Carg28283 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28283
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RPM1-interacting protein 4-like
Location	Carg_Chr18: 4462656 .. 4463315 (+)
RNA-Seq Expression	Carg28283
Synteny	Carg28283

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTGAGTGTTTTTCTTTTTTTTTCATCTAAAATTAATTCATAGATTATTAGAAACTAATTTTTTTTATTCATATGGTAGGGGGCAAACTCGTCATTTCATGTTCCCAAATTCGGTAATTGGGACACCGACGATGTACCCTACACCATCTGTTTCGAAAACGCCCGAGAACTCCGAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCACCGGAGGTCTTCAAGCCAGTCGCACACGACGGCGGAGAACACCAGCGGCGGCCACGCCAACAGCCAAATCGCGAGCGGGGAGCGGTAATAAACTCCGGATCGGAGAAATTGAGCAGCGAGAGAAGCGGCTCCGATTACGCTCTTCTGAAGAAGAGTAAGGAAAATGGAGTGGAAGGAATCAGTAGATTAGCTCCGGCGGTGGCCGGACATGGCGGAAACCCGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAGGGATCCGAAATCGGGAGATGGGTATACGGCGATTTTCAATAAAATGAAGATTGAGAAGCAAATTGCAGCTTCAAATCCTCAGGCAGTTCCGCCATTGATGAACAAAACCAAGCAACCCATAGCTCACACGAACACTACTAGTGGATTCACTTCATTTGCTTCCAAGGTACCCACCTAA

mRNA sequence

ATGGCAGGGGCAAACTCGTCATTTCATGTTCCCAAATTCGGTAATTGGGACACCGACGATGTACCCTACACCATCTGTTTCGAAAACGCCCGAGAACTCCGAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCACCGGAGGTCTTCAAGCCAGTCGCACACGACGGCGGAGAACACCAGCGGCGGCCACGCCAACAGCCAAATCGCGAGCGGGGAGCGGTAATAAACTCCGGATCGGAGAAATTGAGCAGCGAGAGAAGCGGCTCCGATTACGCTCTTCTGAAGAAGAGTAAGGAAAATGGAGTGGAAGGAATCAGTAGATTAGCTCCGGCGGTGGCCGGACATGGCGGAAACCCGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAGGGATCCGAAATCGGGAGATGGGTATACGGCGATTTTCAATAAAATGAAGATTGAGAAGCAAATTGCAGCTTCAAATCCTCAGGCAGTTCCGCCATTGATGAACAAAACCAAGCAACCCATAGCTCACACGAACACTACTAGTGGATTCACTTCATTTGCTTCCAAGGTACCCACCTAA

Coding sequence (CDS)

ATGGCAGGGGCAAACTCGTCATTTCATGTTCCCAAATTCGGTAATTGGGACACCGACGATGTACCCTACACCATCTGTTTCGAAAACGCCCGAGAACTCCGAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCACCGGAGGTCTTCAAGCCAGTCGCACACGACGGCGGAGAACACCAGCGGCGGCCACGCCAACAGCCAAATCGCGAGCGGGGAGCGGTAATAAACTCCGGATCGGAGAAATTGAGCAGCGAGAGAAGCGGCTCCGATTACGCTCTTCTGAAGAAGAGTAAGGAAAATGGAGTGGAAGGAATCAGTAGATTAGCTCCGGCGGTGGCCGGACATGGCGGAAACCCGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGCGAGGGATCCGAAATCGGGAGATGGGTATACGGCGATTTTCAATAAAATGAAGATTGAGAAGCAAATTGCAGCTTCAAATCCTCAGGCAGTTCCGCCATTGATGAACAAAACCAAGCAACCCATAGCTCACACGAACACTACTAGTGGATTCACTTCATTTGCTTCCAAGGTACCCACCTAA

Protein sequence

MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDGGEHQRRPRQQPNRERGAVINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHGGNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIAHTNTTSGFTSFASKVPT

Homology

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BLAST of Carg28283 vs. NCBI nr
Match: KAG6573489.1 (RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012628.1 RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 394.4 bits (1012), Expect = 5.5e-106
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG
Sbjct: 1   MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60

Query: 61  GEHQRRPRQQPNRERGAVINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGAVINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAVINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIAHTNT 180
           GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIAHTNT
Sbjct: 121 GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIAHTNT 180

