Carg28104 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg28104
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTNFR/CD27/30/40/95 cysteine-rich region
LocationCarg_Chr18: 6149565 .. 6150669 (-)
RNA-Seq ExpressionCarg28104
SyntenyCarg28104
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATAACAAGAGTACTTCAGGCTATGTGTTTATGATGAGTGGAGAAGTAGTAGCTTGGTCTTCTCGTAAGCAGCCTATAGTCACCTTATCAACCATAAAAGTTGAGTTTGTTGCTGCTAATGCCTGTGCATGTCAAGCGGATGAGGAGAATAGTTAAAGAGATTGATCACTCTTAGCGGATGAGGAGAATAGTTAAAGAGATTGATCACTCTTAAATAGAAGGAACAAAGCTAATGTGTGATAATACTTTAACTATTAAGCTATCCAAAAATCCAATTTTACATGGACGTTCTAAACATATAAGAGTAAGATTTCACTTTTTTTTTTTAGAGATTTGAAGTAATCGTCAATTTATTATTTTGTGGTATTTGCCAATCTCAATGCCTCTAAAATGAATTGTTAAAAGAATTTATGTTAATTTCTATTGGTAGAGGTTAAGTTTAGTATTCATTAATATTATCTCTAAACTCTGGGTTGGATGGGCTTATGTCAAAATTTAACCCTCGTTCATTTAAAAAATTGTTTAAAAAATTATAATTAATTAATTTATTAAAACTTATAACTTTAATTAGTATGAATGCGCAAACTAACATTTTTATTTATAAAATTAAATCTAAATGGATTTGAATTGATATAAAATTTTGGAGTTAGTGTGTTAGAAAGAATCGAGGAAACCAAGAAATGCATGGGTGACCACATTAAATAATACTCATAAATACAGACCACAACTATCAACTACCTTCCATCTCTATTAATTTCCTCCCAGTTCTTCCTCATCCAAACCAGTTTCACACATGGACATATCATTACGCTTTCACTCAGCAATCACCGCAGCGGTGATTCTTATGACGGCCATCTGCCTGACTTCCCCTTGCCCGACCGACGCCAAGCTGTGCGGGGACTGCATCAGGGACAGGATGGCGCTGCACTGCCCAGCCTGCGCACCGCCTCTTCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGGTTCAAGGTCGAGGTGCGTTAAGCAGTGCGATGGCGGCGGTGCATGGGCGAGGCTGTGGAGTTGCAAGCGTTGCATGTGGAGTTGCAAGTGCAGTTGTACCTCTTCTTCTTCTTAG

mRNA sequence

ATGGAAGATAACAAGAGTACTTCAGGCTATGTGTTTATGATGAGTGGAGAAGTAGTAGCTTGGTCTTCTCGTAAGCAGCCTATAGTCACCTTATCAACCATAAAAGTTGAGTTTGTTGCTGCTAATGCCTGTGCATGTCAAGCGGATGAGGAGAATACAATCACCGCAGCGGTGATTCTTATGACGGCCATCTGCCTGACTTCCCCTTGCCCGACCGACGCCAAGCTGTGCGGGGACTGCATCAGGGACAGGATGGCGCTGCACTGCCCAGCCTGCGCACCGCCTCTTCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGGTTCAAGGTCGAGGTGCGTTAAGCAGTGCGATGGCGGCGGTGCATGGGCGAGGCTGTGGAGTTGCAAGCGTTGCATGTGGAGTTGCAAGTGCAGTTGTACCTCTTCTTCTTCTTAG

Coding sequence (CDS)

ATGGAAGATAACAAGAGTACTTCAGGCTATGTGTTTATGATGAGTGGAGAAGTAGTAGCTTGGTCTTCTCGTAAGCAGCCTATAGTCACCTTATCAACCATAAAAGTTGAGTTTGTTGCTGCTAATGCCTGTGCATGTCAAGCGGATGAGGAGAATACAATCACCGCAGCGGTGATTCTTATGACGGCCATCTGCCTGACTTCCCCTTGCCCGACCGACGCCAAGCTGTGCGGGGACTGCATCAGGGACAGGATGGCGCTGCACTGCCCAGCCTGCGCACCGCCTCTTCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGGTTCAAGGTCGAGGTGCGTTAAGCAGTGCGATGGCGGCGGTGCATGGGCGAGGCTGTGGAGTTGCAAGCGTTGCATGTGGAGTTGCAAGTGCAGTTGTACCTCTTCTTCTTCTTAG

Protein sequence

MEDNKSTSGYVFMMSGEVVAWSSRKQPIVTLSTIKVEFVAANACACQADEENTITAAVILMTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS
Homology
BLAST of Carg28104 vs. NCBI nr
Match: KAG7012656.1 (hypothetical protein SDJN02_25409, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302.0 bits (772), Expect = 2.8e-78
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0

