3.5e-20	40.44	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1	[more]

BLAST of CcUC01G001310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNJ7	1.4e-93	92.31	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G146260 PE...	[more]
A0A5D3C3S3	4.2e-93	92.31	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3AU49	4.2e-93	92.31	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103482889 PE=3 ...	[more]
A0A6J1ELF7	1.8e-88	89.56	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435709...	[more]
A0A6J1I2W6	4.0e-88	90.00	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469099 P...	[more]

BLAST of CcUC01G001310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47610.1	6.9e-32	45.96	RING/U-box superfamily protein	[more]
AT4G17245.1	2.1e-28	45.57	RING/U-box superfamily protein	[more]
AT5G05280.1	2.4e-24	44.08	RING/U-box superfamily protein	[more]
AT1G49230.1	1.5e-23	40.91	RING/U-box superfamily protein	[more]
AT3G10910.1	1.3e-22	43.06	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 121..162 e-value: 1.2E-5 score: 34.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 120..163 e-value: 2.4E-12 score: 47.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 121..163 score: 12.090947
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 79..168 e-value: 1.5E-19 score: 71.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..92
None	No IPR available	PANTHER	PTHR46905:SF1	RING-H2 FINGER PROTEIN ATL79-LIKE	coord: 15..176
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 120..169
IPR044602	RING-H2 finger protein ATL10/ATL75-79	PANTHER	PTHR46905	RING-H2 FINGER PROTEIN ATL78	coord: 15..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC01G001310.1	CcUC01G001310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity