Carg28078 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28078
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DNA-directed RNA polymerase
Location	Carg_Chr06: 3616375 .. 3617155 (-)
RNA-Seq Expression	Carg28078
Synteny	Carg28078

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTCTGAAACTCAGAAGCCATGGTCGTGAAGCCGTCGGATGGCGATTCAAAGTAAAGCCAACCGCATTCTCTCAAAATCTTTATTTCTTCGTTTTCCTTTGACTGCATCGGTGCTGAATTTCTGTTTTCCGCCATTGTTAGTTACTGATCAATTACTTTCTAGCACGACAAAATCTGTAGGAACGGGAAGCAAGTCGACGATCCTAATGCAATCGATTTGGACATTGACAAGAAATTCCTTGGCCTGCCTATCAAGTCAGCCGTCGATAAGTTTCAACTTATTCCTGCATTTTTTAAGGTGGAAATCATCACACTGCTTTTGTTTGTTATTGTTATGATTATATGTTTAGCCATGAAATTATCTCTATTACGCTGCTTTTGTCTAAATTTCAGCCTATGATTATTAACGCACATAGTTTAATCATCTGGTTTCAAGTAAGAGGTCTGGTTCGACAACGCTTGCGATTCCTTAACTACTTCGTGAATACAGAAATTAAAAAGATAGTCAAGGCCAATGATCGAATTGAATCCAGCAATGATCGTACTTATCTTAGGGTACACGTTTTTCATTCGTCTCTAGCATGTTCATTGCTGCATCGATGCTGTCGGCTTCTTGTTTTACACTCGTTTTTCATTCATGTCTCTAGCATGTTCATTTCCTACTTGTTTCACACTTGTCGGCTTCTTCCTTTAGTACTTTGCTACAGGTATGAGAATGCTGAGGAGAGCTGGAAAAATTGGCGAGTTTATCAATGTGTTTGTGAATGAGAAGCAG

mRNA sequence

ATGGAGTCTCTGAAACTCAGAAGCCATGGTCGTGAAGCCGTCGGATGGCGATTCAAACACGACAAAATCTGTAGGAACGGGAAGCAAGTCGACGATCCTAATGCAATCGATTTGGACATTGACAAGAAATTCCTTGGCCTGCCTATCAAGTCAGCCGTCGATAAGTTTCAACTTATTCCTGCATTTTTTAAGCCTATGATTATTAACGCACATAGTTTAATCATCTGGTTTCAAGTAAGAGGTCTGGTTCGACAACGCTTGCGATTCCTTAACTACTTCGTGAATACAGAAATTAAAAAGATAGTCAAGGCCAATGATCGAATTGAATCCAGCAATGATCGTACTTATCTTAGGTACTTTGCTACAGGTATGAGAATGCTGAGGAGAGCTGGAAAAATTGGCGAGTTTATCAATGTGTTTGTGAATGAGAAGCAG

Coding sequence (CDS)

ATGGAGTCTCTGAAACTCAGAAGCCATGGTCGTGAAGCCGTCGGATGGCGATTCAAACACGACAAAATCTGTAGGAACGGGAAGCAAGTCGACGATCCTAATGCAATCGATTTGGACATTGACAAGAAATTCCTTGGCCTGCCTATCAAGTCAGCCGTCGATAAGTTTCAACTTATTCCTGCATTTTTTAAGCCTATGATTATTAACGCACATAGTTTAATCATCTGGTTTCAAGTAAGAGGTCTGGTTCGACAACGCTTGCGATTCCTTAACTACTTCGTGAATACAGAAATTAAAAAGATAGTCAAGGCCAATGATCGAATTGAATCCAGCAATGATCGTACTTATCTTAGGTACTTTGCTACAGGTATGAGAATGCTGAGGAGAGCTGGAAAAATTGGCGAGTTTATCAATGTGTTTGTGAATGAGAAGCAG

Protein sequence

MESLKLRSHGREAVGWRFKHDKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ

Homology

[Close]

BLAST of Carg28078 vs. NCBI nr
Match: KAG7028311.1 (DNA-directed RNA polymerase III subunit 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.3 bits (752), Expect = 5.8e-76
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MESLKLRSHGREAVGWRFKHDKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIP 60
           MESLKLRSHGREAVGWRFKHDKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIP
Sbjct: 1   MESLKLRSHGREAVGWRFKHDKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIP 60

Query: 61  AFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYF 120
           AFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYF
Sbjct: 61  AFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYF 120

Query: 121 ATGMRMLRRAGKIGEFINVFVNEKQ 146
           ATGMRMLRRAGKIGEFINVFVNEKQ
Sbjct: 121 ATGMRMLRRAGKIGEFINVFVNEKQ 145

[Close]

