Carg28194 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg28194
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 5251376 .. 5252095 (-)
RNA-Seq ExpressionCarg28194
SyntenyCarg28194
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACAGAGGAAGTTGAAGCAATGGGACTCTCCGATCATCTCCGTACCTTACTGAAGTTTTTCCGGCTTACAGAGGTTTTTGCTGCGATGGCATTTCTCGTTTGGACGTTTAGTCGCCTCCCTTTGATTCTCAGAGTTTCGAGCGATTACATTTCTCAAATCTCCGGTTATTTTACAAGTCCGATTTTCGGCTTCATGCTCTGTAACACCATTATCATCGCTCTAATTTCCAAGCCCCACCGCTTCTCCGGCGGAAAAAATTCACCGTGACAATGTTGAAACGGAGCTCGTAAACGAACTGGTAAAAGACGGGGCTCTTACGTCTCTGTCTTTGCCTGGGAGTGAAGCCGAATGGGCGGCTCTGCTCTGACCTAGAGCTTGAGGAGATTGCGTACGAGGACAAAGAGGTAATTTCAGAGGTGAGCTCAACAACGGCAGCGGCCTTCACTGAAGAAATAGAGGATTTCAGTTCGGGATCGGAGAAATTGAAGCTAGCATGGAGCGAATTCGGTGGAGGAGAGTTCGGGCGAGCAGAGGTAGAGGAGGAGGCGATTTGGGGGAGGAGGGGTTTTGCCGGAAAGTGTACGGCAGGGGGAGGAGCTGAGCAATAAGGAGTTTGAGCGAAGGATCGACGCGTTCATTGCACGAGAGTTGAGGTTTCGCTGGGAAGAATCCGGCGCCGTCGTCCTCCCAACTGGAAGTTGCCTCCGAGGTTAA

mRNA sequence

ATGAAAACAGAGGAAGTTGAAGCAATGGGACTCTCCGATCATCTCCGTACCTTACTGAAGTTTTTCCGGCTTACAGAGGTTTTTGCTGCGATGGCATTTCTCGTTTGGACGTTTAGTCGCCTCCCTTTGATTCTCAGAGTTTCGAGCGATTACATTTCTCAAATCTCCGTGAAGCCGAATGGGCGGCTCTGCTCTGACCTAGAGCTTGAGGAGATTGCGTACGAGGACAAAGAGGTAATTTCAGAGGTGAGCTCAACAACGGCAGCGGCCTTCACTGAAGAAATAGAGGATTTCAGTTCGGGATCGGAGAAATTGAAGCTAGCATGGAGCGAATTCGGTGGAGGAGAGTTCGGGCGAGCAGAGGGGGAGGAGCTGAGCAATAAGGAGTTTGAGCGAAGGATCGACGCGTTCATTGCACGAGAGTTGAGGTTTCGCTGGGAAGAATCCGGCGCCGTCGTCCTCCCAACTGGAAGTTGCCTCCGAGGTTAA

Coding sequence (CDS)

ATGAAAACAGAGGAAGTTGAAGCAATGGGACTCTCCGATCATCTCCGTACCTTACTGAAGTTTTTCCGGCTTACAGAGGTTTTTGCTGCGATGGCATTTCTCGTTTGGACGTTTAGTCGCCTCCCTTTGATTCTCAGAGTTTCGAGCGATTACATTTCTCAAATCTCCGTGAAGCCGAATGGGCGGCTCTGCTCTGACCTAGAGCTTGAGGAGATTGCGTACGAGGACAAAGAGGTAATTTCAGAGGTGAGCTCAACAACGGCAGCGGCCTTCACTGAAGAAATAGAGGATTTCAGTTCGGGATCGGAGAAATTGAAGCTAGCATGGAGCGAATTCGGTGGAGGAGAGTTCGGGCGAGCAGAGGGGGAGGAGCTGAGCAATAAGGAGTTTGAGCGAAGGATCGACGCGTTCATTGCACGAGAGTTGAGGTTTCGCTGGGAAGAATCCGGCGCCGTCGTCCTCCCAACTGGAAGTTGCCTCCGAGGTTAA

