CcUC01G000950 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC01G000950
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionTrafficking protein particle complex subunit
LocationCicolChr01: 682249 .. 686536 (-)
RNA-Seq ExpressionCcUC01G000950
SyntenyCcUC01G000950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCGAGCGCAGCGACTGATTAAAGAGAGAGCGATTTGCTTACAACACCTTTCACAAACGACGTTCATTCAATCTTTAATTGTCGGAAGCGTCTCCGGCGCCGTGAGGCTCCGATTTGCTGCCGTTGTCGCCGGCAATCATTGCCTGACGAATTAAGTGCCTCATCGTTGGATCTGATCGCTTCTTTTTATCTGCCGTCTCTGCTCTCTGAGGTATCTTTCTCGTTTCCGTTGTTTGATTTCGATGGTCCTTCTTGAATCTGTCGCCGTCCAGCTCATTACGGATTATCTCTCCATTTTCCCCTGCTCTTAGCCCCTTCTATGATCCATAAGTAAAATCCACTCTATATGCAATGTTCCTTTTACATTTCTTTTCACCGGAACTCTGTATGAATAGAACTCCCTATTTTACACTAGATTTGTTTCTCACTATATACAGTGGTTCTGTGGAGTGGCCAAAGAGAAATGCATCTGTGTTTTTTAGTCGAGTCATACAGATTCTTGCTTAACTGAATCCTGATTTGGGTCGGCTTAGATTTCACCTGTTGACGATTTGCTATTTTCTTTTTTAACCTCAATGAATAATAATAGGGATGGCTGAATTCTCAGTTGCTTTGCTAGGCAGCTGATCGTAGAGTTGAGTGAAAATGTTGGGGTTTTGTTAGAATCTTAGATTCGTAAACCATTTTTGTATGAACAATTGATTTGATTCCGTTTAGTTTATTCCAGAAACAATGCAGTTCTTTGGTGGGTCAGAGATTAGCCCTTCGCCTCCCGTACCGACAGCAACTGGAAACAATGTGCATATGATGTATATTTTCAATAGAAATGGAGTTTGCTTGTTCTACAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTCTGCTCTTCTCGCTTAAGTCCTTTACTGCCAAGATGGATCCAACCAGGTTTACGTTTCTTCCTTCCCTGAGAAACCACTTTGGCTTATGGTGTGCCTAGTTTAAGTAATGATCCAACAAGATAGGAGATTAATGCAAACTATAGTTTTAAGCCTTAATAACTTGACAAATGCATTGCTCTTTTATGGTCGGTGGCAATAACTAATAAGATGTCTAATTTGATTGTAGATTTTGATTTTGACTTTTCAAAGTATTAACTTACTGGAAAGTGATGAGTTGCTTTTGGGAGTTAGATTTTGAAGTGATAGCTTTCTTTTTACTTTTCTTTTATACAGTGCTGACAAAGGAAATCTTGGGGTTCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGCTTTCGTACTAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGGTTTCTTTAACCTTCTTTCTTCTGTTATTGTCTATATTTGCCATTGTAGGTTCATGCATGTGTACTTGAATTGTTAAGTTAAATAACTTGATATATGAATTATTGAGATTTAATGAAATCAATATTTGTTTTGTGTCATTGACATGTTTATTTATTGTTATTATCAATGTTATTTGACGAGGTAGATGGGAGTATTGAAGGGTTCTTTCCTCTCTGAACTTGTCACATAGATAACTTAAGTTTTAATTTGTAACCTCATGAAGAGTTCTTGCTTTTCTTTCTTGTTCTTAGAAAGTTCAGTTTCCTTGCTGATGATTAGTTCTTCCAATGAATCTTTTTCTTTTCTTTTTTTCTTTTGTTTTTCCTTCTTCTTTTCCTTCTTCTTGTTTTATTCTTGAAGAGTAAAAGTTGGACTTTTGGAAGAAGCCCTGTGAAGCTGCTGTTTTAAAATTGCTTCTATTTTGGAAAATAATTAACCAAAGGTGCAAAATGGGGATCCTTGCCACTGACTATAGGGTAAATTAGTTTGAACTTCAGTTTTGTGTGCATTGATGGATTATTTTCTTTGTTTTCAGATTATCCTGGTTACCCATCCTAGAACCGGTGATCTAAGGGACTCATTGAAATACATCTACAACTTGTATGTTGAATATGTAGTGAAAAATCCACTCTACAGTCCAGGAACACCAATCAGGTAAATTGTTTGGTTGATGCATATGTCCTGTATACCAACTGTAGTAATTTAACTCAGAAAATCTCAGTTTGAACCCTTGCAGAATAAAATCAATATCTTCGATGAATTTGAAGTTTGTTACACATGCACCCATTGGTTTCAATTTATAAAAGATCAAATGACGTCTGGATAAGGGAACTTATTATTGGTTCTGGACCTTAACTATACCTACTTTAAGTCTATGAGGCCTTTTCAGGAATCTTTTAGGCTTTACTAGATTCCACCTATAGACTAAATTACCACTTTTGTTCCTGGGTTGAGCTTGGTTTCAATTTAGTTCCTAGGATCTAACAAATTCTGTGTGATTACTATATGTTAGTAGTTTTCTTACTTCACACACTTCCTTATTTATTTTGTTTTCTTTAATTTAATTTTTTTTCCTTTTTTCATTTTTAACATGGAAAAGAGAGAACGAGTTCCCTTTAAGCATAAGGCATGGGTAAATGTTTGTTTGTTTGTTTTTTTGGATAAGAAACATTACATTGATGAATGAAATGAATTAGGGAAAAAAATAAAAGAAATTGGGTGGGTGTTCAGATAAGATGAAACAAATTTGTCTAATGAAGGGTTTGATTTTGGGGTCTAGGGTTTTAGATTTATGATGAAAAGGTTGGCTTCAGAACTTGTTTTCCTCTATTTCTGATATGACCCAACTAATCCATAATTCAATAAACAATTTAACCTTTAGATGTACCTTATAGTGAATGGTAGCACATCGTCCTTCTTTTTCACTTCCAAAGAAGAAGAATTATGTAAGAAAACTATTAGCACCTAAGAATGGAATGTACATTTTTGGGAGATTTAACTAAGCTATAGGAACTATAATGAAATTTTAAAACCATTTAGTCCAACTTGAAACCAAACTCAAACTATATGGACTGAAATGTTAAGTTAATCCTTTTATCAGAAAGTATTAAGTGGGTGAATATCCGTTTAGTTCTCCTGTTTAGTATTTTTAACTAAAGATTTGAAATGTTTCAAAATCTTATTTATGGACTTAACCGTACCTCAAATAATTCATGCTTGCTATGATATTGTTCTTGTGATGAAAATAAAGTTAATTCTTGTTTGTCCTGGCAACACAATATCCACTCTCCCTTGATTTTGCTTTCTGCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGAAGTATATTGTAGAAATCAGAGATAGTGACTGCTCTGCCGTTTTAGTTTCATTCAATTTGTATGTTTGTCTGTCTTTTGTCGATGAATGAATGCGATTCACTGGATGTGGTGCAGTTTCAGGCTGTTAAAATGCCTACCTGGGAGTTTCTTTTTGTTTTCTATTGGTTCCTGTAGAGAGTGCACCCGTATGAATTATTCTAGTTTATCCTTTTCCTTTCCCCCTTTTTTCTCCCAGTATTTTGTGGTAACTTCTCTGTGATAGTGGTGAAGAAAAAGAAAGAAAAAAGATTCTAGTATAAATTTTGCTGCTCATGTATAATTTTTAGTAATGCATTCTATATTTCTTGTTTTATTTACACACGTACCATGATTAGGCTTTCTTTGTGTAAAAATGTGAAATGTTTCAAATGGGAGAGGATTATGTTCAATGACCTTCTTGACCTCTTCCGCCTTTCCATGGTCTCTTCATCAATTTATTGGTATATGTTTCAACCCTAGGATCCACCCATCATAATGTAGGAAGGTTGATAGGCTCAACCTATGAAAGGATGCGTTGTAGCTATGGCTGGCTCCCAAAAGGGAATTTCCCTAGAATTTCTTTCAATGGATGCTTATACTGAAAGAAGATTAGACAAACTCTAGGTTTCCACTGCTTTGATTCCCGATGTCTAGCCAATTAAAATTCTTGCTTGCTTGGTATGTGCGATTGTGCGCTCAGCATAATCGTGTTGCTGTTTCTTTCTTCCGCAGATGCTACGAAGCTCTTTCTCTAATCTCTCCTCGCTTCGAGCAAGGTCGGAGCCTTTATTATTTACCCTTGGCTCAGTCTATCCTTACTTCCCAAGGTCGAAGGACGAAAAATATCATTGAATCTGGTTGGAGGATCTCCATATGGCTTCACAGGTCAGAAAATCTTTCCATTGTATGAGTACTTGTGATCCATTTTCAGGAAGGTAGTTGGTGGGTTGAACCTGAAACCTTCACCTGTTTTAACTAGAAATATGTCTCATGATACAGTTGTGGATTGTAGTGAGGGATAA