BLAST of Carg28078 vs. NCBI nr
Match: KAG6596781.1 (DNA-directed RNA polymerase III subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241.5 bits (615), Expect = 4.5e-60
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 25  RNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVR 84
           +NGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVR
Sbjct: 11  KNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVR 70

Query: 85  QRLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEK 144
           QRLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEK
Sbjct: 71  QRLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEK 130

Query: 145 Q 146
           Q
Sbjct: 131 Q 131

[Close]

BLAST of Carg28078 vs. NCBI nr
Match: KAG6596780.1 (Subtilisin-like protease 5.3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192.2 bits (487), Expect = 3.1e-45
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 26  NGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQ 85
           NGKQVDDPNAIDLD DKKFLGLPIKSAVDKFQLIPAFFKP+IINAHSLIIWFQVRGLVRQ
Sbjct: 739 NGKQVDDPNAIDLDTDKKFLGLPIKSAVDKFQLIPAFFKPIIINAHSLIIWFQVRGLVRQ 798

Query: 86  RLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYFAT 123
           RLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYFAT
Sbjct: 799 RLRFLNYFVNTEIKKIVKANDRIESSNDRTYLRYFAT 835

[Close]

BLAST of Carg28078 vs. NCBI nr
Match: XP_023541760.1 (DNA-directed RNA polymerase III subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.0 bits (297), Expect = 3.4e-23
Identity = 67/100 (67.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 21  DKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVR 80
           D   +NGKQVDDPNAI  DIDK+FLGLPIKSAVDKFQL+P F K              VR
Sbjct: 7   DDDSKNGKQVDDPNAIGSDIDKQFLGLPIKSAVDKFQLLPEFLK--------------VR 66

Query: 81  GLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY 120
           GLVRQ L   NYFVNTEIKKIVKANDRIESS D + YLR+
Sbjct: 67  GLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYLRF 92

[Close]

BLAST of Carg28078 vs. NCBI nr
Match: XP_023541760.1 (DNA-directed RNA polymerase III subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-04
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 101 IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ 146
           +V  N RI   + R   +YFATGMRMLRRAGKIGEF++VFVNEKQ
Sbjct: 557 LVIFNGRILGKHRRP--QYFATGMRMLRRAGKIGEFVSVFVNEKQ 599

HSP 2 Score: 119.0 bits (297), Expect = 3.4e-23
Identity = 67/100 (67.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 21  DKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVR 80
           D   +NGKQVDDPNAI  DIDK+FLGLPIKSAVDKFQL+P F K              VR
Sbjct: 7   DDDSKNGKQVDDPNAIGSDIDKQFLGLPIKSAVDKFQLLPEFLK--------------VR 66

Query: 81  GLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY 120
           GLVRQ L   NYFVNTEIKKIVKANDRIESS D + YLR+
Sbjct: 67  GLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYLRF 92

[Close]

BLAST of Carg28078 vs. ExPASy Swiss-Prot
Match: F4KD38 (DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPC2 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.9e-11
Identity = 41/81 (50.62%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 40  IDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIK 99
           IDK+ L  PIKS  DKFQL+P F K              VRGLV+Q L   NYF+N  I 
Sbjct: 17  IDKEKLSAPIKSTADKFQLVPEFLK--------------VRGLVKQHLDSFNYFINVGIH 76

Query: 100 KIVKANDRIESSNDRT-YLRY 120
           KIVKAN RI S+ D + YLR+
Sbjct: 77  KIVKANSRITSTVDPSIYLRF 83

HSP 2 Score: 46.6 bits (109), Expect = 2.8e-04
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 0


Query: 118 RYFATGMRMLRRAGKIGEFINVFVNEKQ 146
           +YFA  +R LRRAGKIGEF++VF NEKQ
Sbjct: 564 QYFANSLRRLRRAGKIGEFVSVFTNEKQ 591

[Close]

BLAST of Carg28078 vs. ExPASy Swiss-Prot
Match: P25167 (DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster OX=7227 GN=RpIII128 PE=2 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 5.4e-08
Identity = 41/120 (34.17%), Postives = 56/120 (46.67%), Query Frame = 0


Query: 1   MESLKLRSHGREAVGWRFKHDKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIP 60
           M  LK+  H  EA  W               DP       D K   +PIK   +K++L+P
Sbjct: 1   MVELKMGDHNVEATTW---------------DPG------DSKDWSVPIKPLTEKWKLVP 60

Query: 61  AFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY 120
           AF               QV+GLV+Q +   N+F+N +IKKIVKAN+ + S  D   YL+Y
Sbjct: 61  AF--------------LQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGADPLFYLKY 85

[Close]

BLAST of Carg28078 vs. ExPASy Swiss-Prot
Match: Q9NW08 (DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens OX=9606 GN=POLR3B PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 3.5e-07
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 45  LGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKA 104
           L  PI +  +K++L+PAF K              V+GLV+Q +   NYF+N EIKKI+KA
Sbjct: 16  LAAPIPTVEEKWRLLPAFLK--------------VKGLVKQHIDSFNYFINVEIKKIMKA 75

Query: 105 NDRIESSND-RTYLRY 120
           N+++ S  D   YL+Y
Sbjct: 76  NEKVTSDADPMWYLKY 77

[Close]

BLAST of Carg28078 vs. ExPASy Swiss-Prot
Match: Q54IZ9 (DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium discoideum OX=44689 GN=polr3b PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.0e-07
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 49  IKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKANDRI 108
           IK   +K++L+PAF K               RGLV+Q +   N+F+N E+KKIVKAN+R+
Sbjct: 33  IKPVEEKWKLVPAFMK--------------CRGLVKQHIDSFNFFINVEMKKIVKANERL 90

Query: 109 ESSNDRTYLRYF 121
            + ND +Y   F
Sbjct: 93  TAENDPSYFVRF 90

[Close]

BLAST of Carg28078 vs. ExPASy Swiss-Prot
Match: P59470 (DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus OX=10090 GN=Polr3b PE=1 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 6.0e-07
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 45  LGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIKKIVKA 104
           L  PI +  +K++L+PAF K              V+GLV+Q +   NYF+N EIKKI+KA
Sbjct: 16  LTAPIPTVEEKWRLLPAFLK--------------VKGLVKQHIDSFNYFINVEIKKIMKA 75

Query: 105 NDRIESSND-RTYLRY 120
           N+++ S  D   YL+Y
Sbjct: 76  NEKVTSDADPMWYLKY 77

[Close]

BLAST of Carg28078 vs. ExPASy TrEMBL
Match: A0A6J1G1X8 (DNA-directed RNA polymerase subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111449942 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 67/100 (67.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 21  DKICRNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVR 80
           D   +NGKQVDDPNAI  DIDK+FLGLPIKSAVDKFQL+P F K              VR
Sbjct: 7   DDDSKNGKQVDDPNAIGSDIDKQFLGLPIKSAVDKFQLLPEFLK--------------VR 66

Query: 81  GLVRQRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY 120
           GLVRQ L   NYFVNTEIKKIVKANDRIESS D + YLR+
Sbjct: 67  GLVRQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYLRF 92

[Close]

BLAST of Carg28078 vs. ExPASy TrEMBL
Match: A0A6J1G1X8 (DNA-directed RNA polymerase subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111449942 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.6e-05
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 101 IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ 146
           +V  N RI   + R   +YFATGMRMLRRAGKIGEF++VFVNEKQ
Sbjct: 557 LVIFNGRILGKHRRP--QYFATGMRMLRRAGKIGEFVSVFVNEKQ 599

HSP 2 Score: 117.5 bits (293), Expect = 4.7e-23
Identity = 65/96 (67.71%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 25  RNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVR 84
           +NGKQVDDPNAI  DIDK+FLGLPIKSAVDKFQL+P F K              VRGLVR
Sbjct: 11  KNGKQVDDPNAIGSDIDKQFLGLPIKSAVDKFQLLPEFLK--------------VRGLVR 70

Query: 85  QRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY 120
           Q L   NYFVNTEIKKIVKANDRI+SS D + YLR+
Sbjct: 71  QHLDSFNYFVNTEIKKIVKANDRIQSSTDPSIYLRF 92

[Close]

BLAST of Carg28078 vs. ExPASy TrEMBL
Match: A0A6J1HQP0 (DNA-directed RNA polymerase subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111466504 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.6e-05
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 101 IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ 146
           +V  N RI   + R   +YFATGMRMLRRAGKIGEF++VFVNEKQ
Sbjct: 557 LVIFNGRILGKHRRP--QYFATGMRMLRRAGKIGEFVSVFVNEKQ 599

HSP 2 Score: 110.9 bits (276), Expect = 4.4e-21
Identity = 62/94 (65.96%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 27  GKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQR 86
           GKQVD P+ ID DIDK+FLGLPIKSAVDKFQL+P F K              VRGLVRQ 
Sbjct: 13  GKQVDGPHPIDSDIDKQFLGLPIKSAVDKFQLLPEFLK--------------VRGLVRQH 72

Query: 87  LRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY 120
           L   NYFVNTEIKKIVKANDRIESS D + YL++
Sbjct: 73  LDSFNYFVNTEIKKIVKANDRIESSTDPSIYLKF 92

