Carg28147 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28147
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription factor DUO1-like
Location	Carg_Chr17: 3824865 .. 3826372 (+)
RNA-Seq Expression	Carg28147
Synteny	Carg28147

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAAGTGGATCACAGGAAGCTTTACGAAAAGGGCCATGGAAATTGGAGGAAGATGAAGTGCTTTTGAATCATGTTAAGCGGTTCGGCCCCAGAGACTGGAGCTCCATTCGATCCAAAGGCCTTCTTCAGAGGACCGGCAAGTCCTGCCGTCTTCGTTGGGTCAATAAACTCAGACCCAACTTGAAAAAGTACGCGATTCTTGCTTGACCGCCATTAATTTACTTTCCTTCCTTTCTGCTTTTGGTTTTTCATGGATGAATTCAAAGGTGTTTGATGTGGGTTGGAGTTTCTTGTTCTGTTTTGTTGTTTGATCTACCCGCACCCGTTTTGTGTTCGAGTTTTTTATTTTTTTTTTTTTTTTTCTTCTTCTTATTATTATTATTTTTGGTGCCTGCAAACTGTTTGTGAAAATGTCTGTAAGAGTAATTTCTAGATTATTGTTCTTCAAGTTGTGTTATGGATTTTTCTTCCACGAGATTCCGATCTAATTTCAAGGAATATGAGTTTGTGTGTTTTGTTTTTCTGTGCTCCACCAAATCCCCCTGTTTTTTTGTCTATGTGCCTGCAAACTGTTTGTGAAAATGTCTGAAAGAGAGATTCCTCGACCATGCTGTAACACTACAAGTTCTATTCATTGCTAATATGTTTGGATTTCTTGTTCTCGCCTATTTCCCCCAAGTGGGTGTAAGTTCACGGCAGAGGAGGAAAGGGTAGTGATAGAATTGCAGGCACAGTTTGGGAACAAATGGGCGAAGATAGCGACTTACTTGCCTGGTCGAACCGATAACGATGTGAAGAATTTTTGGAGTAGCAGGCAGAAGAGATTGGCTAGGCTTCTGCAGAATTCAAGTACTCCTTCCAAATTGCAGAGAAGCACTAGAAAAGAAAAGCCAGTCGATTTTGATGTTCCTTCCATGGAGGTATTTCAGGACTTGTAATGTTGTTGGTTTGATCTTTATCTGTTGGCTAACAAGATCTTATGACTGTTCTTATGTGTTTGGTTTTCTTAAACTTTCAAGGCACCAAAGCTGAGCTCTGCATCAGAGGGGGATGCATCCTCAAGGCCAATGTCGTGTTCATCATCTTTCAGCGCTGATAATGCTGAAGCTGTTGATATGTTCTGCTCGTTACCTGATCTTTACAGACCCAAATTACTTGGTTTTGGTCAAGACTTTCTTCAACCGGAATTCAACCCATTTCCGATTACGATCAAATCCGATCCACAAACCAATTTCCACCCTCTGCCACTAGGTTCAACATTTTCATCTCAAGGACTACTCCATGATCCCAACATTGATGTTTTCCTTGAGCCTTTGGATGTTTCTCAATTAGATAATGAAGTACAGTTTCCGTTCGGGCTACAGTTTTACGAACCAATGGGACGTTGCTCGAGTCATGATGTTGTAAGGGAGAATGTTGAGAACCCAGAAAGCTTCTTCAATGAGTTCCCTGCGGACATATTGGATCAAATAGAACTGCTTCCGAGCTCTCCGGAGAACTGA