mRNA sequence

TCCGAGCGCAGCGACTGATTAAAGAGAGAGCGATTTGCTTACAACACCTTTCACAAACGACGTTCATTCAATCTTTAATTGTCGGAAGCGTCTCCGGCGCCGTGAGGCTCCGATTTGCTGCCGTTGTCGCCGGCAATCATTGCCTGACGAATTAAGTGCCTCATCGTTGGATCTGATCGCTTCTTTTTATCTGCCGTCTCTGCTCTCTGAGAAACAATGCAGTTCTTTGGTGGGTCAGAGATTAGCCCTTCGCCTCCCGTACCGACAGCAACTGGAAACAATGTGCATATGATGTATATTTTCAATAGAAATGGAGTTTGCTTGTTCTACAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTCTGCTCTTCTCGCTTAAGTCCTTTACTGCCAAGATGGATCCAACCAGTGCTGACAAAGGAAATCTTGGGGTTCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGCTTTCGTACTAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGATTATCCTGGTTACCCATCCTAGAACCGGTGATCTAAGGGACTCATTGAAATACATCTACAACTTGTATGTTGAATATGTAGTGAAAAATCCACTCTACAGTCCAGGAACACCAATCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATATGCTACGAAGCTCTTTCTCTAATCTCTCCTCGCTTCGAGCAAGGTCGGAGCCTTTATTATTTACCCTTGGCTCAGTCTATCCTTACTTCCCAAGGAAGGTAGTTGGTGGGTTGAACCTGAAACCTTCACCTGTTTTAACTAGAAATATGTCTCATGATACAGTTGTGGATTGTAGTGAGGGATAA

Coding sequence (CDS)

ATGCAGTTCTTTGGTGGGTCAGAGATTAGCCCTTCGCCTCCCGTACCGACAGCAACTGGAAACAATGTGCATATGATGTATATTTTCAATAGAAATGGAGTTTGCTTGTTCTACAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTCTGCTCTTCTCGCTTAAGTCCTTTACTGCCAAGATGGATCCAACCAGTGCTGACAAAGGAAATCTTGGGGTTCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGCTTTCGTACTAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGATTATCCTGGTTACCCATCCTAGAACCGGTGATCTAAGGGACTCATTGAAATACATCTACAACTTGTATGTTGAATATGTAGTGAAAAATCCACTCTACAGTCCAGGAACACCAATCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATATGCTACGAAGCTCTTTCTCTAATCTCTCCTCGCTTCGAGCAAGGTCGGAGCCTTTATTATTTACCCTTGGCTCAGTCTATCCTTACTTCCCAAGGAAGGTAGTTGGTGGGTTGAACCTGAAACCTTCACCTGTTTTAACTAGAAATATGTCTCATGATACAGTTGTGGATTGTAGTGAGGGATAA

Protein sequence

MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYMLRSSFSNLSSLRARSEPLLFTLGSVYPYFPRKVVGGLNLKPSPVLTRNMSHDTVVDCSEG
Homology
[Close]
BLAST of CcUC01G000950 vs. NCBI nr
Match: XP_038906999.1 (trafficking protein particle complex subunit 1 [Benincasa hispida] >XP_038907000.1 trafficking protein particle complex subunit 1 [Benincasa hispida])

HSP 1 Score: 350.1 bits (897), Expect = 1.4e-92
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPT TGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTTTGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYM 166
           RTGDLRDSLKYIYNLYVEYVVKNP+YSPGTPIRCELFNTSLDQY+
Sbjct: 121 RTGDLRDSLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYV 165

[Close]
BLAST of CcUC01G000950 vs. NCBI nr
Match: XP_004145907.1 (trafficking protein particle complex subunit 1 [Cucumis sativus] >XP_031741655.1 trafficking protein particle complex subunit 1 [Cucumis sativus] >KGN49914.1 hypothetical protein Csa_000153 [Cucumis sativus])

HSP 1 Score: 349.7 bits (896), Expect = 1.8e-92
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYM 166
           RTGDLRD LKYIYNLYVEYVVKNP+YSPGTPIRCELFNTSLDQY+
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYV 165

[Close]
BLAST of CcUC01G000950 vs. NCBI nr
Match: KAA0042588.1 (trafficking protein particle complex subunit 1 [Cucumis melo var. makuwa] >TYK05991.1 trafficking protein particle complex subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 349.4 bits (895), Expect = 2.4e-92
Identity = 162/165 (98.18%), Postives = 163/165 (98.79%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYM 166
           RTGDLRD LKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQY+
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYL 165

[Close]
BLAST of CcUC01G000950 vs. NCBI nr
Match: XP_008437540.1 (PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo] >XP_008437541.1 PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo])

HSP 1 Score: 349.0 bits (894), Expect = 3.1e-92
Identity = 162/165 (98.18%), Postives = 163/165 (98.79%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYM 166
           RTGDLRD LKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQY+
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYV 165

[Close]
BLAST of CcUC01G000950 vs. NCBI nr
Match: XP_022159770.1 (trafficking protein particle complex subunit 1 [Momordica charantia] >XP_022159771.1 trafficking protein particle complex subunit 1 [Momordica charantia] >XP_022159772.1 trafficking protein particle complex subunit 1 [Momordica charantia] >XP_022159773.1 trafficking protein particle complex subunit 1 [Momordica charantia] >XP_022159774.1 trafficking protein particle complex subunit 1 [Momordica charantia])

HSP 1 Score: 345.9 bits (886), Expect = 2.6e-91
Identity = 160/165 (96.97%), Postives = 162/165 (98.18%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPP PTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSL+SFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYM 166
           RT DLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQY+
Sbjct: 121 RTSDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYV 165

[Close]
BLAST of CcUC01G000950 vs. ExPASy Swiss-Prot
Match: Q557G3 (Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum OX=44689 GN=trappc1-1 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.0e-29
Identity = 61/152 (40.13%), Postives = 96/152 (63.16%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLG 82
           ++ +YIFN++G C++Y +WN+  ++ N  +D KL+FG+L+SLK+F     P   D     
Sbjct: 2   IYNIYIFNKDGTCIYYEDWNKKKQSQNQSEDQKLLFGMLYSLKAFITSSSPKKID----- 61

Query: 83  VPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYVV 142
                     FH ++T+TYKL + ET S IK I+++ P   DLRD LK IY+ ++VEYV+
Sbjct: 62  ------DKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVI 121

Query: 143 KNPLYSPGTPIRCELFNTSLDQYMLR-SSFSN 173
           KNP+Y  GT ++C+ F   L+ Y+ +  SFS+
Sbjct: 122 KNPIYKHGTTVKCDTFINQLNLYLKQMPSFSS 142

[Close]
BLAST of CcUC01G000950 vs. ExPASy Swiss-Prot
Match: Q5NCF2 (Trafficking protein particle complex subunit 1 OS=Mus musculus OX=10090 GN=Trappc1 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.6e-29
Identity = 65/145 (44.83%), Postives = 94/145 (64.83%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYV 142
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+V
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 143 VKNPLYSPGTPIRCELFNTSLDQYM 166
           VKNPL   G  ++ ELF + LD Y+
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYV 134

