Carg28157 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg28157
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr19: 2806758 .. 2807213 (-)
RNA-Seq ExpressionCarg28157
SyntenyCarg28157
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTCACTCTGTAATGCGTGTTTGGATATTTGCTCATTTGTTATCATCTTTCCTTTTTCTTCTCTCTTTTTACTCCTTCCTTGGATGAATTCCATTCAATGAATGCACAGCCAAGAAGAAAGAAGAACACCTCGTCGTTGATTATTATCTCACCTTTCTTTGTTTTTTCAAGCCTGCTTGGAAGCTCCATGTCCAGGTAGGTATATTCGGTGTTTCATTCTACTCTCCGATTCCTATTTTTGCTTTCGTCTTTTCAGCTTTTTTTTGGTTCATGTGTTGCTGCAGTTTTTTGAGGTTGAAAAATGGTGTTTATGGCAGGAAGGAGGTTTTGGAACTTGAATAATTGCAGTTTTCGAATTCAGAAGCGTTCAGGAAAGTACCAAATCCATTGGTTTTGATAAATTAAGAGATCTGAGAATCAGGATTCCAAGTATTGGAATCGATCGTGTTGATTGA

mRNA sequence

TTCTCACTCTGTAATGCGTGTTTGGATATTTGCTCATTTGTTATCATCTTTCCTTTTTCTTCTCTCTTTTTACTCCTTCCTTGGATGAATTCCATTCAATGAATGCACAGCCAAGAAGAAAGAAGAACACCTCGTCGTTGATTATTATCTCACCTTTCTTTGTTTTTTCAAGCCTGCTTGGAAGCTCCATGTCCAGAAGCGTTCAGGAAAGTACCAAATCCATTGGTTTTGATAAATTAAGAGATCTGAGAATCAGGATTCCAAGTATTGGAATCGATCGTGTTGATTGA

Coding sequence (CDS)

ATGAATGCACAGCCAAGAAGAAAGAAGAACACCTCGTCGTTGATTATTATCTCACCTTTCTTTGTTTTTTCAAGCCTGCTTGGAAGCTCCATGTCCAGAAGCGTTCAGGAAAGTACCAAATCCATTGGTTTTGATAAATTAAGAGATCTGAGAATCAGGATTCCAAGTATTGGAATCGATCGTGTTGATTGA

Protein sequence

MNAQPRRKKNTSSLIIISPFFVFSSLLGSSMSRSVQESTKSIGFDKLRDLRIRIPSIGIDRVD
Homology
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BLAST of Carg28157 vs. NCBI nr
Match: KAG7011452.1 (hypothetical protein SDJN02_26358 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 2.9e-24
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MNAQPRRKKNTSSLIIISPFFVFSSLLGSSMSRSVQESTKSIGFDKLRDLRIRIPSIGID 60
          MNAQPRRKKNTSSLIIISPFFVFSSLLGSSMSRSVQESTKSIGFDKLRDLRIRIPSIGID
Sbjct: 1  MNAQPRRKKNTSSLIIISPFFVFSSLLGSSMSRSVQESTKSIGFDKLRDLRIRIPSIGID 60

Query: 61 RVD 64
          RVD
Sbjct: 61 RVD 63

The following BLAST results are available for this feature:
BLAST of Carg28157 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011452.12.9e-24100.00hypothetical protein SDJN02_26358 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg28157 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg28157 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg28157 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg28157-RACarg28157-RAmRNA