Protein sequence

MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQISVKPNGRLCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAEGEELSNKEFERRIDAFIARELRFRWEESGAVVLPTGSCLRG
Homology
BLAST of Carg28194 vs. NCBI nr
Match: KAG7033985.1 (hypothetical protein SDJN02_03711, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 312.4 bits (799), Expect = 2.3e-81
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0

Query: 1   MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQISVKPN 60
           MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQISVKPN
Sbjct: 1   MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQISVKPN 60

Query: 61  GRLCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRA 120
           GRLCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRA
Sbjct: 61  GRLCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRA 120

Query: 121 EGEELSNKEFERRIDAFIARELRFRWEESGAVVLPTGSCLRG 163
           EGEELSNKEFERRIDAFIARELRFRWEESGAVVLPTGSCLRG
Sbjct: 121 EGEELSNKEFERRIDAFIARELRFRWEESGAVVLPTGSCLRG 162

BLAST of Carg28194 vs. NCBI nr
Match: KAG6603959.1 (hypothetical protein SDJN03_04568, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 270.8 bits (691), Expect = 7.7e-69
Identity = 160/238 (67.23%), Postives = 161/238 (67.65%), Query Frame = 0

Query: 1   MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
           MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS    
Sbjct: 1   MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQISGYFT 60

Query: 61  ------------------------------------------------------VKPNGR 120
                                                                  +PNGR
Sbjct: 61  SPIFGFMLCNTIIIALISKPHRFSGGKFTGDNVETELVNELVKDGALTSLSLPGSEPNGR 120

Query: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE- 163
           LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE 
Sbjct: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAEV 180

BLAST of Carg28194 vs. NCBI nr
Match: XP_022950349.1 (uncharacterized protein LOC111453461 [Cucurbita moschata])

HSP 1 Score: 264.6 bits (675), Expect = 5.5e-67
Identity = 159/238 (66.81%), Postives = 159/238 (66.81%), Query Frame = 0

Query: 1   MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
           MKTEEVEAMGLSDHLRTLLKF R TEVFAAMAFLVWTFSRLPLILRVSSDYISQIS    
Sbjct: 1   MKTEEVEAMGLSDHLRTLLKFLRFTEVFAAMAFLVWTFSRLPLILRVSSDYISQISGYFT 60

Query: 61  -----------------------------------------VK-------------PNGR 120
                                                    VK             PNGR
Sbjct: 61  SPVFGFMLCNTIIIALIAKPPRFSGGKFTGDNVETELVNELVKDGALTSLSLPGSGPNGR 120

Query: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE- 163
           LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDF SGSEKLKLAWSEFGGGEFGRAE 
Sbjct: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFCSGSEKLKLAWSEFGGGEFGRAEV 180

BLAST of Carg28194 vs. NCBI nr
Match: XP_022977278.1 (uncharacterized protein LOC111477644 [Cucurbita maxima])

HSP 1 Score: 262.7 bits (670), Expect = 2.1e-66
Identity = 156/238 (65.55%), Postives = 158/238 (66.39%), Query Frame = 0

Query: 1   MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
           MKTEEVEAMGLSDHLRTLLKFFR TEVFAAMA LVWTFSRLPLILRVSSDYISQIS    
Sbjct: 1   MKTEEVEAMGLSDHLRTLLKFFRFTEVFAAMALLVWTFSRLPLILRVSSDYISQISGYFT 60

Query: 61  ------------------------------------------------------VKPNGR 120
                                                                  +PNGR
Sbjct: 61  SPVFGFMLCNTIIIALIAKPHRFSGEKFTGDNVETELVNELVKDGALTSLSLPGSEPNGR 120

Query: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE- 163
           LCSD+ELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEF RAE 
Sbjct: 121 LCSDVELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFERAEV 180

BLAST of Carg28194 vs. NCBI nr
Match: XP_023543998.1 (uncharacterized protein LOC111803706 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.5 bits (654), Expect = 1.5e-64
Identity = 153/238 (64.29%), Postives = 156/238 (65.55%), Query Frame = 0

Query: 1   MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
           MKTEEVEAMGLSDHLRTLLKF R TEV AAMAFLVWTFSRLPLILRVSSDYISQIS    
Sbjct: 1   MKTEEVEAMGLSDHLRTLLKFLRFTEVSAAMAFLVWTFSRLPLILRVSSDYISQISGYFT 60