mRNA sequence

ATGGAAGAAAGTGGATCACAGGAAGCTTTACGAAAAGGGCCATGGAAATTGGAGGAAGATGAAGTGCTTTTGAATCATGTTAAGCGGTTCGGCCCCAGAGACTGGAGCTCCATTCGATCCAAAGGCCTTCTTCAGAGGACCGGCAAGTCCTGCCGTCTTCGTTGGGTCAATAAACTCAGACCCAACTTGAAAAAAAAAGAAAAGCCAGTCGATTTTGATGTTCCTTCCATGGAGGCACCAAAGCTGAGCTCTGCATCAGAGGGGGATGCATCCTCAAGGCCAATGTCGTGTTCATCATCTTTCAGCGCTGATAATGCTGAAGCTGTTGATATGTTCTGCTCGTTACCTGATCTTTACAGACCCAAATTACTTGGTTTTGGTCAAGACTTTCTTCAACCGGAATTCAACCCATTTCCGATTACGATCAAATCCGATCCACAAACCAATTTCCACCCTCTGCCACTAGGTTCAACATTTTCATCTCAAGGACTACTCCATGATCCCAACATTGATGTTTTCCTTGAGCCTTTGGATGTTTCTCAATTAGATAATGAAGTACAGTTTCCGTTCGGGCTACAGTTTTACGAACCAATGGGACGTTGCTCGAGTCATGATGTTGTAAGGGAGAATGTTGAGAACCCAGAAAGCTTCTTCAATGAGTTCCCTGCGGACATATTGGATCAAATAGAACTGCTTCCGAGCTCTCCGGAGAACTGA

Coding sequence (CDS)

ATGGAAGAAAGTGGATCACAGGAAGCTTTACGAAAAGGGCCATGGAAATTGGAGGAAGATGAAGTGCTTTTGAATCATGTTAAGCGGTTCGGCCCCAGAGACTGGAGCTCCATTCGATCCAAAGGCCTTCTTCAGAGGACCGGCAAGTCCTGCCGTCTTCGTTGGGTCAATAAACTCAGACCCAACTTGAAAAAAAAAGAAAAGCCAGTCGATTTTGATGTTCCTTCCATGGAGGCACCAAAGCTGAGCTCTGCATCAGAGGGGGATGCATCCTCAAGGCCAATGTCGTGTTCATCATCTTTCAGCGCTGATAATGCTGAAGCTGTTGATATGTTCTGCTCGTTACCTGATCTTTACAGACCCAAATTACTTGGTTTTGGTCAAGACTTTCTTCAACCGGAATTCAACCCATTTCCGATTACGATCAAATCCGATCCACAAACCAATTTCCACCCTCTGCCACTAGGTTCAACATTTTCATCTCAAGGACTACTCCATGATCCCAACATTGATGTTTTCCTTGAGCCTTTGGATGTTTCTCAATTAGATAATGAAGTACAGTTTCCGTTCGGGCTACAGTTTTACGAACCAATGGGACGTTGCTCGAGTCATGATGTTGTAAGGGAGAATGTTGAGAACCCAGAAAGCTTCTTCAATGAGTTCCCTGCGGACATATTGGATCAAATAGAACTGCTTCCGAGCTCTCCGGAGAACTGA

Protein sequence

MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKKKEKPVDFDVPSMEAPKLSSASEGDASSRPMSCSSSFSADNAEAVDMFCSLPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDVFLEPLDVSQLDNEVQFPFGLQFYEPMGRCSSHDVVRENVENPESFFNEFPADILDQIELLPSSPEN

Homology

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BLAST of Carg28147 vs. NCBI nr
Match: KAG7013825.1 (Transcription factor DUO1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 487.6 bits (1254), Expect = 5.9e-134
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR 60
           MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR
Sbjct: 1   MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR 60

Query: 61  PNLKKKEKPVDFDVPSMEAPKLSSASEGDASSRPMSCSSSFSADNAEAVDMFCSLPDLYR 120
           PNLKKKEKPVDFDVPSMEAPKLSSASEGDASSRPMSCSSSFSADNAEAVDMFCSLPDLYR
Sbjct: 61  PNLKKKEKPVDFDVPSMEAPKLSSASEGDASSRPMSCSSSFSADNAEAVDMFCSLPDLYR 120

Query: 121 PKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDVFLEPLDVS 180
           PKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDVFLEPLDVS
Sbjct: 121 PKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDVFLEPLDVS 180

Query: 181 QLDNEVQFPFGLQFYEPMGRCSSHDVVRENVENPESFFNEFPADILDQIELLPSSPEN 239
           QLDNEVQFPFGLQFYEPMGRCSSHDVVRENVENPESFFNEFPADILDQIELLPSSPEN
Sbjct: 181 QLDNEVQFPFGLQFYEPMGRCSSHDVVRENVENPESFFNEFPADILDQIELLPSSPEN 238

