Carg28280 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28280
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Carg_Chr09: 9490047 .. 9491666 (+)
RNA-Seq Expression	Carg28280
Synteny	Carg28280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTTAGCTGCCTCCACCGCCGCCTCCCTCGGCGTTTCCGAAATGCTCGGAAACCCTCTAAGCTTCTCCGCTGCCTCTGCTAGATCTACTCCCTCTCCTAGTCCGGCCACCTTCAAGCCTGTCGCAATTTTCGGGAAGAAGCCCGCCCCCAAGTCGAAGCCCTCCACCGTCTCTCCGATCAATGACGAGCTCGCCAAGTGGTACGGTGAGTCCCAACCGTCGTATTCAGATCTCTCTAATTGAAAACCCTTCACTCAATTATGTTTTGTATTTCCTAAAATAATGAATTCCATTTTTTATTCTAATTAGGTCCCGACCTGAAGGATTTTTTTGCCGGACGGGCTGTTGGATCGATCCGAGATCCCGGAGTACTTGAACGGAGAAGTCCCCGGCGAGTATGATTTAATTTTCGATATTGTCCACTTTAAATTTTCATGGATTTGCTTTGGGCTTACCCAAAACATTTCGTACTAATAGGGATATATTCTTTACTTGTAAACTCAGAATCATTCTTTAAATGAGTGAATGTGGGACTCCTCCTACTAATTCTCCCTTCAAACAAAGTACACTATAGAAGCCTCCTCTGATGCCTATGGAGCCCTCGAACAGTCTCCCTTTAATCGAAGCTCGACTCCTTCTCTGGAGTCCTCGAACAAAGTACAACATTTTTTTCAACAATTGAGTCACTTTTGACTATACCTTCGAGGCTCACAACTTCTTTGTTCAACATTTGAGGGCCTATGGAGCTCTGAACAGCCTCCCCATAATCGAGGCTCGACCCTTATCTGGAGTTTTCGAACAAAGTACACCCTTTGTTCGATTGACTACACTTTCAAGGGTCCCAATTGACACTTGAGTCTCTTTTGACAACACTTTCGAGTGTCCCAATTTCTTTGTGCAACATTTGAGCATTCTAGTGACATGACTAAATTAAGGGCATGACTATGATACCATGTTAGAAATCGTGACTCTCCACAATAGTATGATATTGTCCACTTTAAGCTCTCGTGACTTCGATTTTGGCTTCCCAAAAAACCTCAAAACAACGAAAATGTATTCCTTACTTGTAAACTCATGATCTTTTATTTTGTTAATTACAGCTACGGTTACGACCCGTTTGGACTCAGCAAGAATCGAGAAAACTTCACCAAGTAAATAAATCTCTATTAATCTAAGAACCCAACACTAATTTCTTCAATTATATGAAGCTTACATAAAGATTGGCTTGTTTTTTTTGTTCTATTTCTTGGGTAGATATCAAGCCTTTGAGTTGATACATGCACGATGGGCGATGCTTGGGGCTGCTGGTTTCATCATTCCTGAGGCCTTCAACAAATTTGGCGCCAACTGTGGCCCGGAGGCTGTCTGGTTCAAGGTCGGTTTGATTGTGTTTATATATACTTAGTTTTCAAAGCAACAAATTAAGAACAATGTGAATTATTGGGATATGCGGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTTGGAAATAGCATTCCGATCAACCTCGTCGCCGCCGTTGTTGCGGAGGTTGTTCTTGTTGGTGGCGCTGAGTATTATCGGATCATCAATGGCTTGGTACGAATTTTTTTTGGATAAAGTTC

