Carg28161 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg28161
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionkeratin, type II cytoskeletal 2 epidermal isoform X1
LocationCarg_Chr09: 9476902 .. 9483396 (+)
RNA-Seq ExpressionCarg28161
SyntenyCarg28161
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATATATATATATATATATTCAATATAATTGTTTTTTTAAAATAAAAATTTAAATTTAAGAAGAAATTATAATTTATACCTAAAACCATATTTGACAAATTTGGCGAATGAAAAGAAAAAGATATCAGAAATGCCTCGAAACATGAACGGAAGCAGACACGAAGGCGGAGAAGATGAGAGCGGAATGCTGTGGAAGCTTCCAGTTTTGAAATCTTCCAGAATCGGAAGGTTAGGTCCCGCCTTCGGCCTCGGCGTTGGTTGTGGCGTCGGCTTTGGCATCGGCCTCGTCGGAGGTTAATAATTCTTCATCATTTCTCTCTTTCCTTTTTGTTTCAGTCGTAACTCGCTTGTTATTCTCCTGTTGGATTCCTTTTGTTTTACTACTTTAATTATGTTGTTAAAATCAATTAGATTAGCGGAATCACTTTGTTTAGTGCGTATTAATCTTTGGTGAATTGAAAATTTGCCTTATGGATTGTGTTCTACGCTGCAACTTGCTGATTGCTTTAGTCGGACTATGCTTCTTGAATCAGAGATTAAACAAGCATTTCTTCATCATTTGTCTTTTTCCTTTTTGTTTCAGTCGTAACTCGCTTGTTTTTCCTCTGTTGGATTCCTTTCGTTTTACTACTTCAATTATGTTGCATAAAATCAATTTGATCAGCGGAATCACTTTGTTTAATGCGTATTAATCGACTACTTTGATGAGGCTTAGCTATTGGTGAATTGAAAATGTTGCCTTATGGATTGTGTTAACCCTGCAACTTGCTGATTGCTTTAGTCGGAGATATGCTTGTTGACTCAGAGATTGAGGTAGGTTGGGTGGGGTTATTCTGTCTGTAGTGTTTGTTTGGTTTAGGCTGATAATCGTTTCAAGATGATTTAATTGGTATTAGTGCCTTTTACCGTCTTTGACTTTTGTCCTTCAATATTACATGTTTCTTGCATTCTGGTTTAGAGAATATGGGTGTTTGGATGGTATGTACGTTGCCACGCTTGCTGTTGAAATTCTTTAGCCCTATGATTTTTTCCCCAAGTCTAGGAAGCATTTGACCTTGTTTTGATGGACCAGACGCAGATCACAACATTTCTGTTTTTCCAAAAATTAATGATAGAAAGGTTCTATGGTTAAAATATATTTTAACACATTGCGACGTTTTATGAATGTTGAAATCTGTAAAAGCTTAGACTTGAAGAAGGGAATGCTATGGATGAAATTCAGTTCGAAAATCACCAAAAGGAATAAAGTGTACTGCAGAGCAAATAACTAATTTTCGTACAAAATAGCTAAAACATGAATCCCCAAGTAGGCCCAGATGTAGTTCATTCAGATTTCAGGTGGGTATCTTTTCATTTTCTTTATTAAGATCTTCTCTTGTCTGTTTTTCTTTATTTGTTTCTTCTGTTTCTTTTAGTTTATAAGTTGTGTGCTTTAACATAATTTTTATTTTATTTTTGTCCTTCGGCGAGTGCAATGTATTTTTTATCTTTCAAGTGGAGAGAGGATGTATGAGCGGATAATACTTCTGCATGACTTATCTGCATACTGTTAAACTATTTTGCGCTTCATCTCTTATTGTTCAACAATTTAGAACATGTCTTTGATGGATACATCCGAGAAAAAAATAACTAAATGTAGTATAGTGGCTGTGGAATTTATGGATGCAATGTCTTCAAGCAGTTTATTTGGACGCAAGTGTTTTTTTTATGTGTATGTATGGTGTAAATCCAACATCAGAGCTGTAACCATCCACACAAGTACATCACCCTACCCGTTTTTTTTCGTCTCTTTCATTGTTTTAAGTCAGCAGATATATCTATATCTTATCATCTACTAGTATAAATATATATAGTCATATATATATTGCTTTTTGTTAAAATTAATGGTGGAGCTCTCATGTTTAGTCGCGAGGGTGGGTTTGAATTTTATTCATCTCAACCTTTGGGACTCTACAAGCATACTGCTAACATGGTTTTAAACTCAATTCAATCTGTTGAAAGATTTTTTGGTGCCAAAGCTCAAAATGTATAAGACTTTAAAAATTAGAATTCACATTAAGTATTACATGTTGATGAGGAATAAATTCTCTCTATCCATATAGTATGATTTAGTATAAAGAAGATTTTTCTTTTCTTGATACGTAATACAATTTATAAATGAAAAAAAGAGGCATCAAAAGGAACTGGAAGATTAAAGCGTCTCTGGGTCTCTCACATACACACTTGCGTAACCACACATGCATAGAAGAAGGAAAACTATCATGGATTTGGGTTGTGGGTAGGAAGGTAGGCTTGAGTGTCAGCCATAAATGGTAATCACTATGAAATCGTTCTTTGAACCTTGAACTGTGGTGAACTATCCTTGTTTAATTTAAACTAAACATAGATGTATTTGCAAACATTTGTTCATCCATTCTAGTGCTGGATTTGGTCCAGGATTCCTGCTACAACTTGGCTTTGGTGTCTTGGTGTCTGGATGTGGACTTGGCTTAGGATTTGGCTATGGTGCGGGCAGGGGCATTGCGCAAGATGACAACGGAGATATACTCTAACGTTGGGGATCTGTTAAATGGTCGTCAAAGTATTTTTCCTCAGTAAGTTCTAACTAACTGTTTTCAACTTTCTGACTATCCTGTTCTGTTTCCTGCATGCATTACTTACAAGTCAGGGATAATTCCCATTTTTATGCTATCTAGATTTGGTGACCTGCTTTTTCCTAACCATGTATTGACTAAGGTAGCGCAATTTTCCACGCATGTAAATTCCAAAAATAACCCCCAGTGATCTCTTTCTCTATCTCTACTTGCCTCCACACCTCCACCTCACCTTCATTGAAACTATAACGGCCCAAGCCCACTACTAGCAGATATTGTTCTCTTTGGGCTTTTCCCTTTCGAGGCTTCCGCAAGGCTTATAAAACGCGTCTGCTAGGGACAAGGTTTCCACACCTTATATAAGCGGCTGTTTCGCTTCTCCTCCCCAACCACTGTGTGGGATAGCATAATCACCCCCCTTCAGGCCCTGCGTCTCGTTGGCACTCGTTCTTTTCTCCATCCATGTGGGATTCCCCCCAAGTCCACCCCTTCGGGGCCCAGCGTCCTTATTGGCACACCGCTCGTGTCTACCCCCTGTTGGGGAACAACTTCCTTGCTGGCCACATCGCCCGGTGGTTTAGACTCTAAATACCATTTTGTAATGGCCCAGTCCACACGCAGTAGGTAATTGTTATTCTTTTGGGCTTTCTTCCTTCTCGAACTTTAAAATGCGCATTGTTTGGGAACAGATTCTCCACCCAACCAACGCTTGGGATTCGATCACCGAGAAACCAATGACACTTTCACTTAGGCCACTGTACTAACCACCCATCACATGAATAAGTGAACAGAGAAGTCGATAGTAGATACAGAGGTAGTTGTGTTTGAATGTTTTCTGAGGTAAAGAGACAGAGAGCTTGCTTCATAACCATCCATTGGTAAATCTCTTCGATTGTTGAGTTTGATACCATTCCAAACCTCCTAACTGCCCAATTATATCAGAAAATTTTTAAGGAGGAACTTATTTGACAAAACAAACTATTTGGTGTCATATATCATCAAACCAAAGGGGTAGACTTGCAACGGTTTGCCCTTCTTCAACATTAACAAAGGAAGTCGCACAAACTTTTCATACCTGTAGGAGAAGATAGAATCAGGGTGGTAGCTTTTTTTTCAATTTTCCATTAACCAACCACCCACTCTTCTCCATCAATTAAAAACTAGTATAAACCAGAGCCCCTCTTCTCCTGGATCAGGAAAGGCAACGTTTAAACCAACAACCTTGCCCCTTCCCCGCAATTCATAAAAACAGCCCACCACCTCCTACAAAGCGCTGGGGGACTTGTAAGTTATCGTCCTTATAATGATATATGATATTTAAAGGAAGAAATTAGCCAGTAAGGCATACGAAACTCTTCGCTTTATTTTGAGGGCTGATAAACTTCTCTTTCCTTTAACTTTCTAGATAAAGATAAACATGAAAAATTTCTACACCTTTCCTTATTTACCTATATGCGGCCTTTCCCCCCAACATTTCCTATATAGTGATCCCACGGGTCACCCTCACCCTCTCTAACTCTCAGAATGGTTATTTCACCTTTTTGCCTTCTAATCGTAAGTAAGAATTCTGGGTTCTCACATAACCACTTAAGTACAGTTCCTGTATACATAATTGGACATCATATTTTGTTTTATGATGTTGGAGACCTATCCATCGTCACTTAGTGACATACTTTCACGATGATTGGTATTTGAAGTTATGTCATGAGAGAAAAAGAATTTTGTACTTCTTGAGTGATGAGAAAGACTCAACTTATACAGAGGATTACCTATTCATTGTGCTAGGAATAAGCTTTATCACCTAAACTTCTGTCCATCAAATCGCCAAGGTAAGCCATTTAAAAATGCATTCTTTTACACCAAGTTGAAATGGTGGCAAATCTGATTTGTTGCGATAGATAGGAAGTACCCGAATAGTATTTCACTTGGCGTGTAGCAAAGATTTCCTGATAGCCAATCTAGATTTGTTGCAATAGAGATATGTAACTATGCTACTTCAATTTGGGGCTCTTGACTGGAGCTCAATATTTCCATGGCCATAATATGTCTGGTGTAGCTCAATAGTTGAAGATGTGTTGTTCCATTCCCCTTCGAAGACAGCGGAGGTGTTTTGTTGAGGACTACCTTTTGAGTTGCTTTATGGAACATTTTGCGGGAGAGAAACAAATGGATTTTTAAGGAGTAGAGCGTGTGTTGGGGGAAGCTCTCTCTTACAGCCAGCTTCTGTAACCAAATGGTTTAATTTCTTCTTTCTTTCTTTTTCTTAACCTTCGGAGACCTTTATTCTGGGGCGGGGCTCATTTGACTTGCCAATGCATTGCACAGAACTCTCCCTGCCGCCTGTGTTTACTAAACTACTGGTCTAAACCGACTGTTATGCCTGACCCTGAAAAGAAATTTAGATCATAAGAGATTTGGGATCACGTGCATTGGAAATGTAAATATACTACTATAATTTGGGCTCTTTTCTGGAGGGAGACCTTCCATATTTCCATCCAATAGTCCCAATGTTAGGAATCACGACTCTTCTCAATAATATGATATTGTCCACTTTGAGCATAAGCTCTCGTGGCTTTACTTTGAGCTTCTCCAAAGGGCCTCATACCAACGAAGATATATTCCTTACTTATAAAACCCATGATCATTCCCTAAATTAGCCAATGTGGGACTCCCTCCCAACAATCCTCTACACCCAATATAAGTCTCGTGCTGCTCAATGATTGAAGAGGTGCTGTTCCATTCACCTTTCTTAGACAACCGAGGCATTTTGTTGAGGACTGCCCTTCTAGTTGTTTTATGGAACATTTAGCTGGAGAGAAACAAATGGATTCTTGGGAGAGGATGTTGGGGGGAAATTTTCTCTTTAGCCATTTTCAAAGTGTTTATATTTTTTCATTCTTTCTTTTTTTTGAAAGAAAAACAGTTTCATTGGAATGGTAGATGAAATAGTGGAGTAAAAGCTCCAAACAACTAGAGTGAATTACCCCAAATAAAAAAATAAAAAAAAACTCTCCAATGGGCGATGAAATAAAAAATGCTATTATGATCAAAAGAGTACTTATTCTTGCACCAGAAAGAACAAGTTCTAAGAGTTGAAAACAAAGAACTCATATTAGTTGCAATATTATCTTTGACATTTAAAAAAATATTTTGAAACTAAGGTATTATTGCAATTTTGGAGAGAATAGAGTACATTTTTAAAAATATGGCAAGGTTTTAACTGTTTTCGTAATTTAGTCTCTTTTCTTTTATCTTATTACTGAATCATTGATGTACAACTTCTTCACGGACGGTGGATTAAACGCCTATTTTTGAAGTTCTTAAAAGCAATCGTGTGCTAGTGAGATGCACATTTGATACTCAGCTGGCTTTATGGTGCTAGCTATAATGTGTTCTAGCTGCTGAGGTTGATTGCCATGGTTTTTTCCCGTACAAATTCCTAGCACCCTTCTATTTCTTGTTCCTGTTCGACTTGGGGGACGCTATCTTGGCCACGTCAATTGTTTTGGTAAAATCATTGAAACTAACCGTTGCTTGTCGAGATCGTTGAACTACGATTAGGATAATAATTCCCTTTTGAAATCATCCTCTTGAGTTGAAACACAGGATTAAGAATGATTTTCTCAGCTGAAATAACTGGAATCCAAACAATCAGTGAAGCTAGAATACAACTGGTGGCATTTCCAAGATGGCTTGAACTGTCTTTATTCGCCTTTTTCATATGTAATCTGTGCAGCTATAGAAGAACTTTTATTATTCTGTCATCAAGAAACATTTCTCGACTTCCATTTTTACTTTATCAGTAGGGACGAGATCGGCGCGCTTGTGGACGAGCTCGCCCTCAATACAAAGAAGCTTATTCGAGTTACCGCACAGGAGATTGACAAGTGGAAAAGATGA