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BLAST of Carg28147 vs. NCBI nr
Match: KAG6575276.1 (Transcription factor DUO1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 474.9 bits (1221), Expect = 4.0e-130
Identity = 238/260 (91.54%), Postives = 238/260 (91.54%), Query Frame = 0


Query: 1   MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR 60
           MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR
Sbjct: 1   MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR 60

Query: 61  PNLKK----------------------KEKPVDFDVPSMEAPKLSSASEGDASSRPMSCS 120
           PNLKK                      KEKPVDFDVPSMEAPKLSSASEGDASSRPMSCS
Sbjct: 61  PNLKKQKRLARLLQNSTTPSKLQRSTRKEKPVDFDVPSMEAPKLSSASEGDASSRPMSCS 120

Query: 121 SSFSADNAEAVDMFCSLPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGST 180
           SSFSADNAEAVDMFCSLPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGST
Sbjct: 121 SSFSADNAEAVDMFCSLPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGST 180

Query: 181 FSSQGLLHDPNIDVFLEPLDVSQLDNEVQFPFGLQFYEPMGRCSSHDVVRENVENPESFF 239
           FSSQGLLHDPNIDVFLEPLDVSQLDNEVQFPFGLQFYEPMGRCSSHDVVRENVENPESFF
Sbjct: 181 FSSQGLLHDPNIDVFLEPLDVSQLDNEVQFPFGLQFYEPMGRCSSHDVVRENVENPESFF 240

[Close]

BLAST of Carg28147 vs. NCBI nr
Match: XP_022933030.1 (transcription factor DUO1-like [Cucurbita moschata])

HSP 1 Score: 452.2 bits (1162), Expect = 2.8e-123
Identity = 235/305 (77.05%), Postives = 237/305 (77.70%), Query Frame = 0


Query: 1   MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR 60
           MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR
Sbjct: 1   MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR 60

Query: 61  PNLK-------------------------------------------------------- 120
           PNLK                                                        
Sbjct: 61  PNLKNGCKFTAEEERVVIELQAQFGNKWAKIATYLPGRTDNDVKNFWSSRQKRLARLLQN 120

Query: 121 -----------KKEKPVDFDVPSMEAPKLSSASEGDASSRPMSCSSSFSADNAEAVDMFC 180
                      +KEKPVDFDVPSMEAPKLSSAS+GDASSRPMSCSSSFSADNAEAVDMFC
Sbjct: 121 STTPSKLQRSTRKEKPVDFDVPSMEAPKLSSASDGDASSRPMSCSSSFSADNAEAVDMFC 180

Query: 181 SLPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDVF 239
           SLPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDVF
Sbjct: 181 SLPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDVF 240

[Close]

BLAST of Carg28147 vs. NCBI nr
Match: XP_023520920.1 (transcription factor DUO1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 452.2 bits (1162), Expect = 2.8e-123
Identity = 234/305 (76.72%), Postives = 237/305 (77.70%), Query Frame = 0


Query: 1   MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR 60
           MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR
Sbjct: 1   MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR 60

Query: 61  PNLK-------------------------------------------------------- 120
           PNLK                                                        
Sbjct: 61  PNLKNGCKFTAEEERVVIELQAQFGNKWAKIATYLPGRTDNDVKNFWSSRQKRLARLLQN 120

Query: 121 -----------KKEKPVDFDVPSMEAPKLSSASEGDASSRPMSCSSSFSADNAEAVDMFC 180
                      +KEKPVDFDVPSMEAPKLS AS+GDASSRPMSCSSSFSADNAEAVDMFC
Sbjct: 121 STTPSKLQRSTRKEKPVDFDVPSMEAPKLSCASDGDASSRPMSCSSSFSADNAEAVDMFC 180

Query: 181 SLPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDVF 239
           SLPDLYRPKLLGFGQDF+QPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDVF
Sbjct: 181 SLPDLYRPKLLGFGQDFVQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDVF 240

[Close]

BLAST of Carg28147 vs. NCBI nr
Match: XP_022973896.1 (transcription factor DUO1-like [Cucurbita maxima])

HSP 1 Score: 449.5 bits (1155), Expect = 1.8e-122
Identity = 233/305 (76.39%), Postives = 236/305 (77.38%), Query Frame = 0


