Carg28179 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28179
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ring/U-Box superfamily protein, putative isoform 1
Location	Carg_Chr04: 11629878 .. 11630309 (-)
RNA-Seq Expression	Carg28179
Synteny	Carg28179

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGAGGGAAGATTCAAGACAACGTATGAGAAGAATTTTACAAGAAATTGCTGCAAAAATTTTATACCTTGAAGTTCCTCAAATTGATGCCGAGGATCATACTAGCATACCAGATGTCGAATCTTCCATTCAACAAATTGATACCCGTGAGGAATATGATGATATTGGAGTATTATCAGATCATTCTAAAAGTTTTTAAGACAATGATCTTGAAAATGTAGATCCGCTCGAATCTACTTCTCACGAGGAACTGAATGAAGATCTAGGTATGGGAGTTGAGCCAAATGATTGGCAAGCATATGGTTTTCAACGGGATGAATGGAAAAATAGCATTGAAGAAGATATAAACGAAGTTGGAAAGCATCACACTACTAATTGGTCTGGAGAATTCTCGAGTACGACACATAGAGGAGATGTTCATTTGTAA

mRNA sequence

ATGGAGATGAGGGAAGATTCAAGACAACGTATGAGAAGAATTTTACAAGAAATTGCTGCAAAAATTTTATACCTTGAAGTTCCTCAAATTGATGCCGAGGATCATACTAGCATACCAGATGTCGAATCTTCCATTCAACAAATTGATACCCGTGAGGAATATGATGATATTGGAGTATTATCAGATCATTCTAAAAACAATGATCTTGAAAATGTAGATCCGCTCGAATCTACTTCTCACGAGGAACTGAATGAAGATCTAGGTATGGGAGTTGAGCCAAATGATTGGCAAGCATATGGTTTTCAACGGGATGAATGGAAAAATAGCATTGAAGAAGATATAAACGAAGTTGGAAAGCATCACACTACTAATTGGTCTGGAGAATTCTCGAGTACGACACATAGAGGAGATGTTCATTTGTAA

Coding sequence (CDS)

ATGGAGATGAGGGAAGATTCAAGACAACGTATGAGAAGAATTTTACAAGAAATTGCTGCAAAAATTTTATACCTTGAAGTTCCTCAAATTGATGCCGAGGATCATACTAGCATACCAGATGTCGAATCTTCCATTCAACAAATTGATACCCGTGAGGAATATGATGATATTGGAGTATTATCAGATCATTCTAAAAACAATGATCTTGAAAATGTAGATCCGCTCGAATCTACTTCTCACGAGGAACTGAATGAAGATCTAGGTATGGGAGTTGAGCCAAATGATTGGCAAGCATATGGTTTTCAACGGGATGAATGGAAAAATAGCATTGAAGAAGATATAAACGAAGTTGGAAAGCATCACACTACTAATTGGTCTGGAGAATTCTCGAGTACGACACATAGAGGAGATGTTCATTTGTAA

Protein sequence

MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLSDHSKNNDLENVDPLESTSHEELNEDLGMGVEPNDWQAYGFQRDEWKNSIEEDINEVGKHHTTNWSGEFSSTTHRGDVHL

Homology

[Close]

BLAST of Carg28179 vs. NCBI nr
Match: KAG7035972.1 (hypothetical protein SDJN02_02772, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221.1 bits (562), Expect = 6.1e-54
Identity = 117/144 (81.25%), Postives = 124/144 (86.11%), Query Frame = 0


Query: 1   MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVL 60
           MEMREDS QR RRI QE AA  LY EVPQID EDHTSIPDVESSI+QIDTREE DDIGVL
Sbjct: 414 MEMREDSGQRTRRIFQETAANFLYREVPQIDVEDHTSIPDVESSIEQIDTREENDDIGVL 473

Query: 61  SDHS---KNNDLENVDPLESTSHEELNEDLGMGVEPNDWQAYGFQRDEWKNSIEEDINEV 120
           SDHS   ++NDLENVDPLESTSHEELNE+LGMGVEPNDWQ  GFQRDEW+NSIEEDINE 
Sbjct: 474 SDHSGSFQDNDLENVDPLESTSHEELNEELGMGVEPNDWQESGFQRDEWENSIEEDINET 533

Query: 121 G-KHHTTNWSGEFSSTTHRGDVHL 141
             +  TTNWSGEF STTHRGD+HL
Sbjct: 534 QLESITTNWSGEFLSTTHRGDIHL 557

[Close]