Query: 1   MEDNKSTSGYVFMMSGEVVAWSSRKQPIVTLSTIKVEFVAANACACQADEENTITAAVIL 60
           MEDNKSTSGYVFMMSGEVVAWSSRKQPIVTLSTIKVEFVAANACACQADEENTITAAVIL
Sbjct: 1   MEDNKSTSGYVFMMSGEVVAWSSRKQPIVTLSTIKVEFVAANACACQADEENTITAAVIL 60

Query: 61  MTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGG 120
           MTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGG
Sbjct: 61  MTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGG 120

Query: 121 AWARLWSCKRCMWSCKCSCTSSSS 145
           AWARLWSCKRCMWSCKCSCTSSSS
Sbjct: 121 AWARLWSCKRCMWSCKCSCTSSSS 144

BLAST of Carg28104 vs. NCBI nr
Match: KAG6573550.1 (hypothetical protein SDJN03_27437, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195.3 bits (495), Expect = 3.7e-46
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 0

Query: 52  NTITAAVILMTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSR 111
           + ITAAVILMTAICLTSPCP DAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSR
Sbjct: 9   SAITAAVILMTAICLTSPCPADAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSR 68

Query: 112 CVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS 145
           CVKQCD GGAWARLWSCKRCMWSCKCSCTSSSS
Sbjct: 69  CVKQCDSGGAWARLWSCKRCMWSCKCSCTSSSS 101

BLAST of Carg28104 vs. NCBI nr
Match: KAG6573554.1 (hypothetical protein SDJN03_27441, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.7 bits (483), Expect = 9.0e-45
Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 0

Query: 52  NTITAAVILMTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSR 111
           + ITA VILMT ICLTSPC  DAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSR
Sbjct: 9   SAITATVILMTGICLTSPCLADAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSR 68

Query: 112 CVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS 145
           CVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS
Sbjct: 69  CVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS 101

BLAST of Carg28104 vs. NCBI nr
Match: XP_019265114.1 (PREDICTED: uncharacterized protein LOC109242719 [Nicotiana attenuata])

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-16
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 0

Query: 53  TITAAVILMTAIC-LTSP---CPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGS 112
           T+   ++++  +C +TSP   CPTD   C +CI + M + CP CAP +RCMA+CLWGG S
Sbjct: 11  TLFGCLLMLMIVCEMTSPSFGCPTDGDGCRNCIVNHMKVDCPKCAPIMRCMAKCLWGGTS 70

Query: 113 RSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTS 142
           R++C K+CD  G + RL  CK C+  CKCSC+S
Sbjct: 71  RTKCTKKCDCKGVYPRLSDCKNCLSQCKCSCSS 103

BLAST of Carg28104 vs. NCBI nr
Match: XP_021632296.1 (uncharacterized protein LOC110629573 [Manihot esculenta] >OAY33565.1 hypothetical protein MANES_13G107300v8 [Manihot esculenta])

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-16
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 0

Query: 58  VILMTAICLTSPCP---TDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVK 117
           ++ +  I  T  CP   T    C +CI D+M   CP+CAP LRCMA+CLWGGGSRS+CVK
Sbjct: 19  ILWLMVISPTVACPLASTAGSGCKECIVDQMKHGCPSCAPILRCMARCLWGGGSRSKCVK 78

Query: 118 QCDGGGAWARLWSCKRCMWSCKCSCTS 142
           +CD  GA  RL  CK+CM  CKCSC +
Sbjct: 79  KCDCDGAMLRLSDCKKCMARCKCSCVA 105

BLAST of Carg28104 vs. ExPASy TrEMBL
Match: A0A0A0LW71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G186620 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.5e-29
Identity = 63/90 (70.00%), Postives = 71/90 (78.89%), Query Frame = 0

Query: 54  ITAAVILMTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCV 113
           IT  VILMTA+ LT  CP + K+C DCIR+RM   CPACAPPLRCMAQCLWGG SRSRCV
Sbjct: 8   ITEVVILMTAVWLTVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCV 67

Query: 114 KQCDGGGAWARLWSCKRCMWSCKCSCTSSS 144
            +CD GGAWA L SCK+C+  CKC C+SSS
Sbjct: 68  NRCDSGGAWASLASCKQCITKCKCRCSSSS 97

BLAST of Carg28104 vs. ExPASy TrEMBL
Match: A0A2C9URU5 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G107300 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 0

Query: 58  VILMTAICLTSPCP---TDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVK 117
           ++ +  I  T  CP   T    C +CI D+M   CP+CAP LRCMA+CLWGGGSRS+CVK
Sbjct: 19  ILWLMVISPTVACPLASTAGSGCKECIVDQMKHGCPSCAPILRCMARCLWGGGSRSKCVK 78