mRNA sequence

ATGGCTTCTTTAGCTGCCTCCACCGCCGCCTCCCTCGGCGTTTCCGAAATGCTCGGAAACCCTCTAAGCTTCTCCGCTGCCTCTGCTAGATCTACTCCCTCTCCTAGTCCGGCCACCTTCAAGCCTGTCGCAATTTTCGGGAAGAAGCCCGCCCCCAAGTCGAAGCCCTCCACCGTCTCTCCGATCAATGACGAGCTCGCCAAGTGGTACGGTGAGTCCCAACCGTCATATCAAGCCTTTGAGTTGATACATGCACGATGGGCGATGCTTGGGGCTGCTGGTTTCATCATTCCTGAGGCCTTCAACAAATTTGGCGCCAACTGTGGCCCGGAGGCTGTCTGGTTCAAGGTCGGTTTGATTGTGTTTATATATACTTAGTTTTCAAAGCAACAAATTAAGAACAATGTGAATTATTGGGATATGCGGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTTGGAAATAGCATTCCGATCAACCTCGTCGCCGCCGTTGTTGCGGAGGTTGTTCTTGTTGGTGGCGCTGAGTATTATCGGATCATCAATGGCTTGGTACGAATTTTTTTTGGATAAAGTTC

Coding sequence (CDS)

ATGGCTTCTTTAGCTGCCTCCACCGCCGCCTCCCTCGGCGTTTCCGAAATGCTCGGAAACCCTCTAAGCTTCTCCGCTGCCTCTGCTAGATCTACTCCCTCTCCTAGTCCGGCCACCTTCAAGCCTGTCGCAATTTTCGGGAAGAAGCCCGCCCCCAAGTCGAAGCCCTCCACCGTCTCTCCGATCAATGACGAGCTCGCCAAGTGGTACGGTGAGTCCCAACCGTCATATCAAGCCTTTGAGTTGATACATGCACGATGGGCGATGCTTGGGGCTGCTGGTTTCATCATTCCTGAGGCCTTCAACAAATTTGGCGCCAACTGTGGCCCGGAGGCTGTCTGGTTCAAGGTCGGTTTGATTGTGTTTATATATACTTAG

Protein sequence

MASLAASTAASLGVSEMLGNPLSFSAASARSTPSPSPATFKPVAIFGKKPAPKSKPSTVSPINDELAKWYGESQPSYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVGLIVFIYT

Homology

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BLAST of Carg28280 vs. NCBI nr
Match: KAG7025115.1 (Chlorophyll a-b binding protein CP26, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.4 bits (625), Expect = 2.7e-61
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MASLAASTAASLGVSEMLGNPLSFSAASARSTPSPSPATFKPVAIFGKKPAPKSKPSTVS 60
           MASLAASTAASLGVSEMLGNPLSFSAASARSTPSPSPATFKPVAIFGKKPAPKSKPSTVS
Sbjct: 1   MASLAASTAASLGVSEMLGNPLSFSAASARSTPSPSPATFKPVAIFGKKPAPKSKPSTVS 60

Query: 61  PINDELAKWYGESQPSYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVGLI 120
           PINDELAKWYGESQPSYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVGLI
Sbjct: 61  PINDELAKWYGESQPSYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVGLI 120

Query: 121 VFIYT 126
           VFIYT
Sbjct: 121 VFIYT 125

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BLAST of Carg28280 vs. NCBI nr
Match: XP_023521205.1 (chlorophyll a-b binding protein CP26, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47
Identity = 111/146 (76.03%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 1   MASLAAST--AASLGVSEMLGNPLSFSAASARSTPSPSPATFKPVAIFGKKPAPKSKPST 60
           MASLAAST  AASLGVSEMLGNPLSFSAASA S PSPSPATFKPVAIFGKKPAPKSKPST
Sbjct: 1   MASLAASTAAAASLGVSEMLGNPLSFSAASASSAPSPSPATFKPVAIFGKKPAPKSKPST 60

Query: 61  VSPINDELAKWY-----------------------GESQPSYQAFELIHARWAMLGAAGF 120
           VSPINDELAKWY                       GE    YQAFELIHARWAMLGAAGF
Sbjct: 61  VSPINDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGEYQAFELIHARWAMLGAAGF 120