Query: 1   MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR 60
           MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR
Sbjct: 1   MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR 60

Query: 61  PNLK-------------------------------------------------------- 120
           PNLK                                                        
Sbjct: 61  PNLKNGCKFTAEEERIVIELQAQFGNKWAKIATYLPGRTDNDVKNFWSSRQKRLARLLQN 120

Query: 121 -----------KKEKPVDFDVPSMEAPKLSSASEGDASSRPMSCSSSFSADNAEAVDMFC 180
                      +KEKPVDFDVPSMEAPKLSSAS+GDASSRPMSCSSSFSADNAEAVDMFC
Sbjct: 121 STTPSKLQRSTRKEKPVDFDVPSMEAPKLSSASDGDASSRPMSCSSSFSADNAEAVDMFC 180

Query: 181 SLPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDVF 239
           SLPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNID+F
Sbjct: 181 SLPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDIF 240

[Close]

BLAST of Carg28147 vs. ExPASy Swiss-Prot
Match: A0A178VEK7 (Transcription factor DUO1 OS=Arabidopsis thaliana OX=3702 GN=DUO1 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.0e-25
Identity = 51/58 (87.93%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 7  QEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK 65
          +E ++KGPWK EEDEVL+NHVKR+GPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK
Sbjct: 8  KEEIKKGPWKAEEDEVLINHVKRYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK 65

[Close]

BLAST of Carg28147 vs. ExPASy Swiss-Prot
Match: Q0JB89 (Probable transcription factor MYB58 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB58 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-22
Identity = 50/60 (83.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 5  GSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK 64
          G  EALRKGPW  EEDEVLL HV+  GP DWSSIRSKGLL RTGKSCRLRWVNKLRPNLK
Sbjct: 24 GGGEALRKGPWMAEEDEVLLEHVRTHGPMDWSSIRSKGLLPRTGKSCRLRWVNKLRPNLK 83

[Close]

BLAST of Carg28147 vs. ExPASy Swiss-Prot
Match: Q9S773 (Transcription factor MYB97 OS=Arabidopsis thaliana OX=3702 GN=MYB97 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-12
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 5  GSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK 64
          G    L+KGPW + EDE L  +V+ +G  +W+S++ K  L R GKSCRLRW N LRPNL+
Sbjct: 14 GGGVVLKKGPWTVAEDETLAAYVREYGEGNWNSVQKKTWLARCGKSCRLRWANHLRPNLR 73

Query: 65 K 66
          K
Sbjct: 74 K 74

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BLAST of Carg28147 vs. ExPASy Swiss-Prot
Match: Q9FR97 (Transcription factor MYB65 OS=Arabidopsis thaliana OX=3702 GN=MYB65 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.7e-12
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 5  GSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK 64
          G +  L+KGPW   ED +L+++VK+ G  +W++++    L R GKSCRLRW N LRPNLK
Sbjct: 36 GKRSVLKKGPWTSTEDGILIDYVKKHGEGNWNAVQKHTSLARCGKSCRLRWANHLRPNLK 95

Query: 65 K 66
          K
Sbjct: 96 K 96

[Close]

BLAST of Carg28147 vs. ExPASy Swiss-Prot
Match: Q8W1W6 (Transcription factor MYB33 OS=Arabidopsis thaliana OX=3702 GN=MYB33 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.8e-12
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 9  ALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKK 66
          AL+KGPW   ED++L+++V + G  +W++++    L R GKSCRLRW N LRPNLKK
Sbjct: 31 ALKKGPWSSAEDDILIDYVNKHGEGNWNAVQKHTSLFRCGKSCRLRWANHLRPNLKK 87

[Close]

BLAST of Carg28147 vs. ExPASy TrEMBL
Match: A0A6J1F3T0 (transcription factor DUO1-like OS=Cucurbita moschata OX=3662 GN=LOC111439723 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.3e-123
Identity = 235/305 (77.05%), Postives = 237/305 (77.70%), Query Frame = 0


Query: 1   MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR 60
           MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR
Sbjct: 1   MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR 60

Query: 61  PNLK-------------------------------------------------------- 120
           PNLK                                                        
Sbjct: 61  PNLKNGCKFTAEEERVVIELQAQFGNKWAKIATYLPGRTDNDVKNFWSSRQKRLARLLQN 120

Query: 121 -----------KKEKPVDFDVPSMEAPKLSSASEGDASSRPMSCSSSFSADNAEAVDMFC 180
                      +KEKPVDFDVPSMEAPKLSSAS+GDASSRPMSCSSSFSADNAEAVDMFC
Sbjct: 121 STTPSKLQRSTRKEKPVDFDVPSMEAPKLSSASDGDASSRPMSCSSSFSADNAEAVDMFC 180

Query: 181 SLPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDVF 239
           SLPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDVF
Sbjct: 181 SLPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDVF 240

[Close]

BLAST of Carg28147 vs. ExPASy TrEMBL
Match: A0A6J1I9W2 (transcription factor DUO1-like OS=Cucurbita maxima OX=3661 GN=LOC111472488 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 8.6e-123
Identity = 233/305 (76.39%), Postives = 236/305 (77.38%), Query Frame = 0


Query: 1   MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR 60
           MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR
Sbjct: 1   MEESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR 60

Query: 61  PNLK-------------------------------------------------------- 120
           PNLK                                                        
Sbjct: 61  PNLKNGCKFTAEEERIVIELQAQFGNKWAKIATYLPGRTDNDVKNFWSSRQKRLARLLQN 120

Query: 121 -----------KKEKPVDFDVPSMEAPKLSSASEGDASSRPMSCSSSFSADNAEAVDMFC 180
                      +KEKPVDFDVPSMEAPKLSSAS+GDASSRPMSCSSSFSADNAEAVDMFC
Sbjct: 121 STTPSKLQRSTRKEKPVDFDVPSMEAPKLSSASDGDASSRPMSCSSSFSADNAEAVDMFC 180

Query: 181 SLPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDVF 239
           SLPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNID+F
Sbjct: 181 SLPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDIF 240

[Close]

BLAST of Carg28147 vs. ExPASy TrEMBL
Match: A0A5A7T9S7 (Myb-related protein 308-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002720 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 4.6e-92
Identity = 189/302 (62.58%), Postives = 201/302 (66.56%), Query Frame = 0


Query: 4   SGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNL 63
           S S E LRKGPWKLEEDEVLLNHV RFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNL
Sbjct: 6   SQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNL 65

Query: 64  K----------------------------------------------------------- 123
           K                                                           
Sbjct: 66  KNGCKFTAEEEKMVIELQAQFGNKWAKIATYLPGRTDNDVKNFWSSRQKRLARLLQTSPA 125

Query: 124 --------KKEKPVDFDVPSMEAPKLSSASEGDASSRPMSCSSSFSADNAEAVDMFCSLP 183
                   KKE PVDFD+P+MEAPKLSSASEG++SSRPM C SS  AD  E V+MFCSLP
Sbjct: 126 PSKLQRSAKKETPVDFDIPTMEAPKLSSASEGESSSRPMLCLSSCRADYVEPVNMFCSLP 185

Query: 184 DLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDVFLEP 239
           D Y PKLLGFGQDFLQPEFN F  +IK + Q+NFH   L STFSSQG LHDPN DVFLE 
Sbjct: 186 DSYCPKLLGFGQDFLQPEFNSFQTSIKFEQQSNFHTQSLSSTFSSQG-LHDPNFDVFLET 245

[Close]

BLAST of Carg28147 vs. ExPASy TrEMBL
Match: A0A1S3CB01 (myb-related protein 308-like OS=Cucumis melo OX=3656 GN=LOC103498816 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 4.6e-92
Identity = 189/302 (62.58%), Postives = 201/302 (66.56%), Query Frame = 0


Query: 4   SGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNL 63
           S S E LRKGPWKLEEDEVLLNHV RFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNL
Sbjct: 6   SQSHEVLRKGPWKLEEDEVLLNHVNRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNL 65

Query: 64  K----------------------------------------------------------- 123
           K                                                           
Sbjct: 66  KNGCKFTAEEEKMVIELQAQFGNKWAKIATYLPGRTDNDVKNFWSSRQKRLARLLQTSPA 125

Query: 124 --------KKEKPVDFDVPSMEAPKLSSASEGDASSRPMSCSSSFSADNAEAVDMFCSLP 183
                   KKE PVDFD+P+MEAPKLSSASEG++SSRPM C SS  AD  E V+MFCSLP
Sbjct: 126 PSKLQRSAKKETPVDFDIPTMEAPKLSSASEGESSSRPMLCLSSCRADYVEPVNMFCSLP 185

Query: 184 DLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNFHPLPLGSTFSSQGLLHDPNIDVFLEP 239
           D Y PKLLGFGQDFLQPEFN F  +IK + Q+NFH   L STFSSQG LHDPN DVFLE 
Sbjct: 186 DSYCPKLLGFGQDFLQPEFNSFQTSIKFEQQSNFHTQSLSSTFSSQG-LHDPNFDVFLET 245

[Close]

BLAST of Carg28147 vs. ExPASy TrEMBL
Match: A0A6J1DIB8 (transcription factor DUO1 OS=Momordica charantia OX=3673 GN=LOC111020746 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 2.0e-79
Identity = 176/311 (56.59%), Postives = 192/311 (61.74%), Query Frame = 0


Query: 2   EESGSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 61
           E    +E +RKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP
Sbjct: 3   ERVSEEEVIRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 62

Query: 62  NLK--------------------------------------------------------- 121
           NLK                                                         
Sbjct: 63  NLKNGCKFTAEEERVVIELQARFGNKWAKIATYLPGRTDNDVKNFWSSRQKRLARLLQSS 122

Query: 122 ----------KKEKPVDFDVPSMEAPKLSSASEGDASSRPMSCSSSFSADNAEAVDMFCS 181
                     KKEKPVD + PSME  KLSSASEG++SSRPMSCSSS  A+NA  V++FC 
Sbjct: 123 TTPSKLQRSTKKEKPVDSNAPSMEVQKLSSASEGESSSRPMSCSSSCCAENAAPVNIFCP 182

Query: 182 LPDLYRPKLLGFGQDFLQPEFNPFPITIKSDPQTNF------HPLPLGSTFSSQGLLHDP 239
            PD Y  K LGFG +FLQPEF PF  TIKS+PQT F       PL   STF SQ  LH P
Sbjct: 183 WPDPYSSKFLGFGTNFLQPEFTPFQ-TIKSEPQTEFSSTLHTQPLDDDSTFLSQ-RLHGP 242

[Close]

BLAST of Carg28147 vs. TAIR 10
Match: AT3G60460.1 (myb-like HTH transcriptional regulator family protein )

HSP 1 Score: 115.5 bits (288), Expect = 5.7e-26
Identity = 51/58 (87.93%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 7  QEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK 65
          +E ++KGPWK EEDEVL+NHVKR+GPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK
Sbjct: 5  KEEIKKGPWKAEEDEVLINHVKRYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK 62

[Close]

BLAST of Carg28147 vs. TAIR 10
Match: AT4G26930.1 (myb domain protein 97 )

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-13
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 5  GSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK 64
          G    L+KGPW + EDE L  +V+ +G  +W+S++ K  L R GKSCRLRW N LRPNL+
Sbjct: 14 GGGVVLKKGPWTVAEDETLAAYVREYGEGNWNSVQKKTWLARCGKSCRLRWANHLRPNLR 73

Query: 65 K 66
          K
Sbjct: 74 K 74

[Close]

BLAST of Carg28147 vs. TAIR 10
Match: AT3G11440.1 (myb domain protein 65 )

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-13
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 5  GSQEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK 64
          G +  L+KGPW   ED +L+++VK+ G  +W++++    L R GKSCRLRW N LRPNLK
Sbjct: 36 GKRSVLKKGPWTSTEDGILIDYVKKHGEGNWNAVQKHTSLARCGKSCRLRWANHLRPNLK 95

Query: 65 K 66
          K
Sbjct: 96 K 96

[Close]

BLAST of Carg28147 vs. TAIR 10
Match: AT5G06100.1 (myb domain protein 33 )

HSP 1 Score: 72.4 bits (176), Expect = 5.5e-13
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 9  ALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKK 66
          AL+KGPW   ED++L+++V + G  +W++++    L R GKSCRLRW N LRPNLKK
Sbjct: 31 ALKKGPWSSAEDDILIDYVNKHGEGNWNAVQKHTSLFRCGKSCRLRWANHLRPNLKK 87