Query: 118 QCDGGGAWARLWSCKRCMWSCKCSCTS 142
           +CD  GA  RL  CK+CM  CKCSC +
Sbjct: 79  KCDCDGAMLRLSDCKKCMARCKCSCVA 105

BLAST of Carg28104 vs. ExPASy TrEMBL
Match: A0A438FE46 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_111219 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.3e-16
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 0

Query: 47  QADEENTITAAVILMTAI--CLTSP---CPTDAKLCGDCIRDRMALHCPACAPPLRCMAQ 106
           + +++ +  AAV+++  +   + SP   CP+D   C DCI ++M   CP+CAP LRCMA+
Sbjct: 5   EKNKQLSTMAAVLMLLLVFWLMISPALGCPSDGSECKDCIVNQMRNGCPSCAPVLRCMAR 64

Query: 107 CLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSC 140
           CLWGG S+S+CVK+CD  G   RL  CK+CM  CKCSC
Sbjct: 65  CLWGGTSKSKCVKRCDCYGGKPRLSDCKKCMSRCKCSC 102

BLAST of Carg28104 vs. ExPASy TrEMBL
Match: A0A6P3ZGK3 (uncharacterized protein LOC107414952 OS=Ziziphus jujuba OX=326968 GN=LOC107414952 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.6e-16
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 0

Query: 54  ITAAVILMTAICLTSP---CPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRS 113
           +   ++L+  + + SP   CP+D + C  CI ++M   CPACAP LRCMA+CLW G SR 
Sbjct: 11  VVPMMLLVVWLMMISPAKGCPSDGRECKTCIVNQMKFGCPACAPILRCMARCLWSGSSRR 70

Query: 114 RCVKQCDGGGAWARLWSCKRCMWSCKCSC 140
            C+K+CD GG   +L  CK+CM  CKCSC
Sbjct: 71  NCIKRCDCGGGTPKLSDCKKCMSRCKCSC 99

BLAST of Carg28104 vs. ExPASy TrEMBL
Match: A0A438JGC2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_014623 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.6e-16
Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = 0

Query: 52  NTITAAVILMTAICLT-SP---CPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGG 111
           +T+ A ++L     LT SP   CP+D   C DCI ++M   CP+CAP L CMA+CLWGG 
Sbjct: 11  STMAAVLMLQLVFWLTISPALSCPSDGSECKDCIVNQMRNVCPSCAPVLSCMARCLWGGA 70

Query: 112 SRSRCVKQCDGGGAWARLWSCKRCMWSCKCSC 140
           S+S+CVK+CD  G   RL  CK+CM  CKCSC
Sbjct: 71  SKSKCVKRCDCYGGKPRLSDCKKCMSRCKCSC 102

BLAST of Carg28104 vs. TAIR 10
Match: AT1G12064.1 (unknown protein; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-11
Identity = 31/72 (43.06%), Postives = 40/72 (55.56%), Query Frame = 0

Query: 71  PTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCD-GGGAWARLWSCK 130
           P     C  C+ ++M   CP C P LRCMA+CLWGG ++ +C   C     A   L  CK
Sbjct: 38  PPSQNSCKTCMAEQMKYDCPKCVPVLRCMARCLWGGVTQRKCTTTCRCDTAAKPSLLECK 97

Query: 131 RCMWSCKCSCTS 142
           RC+  CKCSC +
Sbjct: 98  RCVSRCKCSCAA 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7012656.12.8e-78100.00hypothetical protein SDJN02_25409, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6573550.13.7e-4695.70hypothetical protein SDJN03_27437, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6573554.19.0e-4593.55hypothetical protein SDJN03_27441, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_019265114.11.4e-1648.39PREDICTED: uncharacterized protein LOC109242719 [Nicotiana attenuata][more]
XP_021632296.13.0e-1654.02uncharacterized protein LOC110629573 [Manihot esculenta] >OAY33565.1 hypothetica... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LW717.5e-2970.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G186620 PE=4 SV=1[more]
A0A2C9URU51.5e-1654.02Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G107300 PE=4 SV=... [more]
A0A438FE463.3e-1647.96Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_111219 PE=4 SV=1[more]
A0A6P3ZGK35.6e-1648.31uncharacterized protein LOC107414952 OS=Ziziphus jujuba OX=326968 GN=LOC10741495... [more]
A0A438JGC25.6e-1652.17Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_014623 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G12064.11.8e-1143.06unknown protein; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 ... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 2..48
e-value: 6.95338E-18
score: 72.8861

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg28104-RACarg28104-RAmRNA