[Close]

BLAST of Carg28078 vs. ExPASy TrEMBL
Match: A0A5A7UBS2 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold481G00090 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-20
Identity = 61/96 (63.54%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 25  RNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVR 84
           +N KQ DD N ID DIDK+F+GLPIKSAVDKFQL+P F K              VRGLV+
Sbjct: 11  KNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLK--------------VRGLVK 70

Query: 85  QRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY 120
           Q L   NYFVNTEIKKIVKANDRIESS D + YLR+
Sbjct: 71  QHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYLRF 92

[Close]

BLAST of Carg28078 vs. ExPASy TrEMBL
Match: A0A5A7UBS2 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold481G00090 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.6e-05
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 101 IVKANDRIESSNDRTYLRYFATGMRMLRRAGKIGEFINVFVNEKQ 146
           +V  N RI   + R   +YFATGMRMLRRAGKIGEF++VFVNEKQ
Sbjct: 557 LVIFNGRILGKHRRP--QYFATGMRMLRRAGKIGEFVSVFVNEKQ 599

HSP 2 Score: 108.6 bits (270), Expect = 2.2e-20
Identity = 61/96 (63.54%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 25  RNGKQVDDPNAIDLDIDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVR 84
           +N KQ DD N ID DIDK+F+GLPIKSAVDKFQL+P F K              VRGLV+
Sbjct: 11  KNEKQGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLK--------------VRGLVK 70

Query: 85  QRLRFLNYFVNTEIKKIVKANDRIESSNDRT-YLRY 120
           Q L   NYFVNTEIKKIVKANDRIESS D + YLR+
Sbjct: 71  QHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYLRF 92

[Close]

BLAST of Carg28078 vs. TAIR 10
Match: AT5G45140.1 (nuclear RNA polymerase C2 )

HSP 1 Score: 68.2 bits (165), Expect = 6.3e-12
Identity = 41/81 (50.62%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 40  IDKKFLGLPIKSAVDKFQLIPAFFKPMIINAHSLIIWFQVRGLVRQRLRFLNYFVNTEIK 99
           IDK+ L  PIKS  DKFQL+P F K              VRGLV+Q L   NYF+N  I 
Sbjct: 17  IDKEKLSAPIKSTADKFQLVPEFLK--------------VRGLVKQHLDSFNYFINVGIH 76

Query: 100 KIVKANDRIESSNDRT-YLRY 120
           KIVKAN RI S+ D + YLR+
Sbjct: 77  KIVKANSRITSTVDPSIYLRF 83

HSP 2 Score: 46.6 bits (109), Expect = 2.0e-05
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 0


Query: 118 RYFATGMRMLRRAGKIGEFINVFVNEKQ 146
           +YFA  +R LRRAGKIGEF++VF NEKQ
Sbjct: 564 QYFANSLRRLRRAGKIGEFVSVFTNEKQ 591

The following BLAST results are available for this feature:

BLAST of Carg28078 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028311.1	5.8e-76	100.00	DNA-directed RNA polymerase III subunit 2, partial [Cucurbita argyrosperma subsp...	[more]
KAG6596781.1	4.5e-60	99.17	DNA-directed RNA polymerase III subunit 2, partial [Cucurbita argyrosperma subsp...	[more]
KAG6596780.1	3.1e-45	97.94	Subtilisin-like protease 5.3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023541760.1	3.4e-23	67.00	DNA-directed RNA polymerase III subunit 2 [Cucurbita pepo subsp. pepo]	[more]
XP_023541760.1	1.6e-04	66.67	DNA-directed RNA polymerase III subunit 2 [Cucurbita pepo subsp. pepo]	[more]

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BLAST of Carg28078 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KD38	8.9e-11	50.62	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRP...	[more]
P25167	5.4e-08	34.17	DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster OX=7227 ...	[more]
Q9NW08	3.5e-07	40.79	DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens OX=9606 GN=POLR3B P...	[more]
Q54IZ9	6.0e-07	40.28	DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium discoideum OX=4468...	[more]
P59470	6.0e-07	40.79	DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus OX=10090 GN=Polr3b ...	[more]

BLAST of Carg28078 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1X8	1.6e-23	67.00	DNA-directed RNA polymerase subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1G1X8	7.6e-05	66.67	DNA-directed RNA polymerase subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1HQP0	7.6e-05	66.67	DNA-directed RNA polymerase subunit beta OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]
A0A5A7UBS2	2.2e-20	63.54	DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UBS2	7.6e-05	66.67	DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

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BLAST of Carg28078 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45140.1	6.3e-12	50.62	nuclear RNA polymerase C2	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28078-RA	Carg28078-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0097159	organic cyclic compound binding