Carg28065 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg28065
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 4833808 .. 4834433 (-)
RNA-Seq ExpressionCarg28065
SyntenyCarg28065
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGTTCTAAGAATAGAGAGGCAGCCATTAGAATCAGTTAAAGAATTCGCCATTTTTGCAAGGACTAACGATTTGAGCACGACAGTACTGCAATGCACGTCTTGCGGCAGTCGCGCACCCAGAGAAGGAAAACCAATCTTCGGTTCTTCTTCCTCACTGTCCATGGAAGGTTTGAACAATCCTTTTCTATTGTTCTGTCTCCAATATCTACTTATCATCCCTTCCGATTTATTTTCTGTTTTGATCTTTCATAAGAGAAGGAGAAATAAAGGAAAGACAGAGCTCTGGTGGTAACCTACCCGCTCTGTCAATCCCCAAACATGGCTGGTCCTTCGCGTTTCTAGGATCTCATCACTACCCACTCAACTCTCCCTCCCTTTTCCTAATCACATTCAGCTTCAATATTCTACATTCCACTTTCCCTTTTCCTCTTTTTCTTTCTCTTTCTATCTTCCTTCTCTTCTATTTTCTCGTCAACCATCGCAATATTAATCTCTCTTTTTTCTCTTTTTCTGGGTTCTTTTCATCAGAGGCAATGATTTCTGATCTGAGGTTTTAATCTTCTTTTGTTATCTCTAGAATCGGTAGGGTCTTTGTTTGTTTCTTGCGGATTGAGTGTGTGA

mRNA sequence

ATGAATGTTCTAAGAATAGAGAGGCAGCCATTAGAATCAGTTAAAGAATTCGCCATTTTTGCAAGGACTAACGATTTGAGCACGACAGTACTGCAATGCACGTCTTGCGGCAGTCGCGCACCCAGAGAAGGAAAACCAATCTTCGGTTCTTCTTCCTCACTGTCCATGGAAGAATCGGTAGGGTCTTTGTTTGTTTCTTGCGGATTGAGTGTGTGA

Coding sequence (CDS)

ATGAATGTTCTAAGAATAGAGAGGCAGCCATTAGAATCAGTTAAAGAATTCGCCATTTTTGCAAGGACTAACGATTTGAGCACGACAGTACTGCAATGCACGTCTTGCGGCAGTCGCGCACCCAGAGAAGGAAAACCAATCTTCGGTTCTTCTTCCTCACTGTCCATGGAAGAATCGGTAGGGTCTTTGTTTGTTTCTTGCGGATTGAGTGTGTGA

Protein sequence

MNVLRIERQPLESVKEFAIFARTNDLSTTVLQCTSCGSRAPREGKPIFGSSSSLSMEESVGSLFVSCGLSV
Homology
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BLAST of Carg28065 vs. NCBI nr
Match: KAG7037159.1 (hypothetical protein SDJN02_00781, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 3.4e-29
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MNVLRIERQPLESVKEFAIFARTNDLSTTVLQCTSCGSRAPREGKPIFGSSSSLSMEESV 60
          MNVLRIERQPLESVKEFAIFARTNDLSTTVLQCTSCGSRAPREGKPIFGSSSSLSMEESV
Sbjct: 1  MNVLRIERQPLESVKEFAIFARTNDLSTTVLQCTSCGSRAPREGKPIFGSSSSLSMEESV 60

Query: 61 GSLFVSCGLSV 72
          GSLFVSCGLSV
Sbjct: 61 GSLFVSCGLSV 71

The following BLAST results are available for this feature:
BLAST of Carg28065 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037159.13.4e-29100.00hypothetical protein SDJN02_00781, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg28065 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg28065 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg28065 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg28065-RACarg28065-RAmRNA