BLAST of Carg28179 vs. NCBI nr
Match: XP_023541427.1 (uncharacterized protein LOC111801613 [Cucurbita pepo subsp. pepo] >XP_023541428.1 uncharacterized protein LOC111801613 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 217.2 bits (552), Expect = 8.8e-53
Identity = 116/144 (80.56%), Postives = 123/144 (85.42%), Query Frame = 0


Query: 1   MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVL 60
           MEMREDS QRMRRI QE AA  LY EVPQID EDHTSI DVESSI+QIDTREE DDIGVL
Sbjct: 416 MEMREDSGQRMRRIFQETAANFLYCEVPQIDVEDHTSILDVESSIEQIDTREENDDIGVL 475

Query: 61  SDHS---KNNDLENVDPLESTSHEELNEDLGMGVEPNDWQAYGFQRDEWKNSIEEDINEV 120
           SDHS   ++NDLENVDPLESTSHEELNE+LGMGVEPNDWQ  GFQ DEW+NSIEEDINE 
Sbjct: 476 SDHSGSFQDNDLENVDPLESTSHEELNEELGMGVEPNDWQESGFQLDEWENSIEEDINET 535

Query: 121 G-KHHTTNWSGEFSSTTHRGDVHL 141
             +  TTNWSGEF STTHRGD+HL
Sbjct: 536 QLESITTNWSGEFLSTTHRGDIHL 559

[Close]

BLAST of Carg28179 vs. NCBI nr
Match: XP_022996393.1 (uncharacterized protein LOC111491630 isoform X1 [Cucurbita maxima] >XP_022996394.1 uncharacterized protein LOC111491630 isoform X1 [Cucurbita maxima])

HSP 1 Score: 211.5 bits (537), Expect = 4.8e-51
Identity = 113/144 (78.47%), Postives = 121/144 (84.03%), Query Frame = 0


Query: 1   MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVL 60
           MEMREDS QRMRRI QE AA ILY EVPQI  EDHTS+ DVESSI+QIDT EE DDIGVL
Sbjct: 414 MEMREDSGQRMRRIFQETAANILYREVPQIHVEDHTSVLDVESSIEQIDTHEENDDIGVL 473

Query: 61  SDHS---KNNDLENVDPLESTSHEELNEDLGMGVEPNDWQAYGFQRDEWKNSIEEDINEV 120
           SDHS   ++NDLENVDPLESTSHEELNE+LGMGVEPNDW   GFQ DEW+NSIEEDINE 
Sbjct: 474 SDHSGSFQDNDLENVDPLESTSHEELNEELGMGVEPNDWHESGFQPDEWENSIEEDINET 533

Query: 121 G-KHHTTNWSGEFSSTTHRGDVHL 141
             +  TTNWSGEF STTHRGD+HL
Sbjct: 534 QLESITTNWSGEFLSTTHRGDIHL 557

[Close]

BLAST of Carg28179 vs. NCBI nr
Match: XP_022986254.1 (uncharacterized protein LOC111484063 [Cucurbita maxima] >XP_022986255.1 uncharacterized protein LOC111484063 [Cucurbita maxima] >XP_022986256.1 uncharacterized protein LOC111484063 [Cucurbita maxima] >XP_022986257.1 uncharacterized protein LOC111484063 [Cucurbita maxima])

HSP 1 Score: 169.1 bits (427), Expect = 2.7e-38
Identity = 92/143 (64.34%), Postives = 111/143 (77.62%), Query Frame = 0


Query: 2   EMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLS 61
           EM +DS Q +R ILQE A  +LY E+P+IDAE+HTS+ DVE SIQQ++TR+E  DIG+  
Sbjct: 415 EMTDDSGQDVRSILQETAPNLLYHEIPEIDAENHTSVQDVEPSIQQVNTRDENVDIGLAL 474

Query: 62  DH---SKNNDLENVDPLESTSHEELNEDLGMGVEPNDWQAYGFQRDEWKNSIEEDINEVG 121
           DH    ++NDLENVDP ES SHEELNE+LGM VEPND Q  GFQ DEW+NSIEE+I+E  
Sbjct: 475 DHLGRFQDNDLENVDPQESHSHEELNEELGMRVEPNDRQESGFQHDEWENSIEEEISETQ 534

Query: 122 -KHHTTNWSGEFSSTTHRGDVHL 141
            +   TNWSGEFSSTT+RGD HL
Sbjct: 535 LESIATNWSGEFSSTTYRGDTHL 557

[Close]

BLAST of Carg28179 vs. NCBI nr
Match: XP_022944250.1 (uncharacterized protein LOC111448758 [Cucurbita moschata] >XP_022944251.1 uncharacterized protein LOC111448758 [Cucurbita moschata] >XP_022944253.1 uncharacterized protein LOC111448758 [Cucurbita moschata] >XP_022944254.1 uncharacterized protein LOC111448758 [Cucurbita moschata])

HSP 1 Score: 167.5 bits (423), Expect = 8.0e-38
Identity = 91/143 (63.64%), Postives = 112/143 (78.32%), Query Frame = 0


Query: 2   EMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLS 61
           EM +DS Q +R ILQE A  +LY E+P+IDAE+HTS+ DVE SIQQ++TR+E  DIG++ 
Sbjct: 415 EMTDDSGQDVRSILQETAPILLYHEIPEIDAENHTSVLDVEPSIQQVNTRDENVDIGLVL 474

Query: 62  DH---SKNNDLENVDPLESTSHEELNEDLGMGVEPNDWQAYGFQRDEWKNSIEEDINEVG 121
           DH    ++NDLENVDP ES SHEELNE+LGM VEPND Q  GFQ DEW+NS+EE+I+E  
Sbjct: 475 DHLGRFQDNDLENVDPQESHSHEELNEELGMRVEPNDRQESGFQHDEWENSVEEEISETQ 534

Query: 122 -KHHTTNWSGEFSSTTHRGDVHL 141
            +   TNWSGEFSSTT+RGD HL
Sbjct: 535 LESIATNWSGEFSSTTYRGDTHL 557

[Close]

BLAST of Carg28179 vs. ExPASy TrEMBL
Match: A0A6J1KAM9 (uncharacterized protein LOC111491630 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491630 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.3e-51
Identity = 113/144 (78.47%), Postives = 121/144 (84.03%), Query Frame = 0


Query: 1   MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVL 60
           MEMREDS QRMRRI QE AA ILY EVPQI  EDHTS+ DVESSI+QIDT EE DDIGVL
Sbjct: 414 MEMREDSGQRMRRIFQETAANILYREVPQIHVEDHTSVLDVESSIEQIDTHEENDDIGVL 473

Query: 61  SDHS---KNNDLENVDPLESTSHEELNEDLGMGVEPNDWQAYGFQRDEWKNSIEEDINEV 120
           SDHS   ++NDLENVDPLESTSHEELNE+LGMGVEPNDW   GFQ DEW+NSIEEDINE 
Sbjct: 474 SDHSGSFQDNDLENVDPLESTSHEELNEELGMGVEPNDWHESGFQPDEWENSIEEDINET 533

Query: 121 G-KHHTTNWSGEFSSTTHRGDVHL 141
             +  TTNWSGEF STTHRGD+HL
Sbjct: 534 QLESITTNWSGEFLSTTHRGDIHL 557

[Close]

BLAST of Carg28179 vs. ExPASy TrEMBL
Match: A0A6J1JDJ8 (uncharacterized protein LOC111484063 OS=Cucurbita maxima OX=3661 GN=LOC111484063 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.3e-38
Identity = 92/143 (64.34%), Postives = 111/143 (77.62%), Query Frame = 0


Query: 2   EMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLS 61
           EM +DS Q +R ILQE A  +LY E+P+IDAE+HTS+ DVE SIQQ++TR+E  DIG+  
Sbjct: 415 EMTDDSGQDVRSILQETAPNLLYHEIPEIDAENHTSVQDVEPSIQQVNTRDENVDIGLAL 474

Query: 62  DH---SKNNDLENVDPLESTSHEELNEDLGMGVEPNDWQAYGFQRDEWKNSIEEDINEVG 121
           DH    ++NDLENVDP ES SHEELNE+LGM VEPND Q  GFQ DEW+NSIEE+I+E  
Sbjct: 475 DHLGRFQDNDLENVDPQESHSHEELNEELGMRVEPNDRQESGFQHDEWENSIEEEISETQ 534

Query: 122 -KHHTTNWSGEFSSTTHRGDVHL 141
            +   TNWSGEFSSTT+RGD HL
Sbjct: 535 LESIATNWSGEFSSTTYRGDTHL 557

[Close]

BLAST of Carg28179 vs. ExPASy TrEMBL
Match: A0A6J1FXV7 (uncharacterized protein LOC111448758 OS=Cucurbita moschata OX=3662 GN=LOC111448758 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.9e-38
Identity = 91/143 (63.64%), Postives = 112/143 (78.32%), Query Frame = 0


Query: 2   EMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVLS 61
           EM +DS Q +R ILQE A  +LY E+P+IDAE+HTS+ DVE SIQQ++TR+E  DIG++ 
Sbjct: 415 EMTDDSGQDVRSILQETAPILLYHEIPEIDAENHTSVLDVEPSIQQVNTRDENVDIGLVL 474