Query: 181 TSGFTSFASKVPT 194
           TSGFTSFASKVPT
Sbjct: 181 TSGFTSFASKVPT 193

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BLAST of Carg28283 vs. NCBI nr
Match: XP_022955116.1 (RPM1-interacting protein 4-like [Cucurbita moschata])

HSP 1 Score: 386.0 bits (990), Expect = 2.0e-103
Identity = 187/191 (97.91%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 1   MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAGA SSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG
Sbjct: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60

Query: 61  GEHQRRPRQQPNRERGAVINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGA+INSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIAHTNT 180
           GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQ+VPPLMNKTKQPIAHTNT
Sbjct: 121 GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQSVPPLMNKTKQPIAHTNT 180

Query: 181 TSGFTSFASKV 192
           TSGFTSFASK+
Sbjct: 181 TSGFTSFASKI 191

[Close]

BLAST of Carg28283 vs. NCBI nr
Match: XP_023525812.1 (RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.4 bits (986), Expect = 5.7e-103
Identity = 186/191 (97.38%), Postives = 189/191 (98.95%), Query Frame = 0


Query: 1   MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGI FDPNDPDTYPPEVFKP AHDG
Sbjct: 1   MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGINFDPNDPDTYPPEVFKPAAHDG 60

Query: 61  GEHQRRPRQQPNRERGAVINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGA+INSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIAHTNT 180
           GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNK+KQPIAHTNT
Sbjct: 121 GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKSKQPIAHTNT 180

Query: 181 TSGFTSFASKV 192
           TSGFTSFASK+
Sbjct: 181 TSGFTSFASKI 191

[Close]

BLAST of Carg28283 vs. NCBI nr
Match: XP_022994302.1 (RPM1-interacting protein 4-like [Cucurbita maxima])

HSP 1 Score: 370.2 bits (949), Expect = 1.1e-98
Identity = 182/195 (93.33%), Postives = 188/195 (96.41%), Query Frame = 0


Query: 1   MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAGANSS HVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKP AH+G
Sbjct: 1   MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNG 60

Query: 61  GEHQRRPRQQPNRERGAVINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGA++NSGSEKLSSERSGS+YALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 GNP----ASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA 180
            NP    ASVPKFGSWDA+DPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA
Sbjct: 121 VNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA 180

Query: 181 HTNTTSGFTSFASKV 192
           HTNTTSGFTSFASK+
Sbjct: 181 HTNTTSGFTSFASKI 195

[Close]

BLAST of Carg28283 vs. NCBI nr
Match: XP_022142617.1 (RPM1-interacting protein 4-like [Momordica charantia])

HSP 1 Score: 248.4 bits (633), Expect = 4.9e-62
Identity = 141/218 (64.68%), Postives = 152/218 (69.72%), Query Frame = 0


Query: 4   ANSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDGG-- 63
           A SS HVPKFGNWDTDDVPYTICFENA ELRAAG+TFDPNDPDTYPPE F    H     
Sbjct: 3   AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPS 62

Query: 64  ------EHQRRPRQQPNRERGAVINSGSEKLSSERSGSDYALLK------KSKENGVEGI 123
                 +H RRPR+QPNR+R    +SGSEKLSSERSGSDY+LLK      K   NGV+GI
Sbjct: 63  DRRRHHDHHRRPREQPNRDRR---SSGSEKLSSERSGSDYSLLKEPGGRRKKINNGVDGI 122

Query: 124 SRLAPAVAGHGGNP--------------ASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQ 183
           SR  P  AGHGGNP              ASVPKFGSWDARDPKSGDGYTAIFNK+K+EK+
Sbjct: 123 SRFPPTAAGHGGNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKMEKK 182

Query: 184 IAASN-PQAVPPLMNKTK-QPIAHTNTTSGFTSFASKV 192
           I  SN  QAVPPL N+TK QPI       G TSF SKV
Sbjct: 183 IGGSNSSQAVPPLTNQTKQQPI--PQIVHGSTSFVSKV 215

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BLAST of Carg28283 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.2e-12
Identity = 69/208 (33.17%), Postives = 93/208 (44.71%), Query Frame = 0