[Close]
BLAST of CcUC01G000950 vs. ExPASy Swiss-Prot
Match: Q2KMM2 (Trafficking protein particle complex subunit 1 OS=Rattus norvegicus OX=10116 GN=Trappc1 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.6e-29
Identity = 65/145 (44.83%), Postives = 94/145 (64.83%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYV 142
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+V
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 143 VKNPLYSPGTPIRCELFNTSLDQYM 166
           VKNPL   G  ++ ELF + LD Y+
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYV 134

[Close]
BLAST of CcUC01G000950 vs. ExPASy Swiss-Prot
Match: Q17QI1 (Trafficking protein particle complex subunit 1 OS=Bos taurus OX=9913 GN=TRAPPC1 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.3e-28
Identity = 64/145 (44.14%), Postives = 93/145 (64.14%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYV 142
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE V
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 143 VKNPLYSPGTPIRCELFNTSLDQYM 166
           VKNPL   G  ++ ELF + LD Y+
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYV 134

[Close]
BLAST of CcUC01G000950 vs. ExPASy Swiss-Prot
Match: Q9Y5R8 (Trafficking protein particle complex subunit 1 OS=Homo sapiens OX=9606 GN=TRAPPC1 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.3e-28
Identity = 64/145 (44.14%), Postives = 93/145 (64.14%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYV 142
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE V
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 143 VKNPLYSPGTPIRCELFNTSLDQYM 166
           VKNPL   G  ++ ELF + LD Y+
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYV 134

[Close]
BLAST of CcUC01G000950 vs. ExPASy TrEMBL
Match: A0A0A0KM26 (Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_5G139910 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 8.8e-93
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYM 166
           RTGDLRD LKYIYNLYVEYVVKNP+YSPGTPIRCELFNTSLDQY+
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYV 165

[Close]
BLAST of CcUC01G000950 vs. ExPASy TrEMBL
Match: A0A5D3C227 (Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00870 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.1e-92
Identity = 162/165 (98.18%), Postives = 163/165 (98.79%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYM 166
           RTGDLRD LKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQY+
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYL 165

[Close]
BLAST of CcUC01G000950 vs. ExPASy TrEMBL
Match: A0A1S3AUA1 (Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC103482924 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.5e-92
Identity = 162/165 (98.18%), Postives = 163/165 (98.79%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYM 166
           RTGDLRD LKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQY+
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYV 165

[Close]
BLAST of CcUC01G000950 vs. ExPASy TrEMBL
Match: A0A6J1DZQ0 (Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=LOC111026095 PE=3 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.3e-91
Identity = 160/165 (96.97%), Postives = 162/165 (98.18%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPP PTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSL+SFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYM 166
           RT DLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQY+
Sbjct: 121 RTSDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYV 165

[Close]
BLAST of CcUC01G000950 vs. ExPASy TrEMBL
Match: A0A6J1IAE9 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111471566 PE=3 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.8e-91
Identity = 161/165 (97.58%), Postives = 164/165 (99.39%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPTATGNNV+MMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYM 166
           RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELF+TSLDQY+
Sbjct: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYV 165

[Close]
BLAST of CcUC01G000950 vs. TAIR 10
Match: AT1G51160.1 (SNARE-like superfamily protein )

HSP 1 Score: 322.8 bits (826), Expect = 2.2e-88
Identity = 146/165 (88.48%), Postives = 158/165 (95.76%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTA+GNN HMMY+FNRNGVCL Y+EWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDP +ADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYM 166
           +TGDLR+SLKYIY+LYVEYVVKNP+YSPG+PI+ ELFNT+LDQY+
Sbjct: 121 KTGDLRESLKYIYSLYVEYVVKNPIYSPGSPIKSELFNTALDQYV 165

[Close]
BLAST of CcUC01G000950 vs. TAIR 10
Match: AT1G51160.2 (SNARE-like superfamily protein )