Query: 121 IIPEAFNKFGANCGPEAVWFKVGLIV 122
           IIPEAFNKFGANCGPEAVWFK G ++
Sbjct: 121 IIPEAFNKFGANCGPEAVWFKTGALL 146

[Close]

BLAST of Carg28280 vs. NCBI nr
Match: XP_023521204.1 (chlorophyll a-b binding protein CP26, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.1 bits (492), Expect = 7.1e-46
Identity = 111/163 (68.10%), Postives = 114/163 (69.94%), Query Frame = 0


Query: 1   MASLAAST--AASLGVSEMLGNPLSFSAASARSTPSPSPATFKPVAIFGKKPAPKSKPST 60
           MASLAAST  AASLGVSEMLGNPLSFSAASA S PSPSPATFKPVAIFGKKPAPKSKPST
Sbjct: 1   MASLAASTAAAASLGVSEMLGNPLSFSAASASSAPSPSPATFKPVAIFGKKPAPKSKPST 60

Query: 61  VSPINDELAKWYG----------------------------------------ESQPSYQ 120
           VSPINDELAKWYG                                        E+   YQ
Sbjct: 61  VSPINDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKNRENFTKYQ 120

Query: 121 AFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVGLIV 122
           AFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK G ++
Sbjct: 121 AFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 163

[Close]

BLAST of Carg28280 vs. NCBI nr
Match: XP_022932823.1 (chlorophyll a-b binding protein CP26, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 183.7 bits (465), Expect = 9.6e-43
Identity = 106/162 (65.43%), Postives = 110/162 (67.90%), Query Frame = 0


Query: 1   MASLAAST-AASLGVSEMLGNPLSFSAASARSTPSPSPATFKPVAIFGKKPAPKSKPSTV 60
           MASLAAS+ AASLGVSEML NPLSFS ASARS PSPSP TFKPVAIF KKPAPKSKPS V
Sbjct: 1   MASLAASSAAASLGVSEMLVNPLSFSTASARSAPSPSPTTFKPVAIFRKKPAPKSKPSAV 60

Query: 61  SPINDELAKWYG----------------------------------------ESQPSYQA 120
           SPINDELAKWYG                                        E+   YQA
Sbjct: 61  SPINDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPLGLSKNPENFTKYQA 120

Query: 121 FELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVGLIV 122
           FELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK G ++
Sbjct: 121 FELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 162

[Close]

BLAST of Carg28280 vs. NCBI nr
Match: XP_038889943.1 (chlorophyll a-b binding protein CP26, chloroplastic [Benincasa hispida])

HSP 1 Score: 167.9 bits (424), Expect = 5.4e-38
Identity = 103/165 (62.42%), Postives = 107/165 (64.85%), Query Frame = 0


Query: 1   MASLAAST-AASLGVSEMLGNPLSFSAASARSTPS-PSPATFKPVAIFGKKPA--PKSKP 60
           MASLAAST AASLGVSEML NPLSFS ASARS PS  SPATFK VA+FGKKPA   K KP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPATFKTVALFGKKPAAPSKPKP 60

Query: 61  STVSPINDELAKWYG----------------------------------------ESQPS 120
           S VSP+NDELAKWYG                                        E    
Sbjct: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVGLIV 122
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK G ++
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 165

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BLAST of Carg28280 vs. ExPASy Swiss-Prot
Match: Q9XF89 (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB5 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-30
Identity = 78/153 (50.98%), Postives = 88/153 (57.52%), Query Frame = 0


Query: 10  ASLGVSEMLGNPLSFSAASARSTP-SPSPATFKPVAIFGKKPAPKSKPSTVSPINDELAK 69
           ASLGVSEMLG PL+F A S  S P + SP+TFK VA+F KK    +K   VS  +DELAK
Sbjct: 2   ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSETSDELAK 61