Query: 9   HVPKFGNWDTDD-VPYTICFENARELRAAGI-TFDPNDPD----------TYPPEV-FKP 68
           +VPKFGNW+ ++ VPYT  F+ AR+ RA G    +PNDP+           +PP    KP
Sbjct: 5   NVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTKP 64

Query: 69  VAHD----GGEHQRRPRQQPNRERGAVINSGSE-------KLSSERSGSDYALLKKSKEN 128
              D      EH R   +   ++ G    S +E       + S   S  + + L K+  +
Sbjct: 65  EQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYDNKSPLHKNSYD 124

Query: 129 GVEGISRLAPAVAGHGGNPAS---VPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAA--S 188
           G  G SR  P       +P     VPKFG WD  +P S DGYT IFNK++ E+   A  S
Sbjct: 125 GT-GKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVS 184

[Close]

BLAST of Carg28283 vs. ExPASy Swiss-Prot
Match: Q8S3M3 (NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.5e-05
Identity = 21/59 (35.59%), Postives = 30/59 (50.85%), Query Frame = 0


Query: 9  HVPKFGNWDTDDVPYTICFENARELRAAGI-TFDPNDPDTYPPEVFKPVAHDGGEHQRR 67
          HVPKFGNWD +++ YT  FE     +  G   F+PNDP+  P   +        +H  +
Sbjct: 6  HVPKFGNWDGENISYTTYFETVHRDKGDGSKIFNPNDPEENPQAFYPRTVAQDHQHSEK 64

[Close]

BLAST of Carg28283 vs. ExPASy TrEMBL
Match: A0A6J1GSU2 (RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111457178 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 9.5e-104
Identity = 187/191 (97.91%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 1   MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAGA SSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG
Sbjct: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60

Query: 61  GEHQRRPRQQPNRERGAVINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGA+INSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIAHTNT 180
           GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQ+VPPLMNKTKQPIAHTNT
Sbjct: 121 GNPASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQSVPPLMNKTKQPIAHTNT 180

Query: 181 TSGFTSFASKV 192
           TSGFTSFASK+
Sbjct: 181 TSGFTSFASKI 191

[Close]

BLAST of Carg28283 vs. ExPASy TrEMBL
Match: A0A6J1JVE9 (RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111490070 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.4e-99
Identity = 182/195 (93.33%), Postives = 188/195 (96.41%), Query Frame = 0


Query: 1   MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAGANSS HVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKP AH+G
Sbjct: 1   MAGANSSIHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPAAHNG 60

Query: 61  GEHQRRPRQQPNRERGAVINSGSEKLSSERSGSDYALLKKSKENGVEGISRLAPAVAGHG 120
           GEHQRRPRQQPNRERGA++NSGSEKLSSERSGS+YALLKKSKENGVEGISRLAPAVAGHG
Sbjct: 61  GEHQRRPRQQPNRERGAIMNSGSEKLSSERSGSNYALLKKSKENGVEGISRLAPAVAGHG 120

Query: 121 GNP----ASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA 180
            NP    ASVPKFGSWDA+DPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA
Sbjct: 121 VNPKPVTASVPKFGSWDAKDPKSGDGYTAIFNKMKIEKQIAASNPQAVPPLMNKTKQPIA 180

Query: 181 HTNTTSGFTSFASKV 192
           HTNTTSGFTSFASK+
Sbjct: 181 HTNTTSGFTSFASKI 195

[Close]

BLAST of Carg28283 vs. ExPASy TrEMBL
Match: A0A6J1CND0 (RPM1-interacting protein 4-like OS=Momordica charantia OX=3673 GN=LOC111012692 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.4e-62
Identity = 141/218 (64.68%), Postives = 152/218 (69.72%), Query Frame = 0


Query: 4   ANSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDGG-- 63
           A SS HVPKFGNWDTDDVPYTICFENA ELRAAG+TFDPNDPDTYPPE F    H     
Sbjct: 3   AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPS 62

Query: 64  ------EHQRRPRQQPNRERGAVINSGSEKLSSERSGSDYALLK------KSKENGVEGI 123
                 +H RRPR+QPNR+R    +SGSEKLSSERSGSDY+LLK      K   NGV+GI
Sbjct: 63  DRRRHHDHHRRPREQPNRDRR---SSGSEKLSSERSGSDYSLLKEPGGRRKKINNGVDGI 122

Query: 124 SRLAPAVAGHGGNP--------------ASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQ 183
           SR  P  AGHGGNP              ASVPKFGSWDARDPKSGDGYTAIFNK+K+EK+
Sbjct: 123 SRFPPTAAGHGGNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKMEKK 182

Query: 184 IAASN-PQAVPPLMNKTK-QPIAHTNTTSGFTSFASKV 192
           I  SN  QAVPPL N+TK QPI       G TSF SKV
Sbjct: 183 IGGSNSSQAVPPLTNQTKQQPI--PQIVHGSTSFVSKV 215

[Close]

BLAST of Carg28283 vs. ExPASy TrEMBL
Match: A0A5A7UH42 (RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001090 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.9e-59
Identity = 131/216 (60.65%), Postives = 146/216 (67.59%), Query Frame = 0


Query: 1   MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAG  SS HVPKFGNWD+DDVPYTI FENAREL+AAG+TFDPNDPDTYPP VF       
Sbjct: 1   MAGTKSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVFANQNSIP 60

Query: 61  GEHQRRPRQQPNRERGAVINSGSEKLSSERSGSDYALL-------KKSKENGVEGISRLA 120
            +H R    + + +R  ++NSGSEKLSSERS SDYALL       KK   NG EG+SR +
Sbjct: 61  ADHHRHHDGEDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PAVAGHGGN-------------PASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAAS- 180
           P      GN              ASVPKFGSWD RDPKSGDGYTAIFNK+KIEKQI  S 
Sbjct: 121 PTTVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQIGGSN 180

Query: 181 NPQAVPPLMNKTKQPIAHT----NTTSGFTSFASKV 192
           NPQ VPPLMN+TKQP+  T     +T G TSF SKV
Sbjct: 181 NPQTVPPLMNQTKQPMTQTTVAKTSTQGSTSFVSKV 216

[Close]

BLAST of Carg28283 vs. ExPASy TrEMBL
Match: A0A1S3C9P5 (RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103498234 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 2.5e-59
Identity = 130/216 (60.19%), Postives = 146/216 (67.59%), Query Frame = 0


Query: 1   MAGANSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60
           MAG  SS HVPKFGNWD+DDVPYTI FENAREL+AAG+TFDPNDPDTYPP VF       
Sbjct: 1   MAGTKSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVFANQNSIP 60

Query: 61  GEHQRRPRQQPNRERGAVINSGSEKLSSERSGSDYALL-------KKSKENGVEGISRLA 120
            +H R    + + +R  ++NSGSEKLSSERS SDYALL       KK   NG EG+SR +
Sbjct: 61  ADHHRHHDGEDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PAVAGHGGN-------------PASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAAS- 180
           P      GN              ASVPKFGSWD RDPKSGDGYTAIFNK+KIEKQI  S 
Sbjct: 121 PTTVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQIGGSN 180

Query: 181 NPQAVPPLMNKTKQPIAHT----NTTSGFTSFASKV 192
           NPQ VPPLMN+TKQP+  T     +T G TSF SK+
Sbjct: 181 NPQTVPPLMNQTKQPMTQTTVAKTSTQGSTSFVSKI 216

[Close]

BLAST of Carg28283 vs. TAIR 10
Match: AT3G25070.1 (RPM1 interacting protein 4 )

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-13
Identity = 69/208 (33.17%), Postives = 93/208 (44.71%), Query Frame = 0


Query: 9   HVPKFGNWDTDD-VPYTICFENARELRAAGI-TFDPNDPD----------TYPPEV-FKP 68
           +VPKFGNW+ ++ VPYT  F+ AR+ RA G    +PNDP+           +PP    KP
Sbjct: 5   NVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTKP 64

Query: 69  VAHD----GGEHQRRPRQQPNRERGAVINSGSE-------KLSSERSGSDYALLKKSKEN 128
              D      EH R   +   ++ G    S +E       + S   S  + + L K+  +
Sbjct: 65  EQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYDNKSPLHKNSYD 124

Query: 129 GVEGISRLAPAVAGHGGNPAS---VPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAA--S 188
           G  G SR  P       +P     VPKFG WD  +P S DGYT IFNK++ E+   A  S
Sbjct: 125 GT-GKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVS 184