Query: 61  ------------------------------------------------------VKPNGR 120
                                                                  +PNGR
Sbjct: 61  SPVFGFMLCNTIIIALIAKPHRFSGGKFTGDNVETELVNELVKDGALTSLSLPGSEPNGR 120

Query: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE- 163
           LCSDLELEEIAYEDKEVISEV STTAAAFTEEIEDFSSGSEKLKLAWSEFGGG FGRAE 
Sbjct: 121 LCSDLELEEIAYEDKEVISEVRSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGVFGRAEV 180

BLAST of Carg28194 vs. ExPASy TrEMBL
Match: A0A6J1GFJ2 (uncharacterized protein LOC111453461 OS=Cucurbita moschata OX=3662 GN=LOC111453461 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.7e-67
Identity = 159/238 (66.81%), Postives = 159/238 (66.81%), Query Frame = 0

Query: 1   MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
           MKTEEVEAMGLSDHLRTLLKF R TEVFAAMAFLVWTFSRLPLILRVSSDYISQIS    
Sbjct: 1   MKTEEVEAMGLSDHLRTLLKFLRFTEVFAAMAFLVWTFSRLPLILRVSSDYISQISGYFT 60

Query: 61  -----------------------------------------VK-------------PNGR 120
                                                    VK             PNGR
Sbjct: 61  SPVFGFMLCNTIIIALIAKPPRFSGGKFTGDNVETELVNELVKDGALTSLSLPGSGPNGR 120

Query: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE- 163
           LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDF SGSEKLKLAWSEFGGGEFGRAE 
Sbjct: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFCSGSEKLKLAWSEFGGGEFGRAEV 180

BLAST of Carg28194 vs. ExPASy TrEMBL
Match: A0A6J1IPH9 (uncharacterized protein LOC111477644 OS=Cucurbita maxima OX=3661 GN=LOC111477644 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.0e-66
Identity = 156/238 (65.55%), Postives = 158/238 (66.39%), Query Frame = 0

Query: 1   MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
           MKTEEVEAMGLSDHLRTLLKFFR TEVFAAMA LVWTFSRLPLILRVSSDYISQIS    
Sbjct: 1   MKTEEVEAMGLSDHLRTLLKFFRFTEVFAAMALLVWTFSRLPLILRVSSDYISQISGYFT 60

Query: 61  ------------------------------------------------------VKPNGR 120
                                                                  +PNGR
Sbjct: 61  SPVFGFMLCNTIIIALIAKPHRFSGEKFTGDNVETELVNELVKDGALTSLSLPGSEPNGR 120

Query: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE- 163
           LCSD+ELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEF RAE 
Sbjct: 121 LCSDVELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFERAEV 180

BLAST of Carg28194 vs. ExPASy TrEMBL
Match: A0A0A0KM84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502870 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.5e-43
Identity = 115/231 (49.78%), Postives = 130/231 (56.28%), Query Frame = 0

Query: 1   MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
           MKT EV+AMG+   L+ ++K FR TEV  AM FL+WTFSRLPL+LRVSSD+ISQIS    
Sbjct: 1   MKTVEVKAMGVYKLLQIMVKIFRFTEVLVAMGFLIWTFSRLPLVLRVSSDFISQISNYFT 60

Query: 61  -------------------------------------------------------VKPNG 120
                                                                   +PNG
Sbjct: 61  SPVFGFILCNIIIVSLIAKPHNFSCGKINSDKNVETVLFNELVEDGAVTSLSLAGSEPNG 120

Query: 121 RLCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE 155
           RLCSD E EEIAYEDKEVISEV+ST  A F+E++EDF   SEKLKL W E+GGGE  R +
Sbjct: 121 RLCSDTEQEEIAYEDKEVISEVTSTQTAVFSEKMEDFGLESEKLKLLWREYGGGELRRVK 180

BLAST of Carg28194 vs. ExPASy TrEMBL
Match: A0A5A7SYQ4 (Putative TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001910 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.1e-42
Identity = 112/231 (48.48%), Postives = 132/231 (57.14%), Query Frame = 0