[Close]

BLAST of Carg28147 vs. TAIR 10
Match: AT5G26660.1 (myb domain protein 86 )

HSP 1 Score: 72.4 bits (176), Expect = 5.5e-13
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 7  QEALRKGPWKLEEDEVLLNHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKK 66
          ++ LRKG W  EEDE LLN++ R G   WSS+     LQR GKSCRLRW+N LRP+LK+
Sbjct: 9  KQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKR 67

The following BLAST results are available for this feature:

BLAST of Carg28147 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013825.1	5.9e-134	100.00	Transcription factor DUO1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6575276.1	4.0e-130	91.54	Transcription factor DUO1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022933030.1	2.8e-123	77.05	transcription factor DUO1-like [Cucurbita moschata]	[more]
XP_023520920.1	2.8e-123	76.72	transcription factor DUO1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022973896.1	1.8e-122	76.39	transcription factor DUO1-like [Cucurbita maxima]	[more]

BLAST of Carg28147 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A178VEK7	8.0e-25	87.93	Transcription factor DUO1 OS=Arabidopsis thaliana OX=3702 GN=DUO1 PE=1 SV=1	[more]
Q0JB89	2.8e-22	83.33	Probable transcription factor MYB58 OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
Q9S773	2.0e-12	52.46	Transcription factor MYB97 OS=Arabidopsis thaliana OX=3702 GN=MYB97 PE=2 SV=1	[more]
Q9FR97	2.7e-12	50.82	Transcription factor MYB65 OS=Arabidopsis thaliana OX=3702 GN=MYB65 PE=2 SV=1	[more]
Q8W1W6	7.8e-12	52.63	Transcription factor MYB33 OS=Arabidopsis thaliana OX=3702 GN=MYB33 PE=2 SV=1	[more]

BLAST of Carg28147 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F3T0	1.3e-123	77.05	transcription factor DUO1-like OS=Cucurbita moschata OX=3662 GN=LOC111439723 PE=...	[more]
A0A6J1I9W2	8.6e-123	76.39	transcription factor DUO1-like OS=Cucurbita maxima OX=3661 GN=LOC111472488 PE=4 ...	[more]
A0A5A7T9S7	4.6e-92	62.58	Myb-related protein 308-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3CB01	4.6e-92	62.58	myb-related protein 308-like OS=Cucumis melo OX=3656 GN=LOC103498816 PE=4 SV=1	[more]
A0A6J1DIB8	2.0e-79	56.59	transcription factor DUO1 OS=Momordica charantia OX=3673 GN=LOC111020746 PE=4 SV...	[more]

BLAST of Carg28147 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60460.1	5.7e-26	87.93	myb-like HTH transcriptional regulator family protein	[more]
AT4G26930.1	1.5e-13	52.46	myb domain protein 97	[more]
AT3G11440.1	1.9e-13	50.82	myb domain protein 65	[more]
AT5G06100.1	5.5e-13	52.63	myb domain protein 33	[more]
AT5G26660.1	5.5e-13	57.63	myb domain protein 86	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 11..61 e-value: 3.1E-9 score: 46.7
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 7..59 score: 10.46418
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 14..59 e-value: 7.61591E-11 score: 53.7334
None	No IPR available	GENE3D	1.10.10.60		coord: 12..65 e-value: 1.7E-17 score: 65.1
None	No IPR available	PFAM	PF13921	Myb_DNA-bind_6	coord: 15..66 e-value: 9.3E-11 score: 41.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..97
None	No IPR available	PANTHER	PTHR47996	TRANSCRIPTION FACTOR DUO1	coord: 65..237
None	No IPR available	PANTHER	PTHR47996:SF3	TRANSCRIPTION FACTOR DUO1	coord: 65..237
None	No IPR available	PANTHER	PTHR47996	TRANSCRIPTION FACTOR DUO1	coord: 4..65
None	No IPR available	PANTHER	PTHR47996:SF3	TRANSCRIPTION FACTOR DUO1	coord: 4..65
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 7..63 score: 18.481419
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28147-RA	Carg28147-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process