Query: 62  DH---SKNNDLENVDPLESTSHEELNEDLGMGVEPNDWQAYGFQRDEWKNSIEEDINEVG 121
           DH    ++NDLENVDP ES SHEELNE+LGM VEPND Q  GFQ DEW+NS+EE+I+E  
Sbjct: 475 DHLGRFQDNDLENVDPQESHSHEELNEELGMRVEPNDRQESGFQHDEWENSVEEEISETQ 534

Query: 122 -KHHTTNWSGEFSSTTHRGDVHL 141
            +   TNWSGEFSSTT+RGD HL
Sbjct: 535 LESIATNWSGEFSSTTYRGDTHL 557

[Close]

BLAST of Carg28179 vs. ExPASy TrEMBL
Match: A0A6J1CG48 (uncharacterized protein LOC111011121 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111011121 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 8.0e-36
Identity = 89/143 (62.24%), Postives = 107/143 (74.83%), Query Frame = 0


Query: 1   MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVL 60
           ME R+DS Q MRRILQE AA ILY E+PQ+DAEDH+++PDVE SIQ   T E   DIG+L
Sbjct: 405 METRDDSGQSMRRILQETAANILYREIPQVDAEDHSNVPDVEPSIQHAYTHENV-DIGLL 464

Query: 61  SDHSKN--NDLENVDPLESTSHEELNEDLGMGVEPNDWQAYGFQRDEWKNSIEEDINEVG 120
             HS +  +DLEN+DP ESTSHEEL+E+LGMG EPND Q + FQ + W+NS EEDINE  
Sbjct: 465 LAHSGSFQDDLENIDPRESTSHEELSEELGMGGEPNDRQDFVFQHNGWENSTEEDINETQ 524

Query: 121 -KHHTTNWSGEFSSTTHRGDVHL 141
            +   T WSGEF ST +RGD+HL
Sbjct: 525 LESIATTWSGEFLSTAYRGDIHL 546

[Close]

BLAST of Carg28179 vs. ExPASy TrEMBL
Match: A0A6J1CGY0 (uncharacterized protein LOC111011121 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011121 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 8.0e-36
Identity = 89/143 (62.24%), Postives = 107/143 (74.83%), Query Frame = 0


Query: 1   MEMREDSRQRMRRILQEIAAKILYLEVPQIDAEDHTSIPDVESSIQQIDTREEYDDIGVL 60
           ME R+DS Q MRRILQE AA ILY E+PQ+DAEDH+++PDVE SIQ   T E   DIG+L
Sbjct: 423 METRDDSGQSMRRILQETAANILYREIPQVDAEDHSNVPDVEPSIQHAYTHENV-DIGLL 482

Query: 61  SDHSKN--NDLENVDPLESTSHEELNEDLGMGVEPNDWQAYGFQRDEWKNSIEEDINEVG 120
             HS +  +DLEN+DP ESTSHEEL+E+LGMG EPND Q + FQ + W+NS EEDINE  
Sbjct: 483 LAHSGSFQDDLENIDPRESTSHEELSEELGMGGEPNDRQDFVFQHNGWENSTEEDINETQ 542

Query: 121 -KHHTTNWSGEFSSTTHRGDVHL 141
            +   T WSGEF ST +RGD+HL
Sbjct: 543 LESIATTWSGEFLSTAYRGDIHL 564

The following BLAST results are available for this feature:

BLAST of Carg28179 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035972.1	6.1e-54	81.25	hypothetical protein SDJN02_02772, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023541427.1	8.8e-53	80.56	uncharacterized protein LOC111801613 [Cucurbita pepo subsp. pepo] >XP_023541428....	[more]
XP_022996393.1	4.8e-51	78.47	uncharacterized protein LOC111491630 isoform X1 [Cucurbita maxima] >XP_022996394...	[more]
XP_022986254.1	2.7e-38	64.34	uncharacterized protein LOC111484063 [Cucurbita maxima] >XP_022986255.1 uncharac...	[more]
XP_022944250.1	8.0e-38	63.64	uncharacterized protein LOC111448758 [Cucurbita moschata] >XP_022944251.1 unchar...	[more]

BLAST of Carg28179 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg28179 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KAM9	2.3e-51	78.47	uncharacterized protein LOC111491630 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JDJ8	1.3e-38	64.34	uncharacterized protein LOC111484063 OS=Cucurbita maxima OX=3661 GN=LOC111484063...	[more]
A0A6J1FXV7	3.9e-38	63.64	uncharacterized protein LOC111448758 OS=Cucurbita moschata OX=3662 GN=LOC1114487...	[more]
A0A6J1CG48	8.0e-36	62.24	uncharacterized protein LOC111011121 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CGY0	8.0e-36	62.24	uncharacterized protein LOC111011121 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Carg28179 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28179-RA	Carg28179-RA	mRNA