mRNA sequence

ATATATATATATATATATATTCAATATAATTGTTTTTTTAAAATAAAAATTTAAATTTAAGAAGAAATTATAATTTATACCTAAAACCATATTTGACAAATTTGGCGAATGAAAAGAAAAAGATATCAGAAATGCCTCGAAACATGAACGGAAGCAGACACGAAGGCGGAGAAGATGAGAGCGGAATGCTGTGGAAGCTTCCAGTTTTGAAATCTTCCAGAATCGGAAGGTTAGGTCCCGCCTTCGGCCTCGGCGTTGGTTGTGGCGTCGGCTTTGGCATCGGCCTCGTCGGAGGATTCCTGCTACAACTTGGCTTTGGTGTCTTGGTGTCTGGATGTGGACTTGGCTTAGGATTTGGCTATGCTATAGAAGAACTTTTATTATTCTGTCATCAAGAAACATTTCTCGACTTCCATTTTTACTTTATCAGTAGGGACGAGATCGGCGCGCTTGTGGACGAGCTCGCCCTCAATACAAAGAAGCTTATTCGAGTTACCGCACAGGAGATTGACAAGTGGAAAAGATGA

Coding sequence (CDS)

ATGCCTCGAAACATGAACGGAAGCAGACACGAAGGCGGAGAAGATGAGAGCGGAATGCTGTGGAAGCTTCCAGTTTTGAAATCTTCCAGAATCGGAAGGTTAGGTCCCGCCTTCGGCCTCGGCGTTGGTTGTGGCGTCGGCTTTGGCATCGGCCTCGTCGGAGGATTCCTGCTACAACTTGGCTTTGGTGTCTTGGTGTCTGGATGTGGACTTGGCTTAGGATTTGGCTATGCTATAGAAGAACTTTTATTATTCTGTCATCAAGAAACATTTCTCGACTTCCATTTTTACTTTATCAGTAGGGACGAGATCGGCGCGCTTGTGGACGAGCTCGCCCTCAATACAAAGAAGCTTATTCGAGTTACCGCACAGGAGATTGACAAGTGGAAAAGATGA

Protein sequence

MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGFLLQLGFGVLVSGCGLGLGFGYAIEELLLFCHQETFLDFHFYFISRDEIGALVDELALNTKKLIRVTAQEIDKWKR
Homology
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BLAST of Carg28161 vs. NCBI nr
Match: KAG7025114.1 (hypothetical protein SDJN02_13937 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264.6 bits (675), Expect = 4.5e-67
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 

Query: 1   MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGFLLQL 60
           MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGFLLQL
Sbjct: 1   MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGFLLQL 60

Query: 61  GFGVLVSGCGLGLGFGYAIEELLLFCHQETFLDFHFYFISRDEIGALVDELALNTKKLIR 120
           GFGVLVSGCGLGLGFGYAIEELLLFCHQETFLDFHFYFISRDEIGALVDELALNTKKLIR
Sbjct: 61  GFGVLVSGCGLGLGFGYAIEELLLFCHQETFLDFHFYFISRDEIGALVDELALNTKKLIR 120

Query: 121 VTAQEIDKWKR 132
           VTAQEIDKWKR
Sbjct: 121 VTAQEIDKWKR 131

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BLAST of Carg28161 vs. NCBI nr
Match: XP_022932820.1 (keratin, type II cytoskeletal 2 epidermal isoform X2 [Cucurbita moschata])

HSP 1 Score: 181.4 bits (459), Expect = 5.0e-42
Identity = 103/144 (71.53%), Postives = 111/144 (77.08%), Query Frame = 0 

Query: 1   MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF---- 60
           MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGG     
Sbjct: 1   MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 61  ---LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCHQETFLDFHFYFISRDEIGAL 120
               LQLGFG L +GCG+GLGFGY      A ++   + +    L+       +DEIGAL
Sbjct: 61  GIPGLQLGFG-LGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGRQSIFPQDEIGAL 120

Query: 121 VDELALNTKKLIRVTAQEIDKWKR 132
           VDELALNTKKLIRVTAQEIDKWKR
Sbjct: 121 VDELALNTKKLIRVTAQEIDKWKR 143

[Close]
BLAST of Carg28161 vs. NCBI nr
Match: XP_022932819.1 (keratin, type II cytoskeletal 2 epidermal isoform X1 [Cucurbita moschata])

HSP 1 Score: 180.3 bits (456), Expect = 1.1e-41
Identity = 105/145 (72.41%), Postives = 112/145 (77.24%), Query Frame = 0 

Query: 1   MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF---- 60
           MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGG     
Sbjct: 1   MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 61  ---LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCHQETFLD-FHFYFISRDEIGA 120
               LQLGFG L +GCG+GLGFGY      A ++   + +    L+     F  RDEIGA
Sbjct: 61  GIPGLQLGFG-LGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGRQSIFPHRDEIGA 120

Query: 121 LVDELALNTKKLIRVTAQEIDKWKR 132
           LVDELALNTKKLIRVTAQEIDKWKR
Sbjct: 121 LVDELALNTKKLIRVTAQEIDKWKR 144

[Close]
BLAST of Carg28161 vs. NCBI nr
Match: XP_023521209.1 (fibroin heavy chain isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.9 bits (455), Expect = 1.5e-41
Identity = 102/144 (70.83%), Postives = 111/144 (77.08%), Query Frame = 0 

Query: 1   MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF---- 60
           MPRNMNGSRHEG EDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGG     
Sbjct: 1   MPRNMNGSRHEGREDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 61  ---LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCHQETFLDFHFYFISRDEIGAL 120
               LQLGFG L +GCG+GLGFGY      A ++   + +    L+ H     +DEIGAL
Sbjct: 61  GIPGLQLGFG-LGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGHQSIFPQDEIGAL 120

Query: 121 VDELALNTKKLIRVTAQEIDKWKR 132
           VDELALNTKKLIRVTA+EIDKWKR
Sbjct: 121 VDELALNTKKLIRVTAREIDKWKR 143

[Close]
BLAST of Carg28161 vs. NCBI nr
Match: XP_023521208.1 (ATP-dependent RNA helicase glh-2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.7 bits (452), Expect = 3.2e-41
Identity = 104/145 (71.72%), Postives = 112/145 (77.24%), Query Frame = 0 

Query: 1   MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF---- 60
           MPRNMNGSRHEG EDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGG     
Sbjct: 1   MPRNMNGSRHEGREDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 61  ---LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCHQETFLDFH-FYFISRDEIGA 120
               LQLGFG L +GCG+GLGFGY      A ++   + +    L+ H   F  RDEIGA
Sbjct: 61  GIPGLQLGFG-LGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGHQSIFPHRDEIGA 120

Query: 121 LVDELALNTKKLIRVTAQEIDKWKR 132
           LVDELALNTKKLIRVTA+EIDKWKR
Sbjct: 121 LVDELALNTKKLIRVTAREIDKWKR 144

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BLAST of Carg28161 vs. ExPASy TrEMBL
Match: A0A6J1F360 (keratin, type II cytoskeletal 2 epidermal isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111439279 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.4e-42
Identity = 103/144 (71.53%), Postives = 111/144 (77.08%), Query Frame = 0 

Query: 1   MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF---- 60
           MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGG     
Sbjct: 1   MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 61  ---LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCHQETFLDFHFYFISRDEIGAL 120
               LQLGFG L +GCG+GLGFGY      A ++   + +    L+       +DEIGAL
Sbjct: 61  GIPGLQLGFG-LGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGRQSIFPQDEIGAL 120

Query: 121 VDELALNTKKLIRVTAQEIDKWKR 132
           VDELALNTKKLIRVTAQEIDKWKR
Sbjct: 121 VDELALNTKKLIRVTAQEIDKWKR 143

[Close]
BLAST of Carg28161 vs. ExPASy TrEMBL
Match: A0A6J1EY31 (keratin, type II cytoskeletal 2 epidermal isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439279 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 5.4e-42
Identity = 105/145 (72.41%), Postives = 112/145 (77.24%), Query Frame = 0 

Query: 1   MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF---- 60
           MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGG     
Sbjct: 1   MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 61  ---LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCHQETFLD-FHFYFISRDEIGA 120
               LQLGFG L +GCG+GLGFGY      A ++   + +    L+     F  RDEIGA
Sbjct: 61  GIPGLQLGFG-LGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGRQSIFPHRDEIGA 120

Query: 121 LVDELALNTKKLIRVTAQEIDKWKR 132
           LVDELALNTKKLIRVTAQEIDKWKR
Sbjct: 121 LVDELALNTKKLIRVTAQEIDKWKR 144

[Close]
BLAST of Carg28161 vs. ExPASy TrEMBL
Match: A0A6J1IA95 (keratin, type II cytoskeletal 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472645 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.9e-40
Identity = 99/144 (68.75%), Postives = 110/144 (76.39%), Query Frame = 0 

Query: 1   MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF---- 60
           MPRNMNGSR EGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGG     
Sbjct: 1   MPRNMNGSRREGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 61  ---LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCHQETFLDFHFYFISRDEIGAL 120
               LQLGFG L +GCG+GLGFGY      A ++   + +    L+       +DEIGA+
Sbjct: 61  GIPGLQLGFG-LGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGRQSIFPQDEIGAV 120

Query: 121 VDELALNTKKLIRVTAQEIDKWKR 132
           VDELALNTKKLI+VTA+EIDKWKR
Sbjct: 121 VDELALNTKKLIQVTAKEIDKWKR 143

[Close]
BLAST of Carg28161 vs. ExPASy TrEMBL
Match: A0A6J1ICW2 (keratin, type II cytoskeletal 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472645 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 8.6e-40
Identity = 101/145 (69.66%), Postives = 111/145 (76.55%), Query Frame = 0 

Query: 1   MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF---- 60
           MPRNMNGSR EGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGG     
Sbjct: 1   MPRNMNGSRREGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 61  ---LLQLGFGVLVSGCGLGLGFGY------AIEELLLFCHQETFLD-FHFYFISRDEIGA 120
               LQLGFG L +GCG+GLGFGY      A ++   + +    L+     F  RDEIGA
Sbjct: 61  GIPGLQLGFG-LGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGRQSIFPHRDEIGA 120

Query: 121 LVDELALNTKKLIRVTAQEIDKWKR 132
           +VDELALNTKKLI+VTA+EIDKWKR
Sbjct: 121 VVDELALNTKKLIQVTAKEIDKWKR 144

[Close]
BLAST of Carg28161 vs. ExPASy TrEMBL
Match: A0A1S4E347 (glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103498610 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.4e-34
Identity = 88/145 (60.69%), Postives = 104/145 (71.72%), Query Frame = 0 