Query: 70  WYG----------------------------------------ESQPSYQAFELIHARWA 122
           WYG                                        E+   YQAFELIHARWA
Sbjct: 62  WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121

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BLAST of Carg28280 vs. ExPASy Swiss-Prot
Match: P20866 (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrium patens OX=3218 GN=PHYPADRAFT_124625 PE=3 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-06
Identity = 33/75 (44.00%), Postives = 39/75 (52.00%), Query Frame = 0


Query: 58  TVSPINDELAKWYG----------ESQPSYQAFELIHARWAMLGAAGFIIPEAFNKFGAN 117
           T S +N E A  YG          E+    +  E+IHARWAMLGA G + PE   K G  
Sbjct: 67  TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVK 126

Query: 118 CGPEAVWFKVGLIVF 123
            G EAVWFK G  +F
Sbjct: 127 FG-EAVWFKAGAQIF 140

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BLAST of Carg28280 vs. ExPASy Swiss-Prot
Match: P12328 (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba OX=4470 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.4e-06
Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 81  ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVGLIVF 123
           E+IH+RWAMLGA G I PE  +K G   G EAVWFK G  +F
Sbjct: 97  EVIHSRWAMLGALGCIFPELLSKNGVQFG-EAVWFKAGAQIF 137

[Close]

BLAST of Carg28280 vs. ExPASy Swiss-Prot
Match: P12330 (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CAB1R PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 4.4e-06
Identity = 44/135 (32.59%), Postives = 55/135 (40.74%), Query Frame = 0


Query: 25  SAASARSTPSPSPATFKPVAIFGKKPAPKSKPSTVSPINDELAKWYGESQ---------- 84
           S   AR+ PS S A F    I  +K A K KP+  S      + WYG  +          
Sbjct: 10  SPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSG-----SPWYGADRVLYLGPLSGE 69

Query: 85  -PSY--------------------------QAFELIHARWAMLGAAGFIIPEAFNKFGAN 123
            PSY                          +  E+IH+RWAMLGA G + PE   + G  
Sbjct: 70  PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 129

[Close]

BLAST of Carg28280 vs. ExPASy Swiss-Prot
Match: A2XJ35 (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.7e-06
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 81  ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVGLIVF 123
           E+IH+RWAMLGA G + PE  +K G   G EAVWFK G  +F
Sbjct: 96  EVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIF 136

[Close]

BLAST of Carg28280 vs. ExPASy TrEMBL
Match: A0A6J1F2U3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111439282 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.6e-43
Identity = 106/162 (65.43%), Postives = 110/162 (67.90%), Query Frame = 0


Query: 1   MASLAAST-AASLGVSEMLGNPLSFSAASARSTPSPSPATFKPVAIFGKKPAPKSKPSTV 60
           MASLAAS+ AASLGVSEML NPLSFS ASARS PSPSP TFKPVAIF KKPAPKSKPS V
Sbjct: 1   MASLAASSAAASLGVSEMLVNPLSFSTASARSAPSPSPTTFKPVAIFRKKPAPKSKPSAV 60

Query: 61  SPINDELAKWYG----------------------------------------ESQPSYQA 120
           SPINDELAKWYG                                        E+   YQA
Sbjct: 61  SPINDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPLGLSKNPENFTKYQA 120

Query: 121 FELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVGLIV 122
           FELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK G ++
Sbjct: 121 FELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 162

[Close]

BLAST of Carg28280 vs. ExPASy TrEMBL
Match: A0A6M3WIJ8 (Chlorophyll a-b binding protein, chloroplastic OS=Carica papaya OX=3649 GN=Lhcb5 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.7e-37
Identity = 100/166 (60.24%), Postives = 106/166 (63.86%), Query Frame = 0


Query: 1   MASLAAST-AASLGVSEMLGNPLSFSAASARSTPSPS-PATFKPVAIFGKK---PAPKSK 60
           MASLAAST AASLGVSEMLGNPL+FS AS  S PSPS PATFK VA+F KK   P PKSK
Sbjct: 1   MASLAASTAAASLGVSEMLGNPLNFSGASRSSAPSPSTPATFKTVALFSKKKAAPPPKSK 60

Query: 61  PSTVSPINDELAKWYG----------------------------------------ESQP 120
           P+ VSP NDELAKWYG                                        E   
Sbjct: 61  PAAVSPANDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFS 120

Query: 121 SYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVGLIV 122
            YQA+ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK G ++
Sbjct: 121 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 166

[Close]

BLAST of Carg28280 vs. ExPASy TrEMBL
Match: A0A2I0KCY7 (Chlorophyll a-b binding protein, chloroplastic OS=Punica granatum OX=22663 GN=LOC116204457 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 6.5e-37
Identity = 98/165 (59.39%), Postives = 109/165 (66.06%), Query Frame = 0


Query: 1   MASLAAST-AASLGVSEMLGNPLSFSAASARSTP-SPSPATFKPVAIFGKKPA--PKSKP 60
           MAS+AAST AASLGVSEMLGNPL+FS ++ARS P + SPATFK VA+F KK A  PKSKP
Sbjct: 1   MASVAASTAAASLGVSEMLGNPLNFSGSAARSAPMASSPATFKTVALFSKKKAAPPKSKP 60

Query: 61  STVSPINDELAKWYG----------------------------------------ESQPS 120
           +TVSP NDELAKWYG                                        E+   
Sbjct: 61  ATVSPANDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPENFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVGLIV 122
           YQA+ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK G ++
Sbjct: 121 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 165

[Close]

BLAST of Carg28280 vs. ExPASy TrEMBL
Match: A0A6J1ID20 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471983 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.2e-36
Identity = 101/165 (61.21%), Postives = 104/165 (63.03%), Query Frame = 0


Query: 1   MASLAAST-AASLGVSEMLGNPLSFSAASARSTPS-PSPATFKPVAIFGKKP--APKSKP 60
           MASLAAST AASLGVSEML NPLS S ASARS  S  SP T K VAIFGKKP  APK KP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60

Query: 61  STVSPINDELAKWYG----------------------------------------ESQPS 120
           S VSP+NDELAKWYG                                        E    
Sbjct: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVGLIV 122
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK G ++
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 165

[Close]

BLAST of Carg28280 vs. ExPASy TrEMBL
Match: A0A6J1EWI5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111438899 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.2e-36
Identity = 101/165 (61.21%), Postives = 104/165 (63.03%), Query Frame = 0


Query: 1   MASLAAST-AASLGVSEMLGNPLSFSAASARSTPS-PSPATFKPVAIFGKK--PAPKSKP 60
           MASLAAST AASLGVSEML NPLSFS ASARS  S  SP T K VA+FGKK  PAPK KP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60

Query: 61  STVSPINDELAKWYG----------------------------------------ESQPS 120
           S VSP NDELAKWYG                                        E    
Sbjct: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVGLIV 122
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK G ++
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 165

[Close]

BLAST of Carg28280 vs. TAIR 10
Match: AT4G10340.1 (light harvesting complex of photosystem II 5 )

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-31
Identity = 78/153 (50.98%), Postives = 88/153 (57.52%), Query Frame = 0


Query: 10  ASLGVSEMLGNPLSFSAASARSTP-SPSPATFKPVAIFGKKPAPKSKPSTVSPINDELAK 69
           ASLGVSEMLG PL+F A S  S P + SP+TFK VA+F KK    +K   VS  +DELAK
Sbjct: 2   ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSETSDELAK 61

Query: 70  WYG----------------------------------------ESQPSYQAFELIHARWA 122
           WYG                                        E+   YQAFELIHARWA
Sbjct: 62  WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121