[Close]

BLAST of Carg28283 vs. TAIR 10
Match: AT3G07195.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-05
Identity = 53/184 (28.80%), Postives = 70/184 (38.04%), Query Frame = 0


Query: 9   HVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDGGEHQR--- 68
           HVPKFG+W+  D P+T+ F+NAR  +   +      P+T P E+  P        Q+   
Sbjct: 6   HVPKFGDWNNQDQPFTVVFDNARTNKRQDLYESIEKPETKPQELAPPPPQPARRIQKPEA 65

Query: 69  -------RPRQQPNRERGAV-------INSGSEKLSSERSGSDYA-LLKKSKENGVEGIS 128
                   PR  P  E+  V       +  G       RSGS  A  L      G  G  
Sbjct: 66  PKPVKQDTPRAPPPTEKNRVKAPPADQLYGGGGSGGGGRSGSGSAGGLYGGYGGGSVGNQ 125

Query: 129 RLAPAV-----------AGHGGNPASVPKF-GSWDARDPKSGD-GYTAIFNKMKIEKQIA 162
           R  PA              +G    ++P F GS  A     GD  YT IF K+K E+   
Sbjct: 126 RQPPAPRPTQPRQNLRGGNNGRGGTTIPPFPGSVGA----GGDMSYTQIFEKVKEERNEG 185

[Close]

BLAST of Carg28283 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 45.1 bits (105), Expect = 7.7e-05
Identity = 17/30 (56.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 126 VPKFGSWDARDPKSGDGYTAIFNKMKIEKQ 156
           +PKFG WD  DP S +G+T IFNK + EK+
Sbjct: 8   LPKFGEWDVNDPSSAEGFTVIFNKARNEKK 37

[Close]

BLAST of Carg28283 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.0e-04
Identity = 17/30 (56.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 126 VPKFGSWDARDPKSGDGYTAIFNKMKIEKQ 156
           +PKFG WD  DP S +G+T IFNK + EK+
Sbjct: 8   LPKFGEWDVNDPASAEGFTVIFNKARDEKK 37

[Close]

BLAST of Carg28283 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.0e-04
Identity = 17/30 (56.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 126 VPKFGSWDARDPKSGDGYTAIFNKMKIEKQ 156
           +PKFG WD  DP S +G+T IFNK + EK+
Sbjct: 24  LPKFGEWDVNDPASAEGFTVIFNKARDEKK 53

The following BLAST results are available for this feature:

BLAST of Carg28283 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573489.1	5.5e-106	100.00	RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_022955116.1	2.0e-103	97.91	RPM1-interacting protein 4-like [Cucurbita moschata]	[more]
XP_023525812.1	5.7e-103	97.38	RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022994302.1	1.1e-98	93.33	RPM1-interacting protein 4-like [Cucurbita maxima]	[more]
XP_022142617.1	4.9e-62	64.68	RPM1-interacting protein 4-like [Momordica charantia]	[more]

BLAST of Carg28283 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYN5	2.2e-12	33.17	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]
Q8S3M3	7.5e-05	35.59	NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 SV=1	[more]

BLAST of Carg28283 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSU2	9.5e-104	97.91	RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111457178 PE...	[more]
A0A6J1JVE9	5.4e-99	93.33	RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111490070 PE=4...	[more]
A0A6J1CND0	2.4e-62	64.68	RPM1-interacting protein 4-like OS=Momordica charantia OX=3673 GN=LOC111012692 P...	[more]
A0A5A7UH42	1.9e-59	60.65	RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3C9P5	2.5e-59	60.19	RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103498234 PE=4 SV=...	[more]

BLAST of Carg28283 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25070.1	1.5e-13	33.17	RPM1 interacting protein 4	[more]
AT3G07195.1	1.2e-05	28.80	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G04410.1	7.7e-05	56.67	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.1	1.0e-04	56.67	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	1.0e-04	56.67	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 124..155 e-value: 7.7E-14 score: 50.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..137
None	No IPR available	PANTHER	PTHR33159:SF49	OS06G0636100 PROTEIN	coord: 66..181
None	No IPR available	PANTHER	PTHR33159:SF49	OS06G0636100 PROTEIN	coord: 7..80
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 7..80
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 66..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28283-RA	Carg28283-RA	mRNA