Query: 1   MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
           MKTE V+AMG+ + L++++K FR TEV  AM FL+WTFSRLPL+L+VSSD+ISQIS    
Sbjct: 1   MKTEGVKAMGVYNLLQSMVKIFRFTEVLGAMGFLIWTFSRLPLVLKVSSDFISQISNYFT 60

Query: 61  -------------------------------------------------------VKPNG 120
                                                                   +PNG
Sbjct: 61  SPVFGFILCNIIIVSLIAKPHNFSGGKINGDNDVETELFNELVEDGAVTSLSLAGSEPNG 120

Query: 121 RLCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE 155
           RLCSD E E+IAYEDKEVISEV+ST AA FTE++E+F   SEKLKL W+EFGGGE  R +
Sbjct: 121 RLCSDTEQEKIAYEDKEVISEVTSTRAAVFTEKMENFGLESEKLKLVWTEFGGGELRRLK 180

BLAST of Carg28194 vs. ExPASy TrEMBL
Match: A0A1S3B3G2 (uncharacterized protein LOC103485351 OS=Cucumis melo OX=3656 GN=LOC103485351 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.1e-42
Identity = 112/231 (48.48%), Postives = 132/231 (57.14%), Query Frame = 0

Query: 1   MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS---- 60
           MKTE V+AMG+ + L++++K FR TEV  AM FL+WTFSRLPL+L+VSSD+ISQIS    
Sbjct: 1   MKTEGVKAMGVYNLLQSMVKIFRFTEVLGAMGFLIWTFSRLPLVLKVSSDFISQISNYFT 60

Query: 61  -------------------------------------------------------VKPNG 120
                                                                   +PNG
Sbjct: 61  SPVFGFILCNIIIVSLIAKPHNFSGGKINGDNDVETELFNELVEDGAVTSLSLAGSEPNG 120

Query: 121 RLCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAE 155
           RLCSD E E+IAYEDKEVISEV+ST AA FTE++E+F   SEKLKL W+EFGGGE  R +
Sbjct: 121 RLCSDTEQEKIAYEDKEVISEVTSTRAAVFTEKMENFGLESEKLKLVWTEFGGGELRRLK 180

BLAST of Carg28194 vs. TAIR 10
Match: AT5G66440.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 4.2e-04
Identity = 18/56 (32.14%), Postives = 36/56 (64.29%), Query Frame = 0

Query: 1  MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQIS 57
          +K E+ +A+   +    + +FFR  EV  A+ F+ WTFS+LP ++++S  ++ +I+
Sbjct: 9  VKAEKAKALRRFNRFCRIGRFFRAAEVCVALLFIFWTFSQLPFVVQISGAFLRRIA 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7033985.12.3e-81100.00hypothetical protein SDJN02_03711, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6603959.17.7e-6967.23hypothetical protein SDJN03_04568, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022950349.15.5e-6766.81uncharacterized protein LOC111453461 [Cucurbita moschata][more]
XP_022977278.12.1e-6665.55uncharacterized protein LOC111477644 [Cucurbita maxima][more]
XP_023543998.11.5e-6464.29uncharacterized protein LOC111803706 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GFJ22.7e-6766.81uncharacterized protein LOC111453461 OS=Cucurbita moschata OX=3662 GN=LOC1114534... [more]
A0A6J1IPH91.0e-6665.55uncharacterized protein LOC111477644 OS=Cucurbita maxima OX=3661 GN=LOC111477644... [more]
A0A0A0KM843.5e-4349.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502870 PE=4 SV=1[more]
A0A5A7SYQ45.1e-4248.48Putative TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6 OS... [more]
A0A1S3B3G25.1e-4248.48uncharacterized protein LOC103485351 OS=Cucumis melo OX=3656 GN=LOC103485351 PE=... [more]
Match NameE-valueIdentityDescription
AT5G66440.14.2e-0432.14unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33640TRANSMEMBRANE PROTEINcoord: 2..56
coord: 67..155
NoneNo IPR availablePANTHERPTHR33640:SF3TRNA-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT TRM6MTASE SUBUNITcoord: 2..56
coord: 67..155

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg28194-RACarg28194-RAmRNA