Carg28104 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGATAACAAGAGTACTTCAGGCTATGTGTTTATGATGAGTGGAGAAGTAGTAGCTTGGTCTTCTCGTAAGCAGCCTATAGTCACCTTATCAACCATAAAAGTTGAGTTTGTTGCTGCTAATGCCTGTGCATGTCAAGCGGATGAGGAGAATAGTTAAAGAGATTGATCACTCTTAGCGGATGAGGAGAATAGTTAAAGAGATTGATCACTCTTAAATAGAAGGAACAAAGCTAATGTGTGATAATACTTTAACTATTAAGCTATCCAAAAATCCAATTTTACATGGACGTTCTAAACATATAAGAGTAAGATTTCACTTTTTTTTTTTAGAGATTTGAAGTAATCGTCAATTTATTATTTTGTGGTATTTGCCAATCTCAATGCCTCTAAAATGAATTGTTAAAAGAATTTATGTTAATTTCTATTGGTAGAGGTTAAGTTTAGTATTCATTAATATTATCTCTAAACTCTGGGTTGGATGGGCTTATGTCAAAATTTAACCCTCGTTCATTTAAAAAATTGTTTAAAAAATTATAATTAATTAATTTATTAAAACTTATAACTTTAATTAGTATGAATGCGCAAACTAACATTTTTATTTATAAAATTAAATCTAAATGGATTTGAATTGATATAAAATTTTGGAGTTAGTGTGTTAGAAAGAATCGAGGAAACCAAGAAATGCATGGGTGACCACATTAAATAATACTCATAAATACAGACCACAACTATCAACTACCTTCCATCTCTATTAATTTCCTCCCAGTTCTTCCTCATCCAAACCAGTTTCACACATGGACATATCATTACGCTTTCACTCAGCAATCACCGCAGCGGTGATTCTTATGACGGCCATCTGCCTGACTTCCCCTTGCCCGACCGACGCCAAGCTGTGCGGGGACTGCATCAGGGACAGGATGGCGCTGCACTGCCCAGCCTGCGCACCGCCTCTTCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGGTTCAAGGTCGAGGTGCGTTAAGCAGTGCGATGGCGGCGGTGCATGGGCGAGGCTGTGGAGTTGCAAGCGTTGCATGTGGAGTTGCAAGTGCAGTTGTACCTCTTCTTCTTCTTAG ATGGAAGATAACAAGAGTACTTCAGGCTATGTGTTTATGATGAGTGGAGAAGTAGTAGCTTGGTCTTCTCGTAAGCAGCCTATAGTCACCTTATCAACCATAAAAGTTGAGTTTGTTGCTGCTAATGCCTGTGCATGTCAAGCGGATGAGGAGAATACAATCACCGCAGCGGTGATTCTTATGACGGCCATCTGCCTGACTTCCCCTTGCCCGACCGACGCCAAGCTGTGCGGGGACTGCATCAGGGACAGGATGGCGCTGCACTGCCCAGCCTGCGCACCGCCTCTTCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGGTTCAAGGTCGAGGTGCGTTAAGCAGTGCGATGGCGGCGGTGCATGGGCGAGGCTGTGGAGTTGCAAGCGTTGCATGTGGAGTTGCAAGTGCAGTTGTACCTCTTCTTCTTCTTAG ATGGAAGATAACAAGAGTACTTCAGGCTATGTGTTTATGATGAGTGGAGAAGTAGTAGCTTGGTCTTCTCGTAAGCAGCCTATAGTCACCTTATCAACCATAAAAGTTGAGTTTGTTGCTGCTAATGCCTGTGCATGTCAAGCGGATGAGGAGAATACAATCACCGCAGCGGTGATTCTTATGACGGCCATCTGCCTGACTTCCCCTTGCCCGACCGACGCCAAGCTGTGCGGGGACTGCATCAGGGACAGGATGGCGCTGCACTGCCCAGCCTGCGCACCGCCTCTTCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGGTTCAAGGTCGAGGTGCGTTAAGCAGTGCGATGGCGGCGGTGCATGGGCGAGGCTGTGGAGTTGCAAGCGTTGCATGTGGAGTTGCAAGTGCAGTTGTACCTCTTCTTCTTCTTAG MEDNKSTSGYVFMMSGEVVAWSSRKQPIVTLSTIKVEFVAANACACQADEENTITAAVILMTAICLTSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS Homology
BLAST of Carg28104 vs. NCBI nr
Match: KAG7012656.1 (hypothetical protein SDJN02_25409, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 302.0 bits (772), Expect = 2.8e-78 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
BLAST of Carg28104 vs. NCBI nr
Match: KAG6573550.1 (hypothetical protein SDJN03_27437, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 195.3 bits (495), Expect = 3.7e-46 Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 0
BLAST of Carg28104 vs. NCBI nr
Match: KAG6573554.1 (hypothetical protein SDJN03_27441, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 190.7 bits (483), Expect = 9.0e-45 Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 0
BLAST of Carg28104 vs. NCBI nr
Match: XP_019265114.1 (PREDICTED: uncharacterized protein LOC109242719 [Nicotiana attenuata]) HSP 1 Score: 97.1 bits (240), Expect = 1.4e-16 Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 0
BLAST of Carg28104 vs. NCBI nr
Match: XP_021632296.1 (uncharacterized protein LOC110629573 [Manihot esculenta] >OAY33565.1 hypothetical protein MANES_13G107300v8 [Manihot esculenta]) HSP 1 Score: 95.9 bits (237), Expect = 3.0e-16 Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 0
BLAST of Carg28104 vs. ExPASy TrEMBL
Match: A0A0A0LW71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G186620 PE=4 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 7.5e-29 Identity = 63/90 (70.00%), Postives = 71/90 (78.89%), Query Frame = 0
BLAST of Carg28104 vs. ExPASy TrEMBL
Match: A0A2C9URU5 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G107300 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16 Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 0
BLAST of Carg28104 vs. ExPASy TrEMBL
Match: A0A438FE46 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_111219 PE=4 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 3.3e-16 Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 0
BLAST of Carg28104 vs. ExPASy TrEMBL
Match: A0A6P3ZGK3 (uncharacterized protein LOC107414952 OS=Ziziphus jujuba OX=326968 GN=LOC107414952 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 5.6e-16 Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 0
BLAST of Carg28104 vs. ExPASy TrEMBL
Match: A0A438JGC2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_014623 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 5.6e-16 Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = 0
BLAST of Carg28104 vs. TAIR 10
Match: AT1G12064.1 (unknown protein; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 66.6 bits (161), Expect = 1.8e-11 Identity = 31/72 (43.06%), Postives = 40/72 (55.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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