HSP 1 Score: 322.8 bits (826), Expect = 2.2e-88
Identity = 146/165 (88.48%), Postives = 158/165 (95.76%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTA+GNN HMMY+FNRNGVCL Y+EWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDP +ADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYM 166
           +TGDLR+SLKYIY+LYVEYVVKNP+YSPG+PI+ ELFNT+LDQY+
Sbjct: 121 KTGDLRESLKYIYSLYVEYVVKNPIYSPGSPIKSELFNTALDQYV 165

[Close]
BLAST of CcUC01G000950 vs. TAIR 10
Match: AT5G02280.1 (SNARE-like superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-13
Identity = 42/142 (29.58%), Postives = 68/142 (47.89%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLG 82
           ++ +YI N++G  +FY++     R      D   +  L  S+ + + ++ P +       
Sbjct: 4   IYSLYIINKSGGLIFYKDCGTKGRM--DTNDSLRVASLWHSMHAISQQLSPVN------- 63

Query: 83  VPQLPGQGCS-FHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVV 142
                  GCS       +T+ L   ++  G K  +V  P T  +   L+YIY LY +YV+
Sbjct: 64  -------GCSGIELLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVL 123

Query: 143 KNPLYSPGTPIRCELFNTSLDQ 164
           KNP Y    PIRCELF+ +L Q
Sbjct: 124 KNPFYEIEMPIRCELFDINLTQ 129

The following BLAST results are available for this feature:
BLAST of CcUC01G000950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038906999.11.4e-9298.18trafficking protein particle complex subunit 1 [Benincasa hispida] >XP_038907000... [more]
XP_004145907.11.8e-9298.18trafficking protein particle complex subunit 1 [Cucumis sativus] >XP_031741655.1... [more]
KAA0042588.12.4e-9298.18trafficking protein particle complex subunit 1 [Cucumis melo var. makuwa] >TYK05... [more]
XP_008437540.13.1e-9298.18PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo] >XP_008... [more]
XP_022159770.12.6e-9196.97trafficking protein particle complex subunit 1 [Momordica charantia] >XP_0221597... [more]
BLAST of CcUC01G000950 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q557G31.0e-2940.13Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum OX=44... [more]
Q5NCF26.6e-2944.83Trafficking protein particle complex subunit 1 OS=Mus musculus OX=10090 GN=Trapp... [more]
Q2KMM26.6e-2944.83Trafficking protein particle complex subunit 1 OS=Rattus norvegicus OX=10116 GN=... [more]
Q17QI14.3e-2844.14Trafficking protein particle complex subunit 1 OS=Bos taurus OX=9913 GN=TRAPPC1 ... [more]
Q9Y5R84.3e-2844.14Trafficking protein particle complex subunit 1 OS=Homo sapiens OX=9606 GN=TRAPPC... [more]
BLAST of CcUC01G000950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KM268.8e-9398.18Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_5... [more]
A0A5D3C2271.1e-9298.18Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194... [more]
A0A1S3AUA11.5e-9298.18Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC10348... [more]
A0A6J1DZQ01.3e-9196.97Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1IAE92.8e-9197.58Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
BLAST of CcUC01G000950 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G51160.12.2e-8888.48SNARE-like superfamily protein [more]
AT1G51160.22.2e-8888.48SNARE-like superfamily protein [more]
AT5G02280.11.4e-1329.58SNARE-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007233Trafficking protein particle complex subunitSMARTSM01399Sybindin_2coord: 23..168
e-value: 3.4E-63
score: 225.9
IPR007233Trafficking protein particle complex subunitPFAMPF04099Sybindincoord: 23..165
e-value: 3.0E-48
score: 163.4
IPR007233Trafficking protein particle complex subunitPANTHERPTHR23249TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNITcoord: 1..165
NoneNo IPR availableGENE3D3.30.450.70coord: 22..174
e-value: 1.1E-47
score: 163.6
NoneNo IPR availablePANTHERPTHR23249:SF18TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1-LIKEcoord: 1..165
NoneNo IPR availableCDDcd14855TRAPPC1_MUM2coord: 24..164
e-value: 2.07131E-69
score: 207.014
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 23..165

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC01G000950.1CcUC01G000950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0030008 TRAPP complex