[Close]

BLAST of Carg28280 vs. TAIR 10
Match: AT2G05100.1 (photosystem II light harvesting complex gene 2.1 )

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 81  ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVGLIVF 123
           E+IH+RWAMLGA G   PE  +K G   G EAVWFK G  +F
Sbjct: 98  EVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIF 138

[Close]

BLAST of Carg28280 vs. TAIR 10
Match: AT2G05070.1 (photosystem II light harvesting complex gene 2.2 )

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 81  ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVGLIVF 123
           E+IH+RWAMLGA G   PE  +K G   G EAVWFK G  +F
Sbjct: 98  EVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIF 138

[Close]

BLAST of Carg28280 vs. TAIR 10
Match: AT3G27690.1 (photosystem II light harvesting complex gene 2.3 )

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 81  ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVGLIVF 123
           E+IH+RWAMLGA G   PE  +K G   G EAVWFK G  +F
Sbjct: 99  EVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIF 139

[Close]

BLAST of Carg28280 vs. TAIR 10
Match: AT1G76570.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-06
Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 77  YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVG 119
           Y  FE++HARWAML A G +IPE F+  G     E VW++VG
Sbjct: 151 YFNFEILHARWAMLAALGALIPEVFDLTGTFHFAEPVWWRVG 192

The following BLAST results are available for this feature:

BLAST of Carg28280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025115.1	2.7e-61	100.00	Chlorophyll a-b binding protein CP26, chloroplastic, partial [Cucurbita argyrosp...	[more]
XP_023521205.1	1.3e-47	76.03	chlorophyll a-b binding protein CP26, chloroplastic-like isoform X2 [Cucurbita p...	[more]
XP_023521204.1	7.1e-46	68.10	chlorophyll a-b binding protein CP26, chloroplastic-like isoform X1 [Cucurbita p...	[more]
XP_022932823.1	9.6e-43	65.43	chlorophyll a-b binding protein CP26, chloroplastic-like [Cucurbita moschata]	[more]
XP_038889943.1	5.4e-38	62.42	chlorophyll a-b binding protein CP26, chloroplastic [Benincasa hispida]	[more]

BLAST of Carg28280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XF89	1.9e-30	50.98	Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
P20866	1.5e-06	44.00	Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrium patens OX=3218 G...	[more]
P12328	4.4e-06	59.52	Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba OX...	[more]
P12330	4.4e-06	32.59	Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica...	[more]
A2XJ35	5.7e-06	57.14	Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica OX=...	[more]

BLAST of Carg28280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F2U3	4.6e-43	65.43	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6M3WIJ8	1.7e-37	60.24	Chlorophyll a-b binding protein, chloroplastic OS=Carica papaya OX=3649 GN=Lhcb5...	[more]
A0A2I0KCY7	6.5e-37	59.39	Chlorophyll a-b binding protein, chloroplastic OS=Punica granatum OX=22663 GN=LO...	[more]
A0A6J1ID20	3.2e-36	61.21	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1EWI5	3.2e-36	61.21	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of Carg28280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10340.1	1.4e-31	50.98	light harvesting complex of photosystem II 5	[more]
AT2G05100.1	1.5e-06	57.14	photosystem II light harvesting complex gene 2.1	[more]
AT2G05070.1	1.5e-06	57.14	photosystem II light harvesting complex gene 2.2	[more]
AT3G27690.1	1.5e-06	57.14	photosystem II light harvesting complex gene 2.3	[more]
AT1G76570.1	2.0e-06	52.38	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 13..123 e-value: 8.9E-16 score: 60.2
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 50..118 e-value: 8.7E-11 score: 42.6
None	No IPR available	PANTHER	PTHR21649:SF104	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 76..121 coord: 1..72
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 72..122
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 76..121 coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28280-RA	Carg28280-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0034357	photosynthetic membrane
cellular_component	GO:0016020	membrane