Query: 1   MPRNMNGSRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVGGF---- 60
           MPRNMNG+R+  GEDE G+LW LPVLKSSR G LGPAFGLGVGCGVGFGIGLVGG     
Sbjct: 1   MPRNMNGNRNRDGEDERGLLWNLPVLKSSRFGNLGPAFGLGVGCGVGFGIGLVGGAGFGP 60

Query: 61  ---LLQLGFGVLVSGCGLGLGFGYAI------EELLLFCHQETFLDFH-FYFISRDEIGA 120
               LQLGFG L +GCG+GLGFGY +      ++   + +    L  H   F  +D+IGA
Sbjct: 61  GIPGLQLGFG-LGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDVLRGHQSIFPHQDDIGA 120

Query: 121 LVDELALNTKKLIRVTAQEIDKWKR 132
           LVD+L LNTK+LIR T++EIDKWKR
Sbjct: 121 LVDDLVLNTKRLIRATSREIDKWKR 144

[Close]
BLAST of Carg28161 vs. TAIR 10
Match: AT4G10330.1 (glycine-rich protein )

HSP 1 Score: 112.5 bits (280), Expect = 2.6e-25
Identity = 58/131 (44.27%), Postives = 84/131 (64.12%), Query Frame = 0 

Query: 8   SRHEGGEDESGMLWKLPVLKSSRIGRLGPAFGLGVGCGVGFGIGLVG---------GFLL 67
           +R   G+D+ G+LWKLP ++   IG++GPAFGLGVGCG GFG GL+G         G   
Sbjct: 3   NRRRTGDDDKGLLWKLPQVRIRDIGKVGPAFGLGVGCGFGFGAGLIGGVGFGPGVPGLQF 62

Query: 68  QLGFGVLVSGCGLGLGFGYAIEELLLFCHQETFLDFHFYFISRDEIGALVDELALNTKKL 127
            LGFG   +GCG+G+GFGY +     + H  ++  ++    S +E+ +L+DEL ++TKKL
Sbjct: 63  GLGFG---AGCGIGVGFGYGVGRGAAYDHSRSY--YNVGKPSLNEVDSLIDELVVSTKKL 122

Query: 128 IRVTAQEIDKW 130
           ++ T  EIDKW
Sbjct: 123 VKATTNEIDKW 128

[Close]
BLAST of Carg28161 vs. TAIR 10
Match: AT1G66820.1 (glycine-rich protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.0e-04
Identity = 26/55 (47.27%), Postives = 31/55 (56.36%), Query Frame = 0 

Query: 34 LGPAFGLGVGCGVGFGIGLVGGF-----------LLQLGFGVLVSGCGLGLGFGY 78
          +GP  G G+GCG G GIGL GG             + LGFG+   GCG+G GFGY
Sbjct: 39 VGPGIGGGIGCGAGIGIGLSGGLGIGASEGLDHSNVVLGFGI---GCGIGFGFGY 90

The following BLAST results are available for this feature:
BLAST of Carg28161 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025114.14.5e-67100.00hypothetical protein SDJN02_13937 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022932820.15.0e-4271.53keratin, type II cytoskeletal 2 epidermal isoform X2 [Cucurbita moschata][more]
XP_022932819.11.1e-4172.41keratin, type II cytoskeletal 2 epidermal isoform X1 [Cucurbita moschata][more]
XP_023521209.11.5e-4170.83fibroin heavy chain isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023521208.13.2e-4171.72ATP-dependent RNA helicase glh-2 isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg28161 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg28161 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F3602.4e-4271.53keratin, type II cytoskeletal 2 epidermal isoform X2 OS=Cucurbita moschata OX=36... [more]
A0A6J1EY315.4e-4272.41keratin, type II cytoskeletal 2 epidermal isoform X1 OS=Cucurbita moschata OX=36... [more]
A0A6J1IA953.9e-4068.75keratin, type II cytoskeletal 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1ICW28.6e-4069.66keratin, type II cytoskeletal 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A1S4E3472.4e-3460.69glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103498... [more]
BLAST of Carg28161 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G10330.12.6e-2544.27glycine-rich protein [more]
AT1G66820.12.0e-0447.27glycine-rich protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34201GLYCINE-RICH PROTEINcoord: 5..131
NoneNo IPR availablePANTHERPTHR34201:SF1GLYCINE-RICH PROTEINcoord: 5..131

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg28161-RACarg28161-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane