Carg28057 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28057
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	non-specific lipid-transfer protein-like protein At2g13820
Location	Carg_Chr02: 9939572 .. 9940741 (+)
RNA-Seq Expression	Carg28057
Synteny	Carg28057

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCATTGAGTCAGCCCTTTTCCTACTCCTTGTGGCTTTCGGTATGAGCCATGAGAGCGTGGCCCAGTCAGCTGGTTGCACCACGGCGTTGATAAGCTTATCTCCATGCCTAACTTATATCACAGGCAGCGGAGGCTCTTCCACTTCTACTGCTCCATCTTCTTCTTGCTGCTCGCGCCTTGCCACCGTGGTTCAATCGCAGCCACAGTGCCTTTGCTCGGCGCTCAATGGTGGCGCTGCGGTTTCTCTCGGTGTCACTATCAACCGGACTCGAGCTCTTGGGCTTCCTGTTGCCTGTAGTGTTCAAACGCCGCCACCCAGCCGCTGTAATGGTAACCAAATTCTATTCTTTTCAACTTGCACCTGGCGCTTCTAAATATAGTCAATCGTCCCTCTTGTTTACATCATTTTTTCAATTTCGTCTCTCTTGTTTACATCATTCTTCAATTTCGTCTCTAATTTTCCAAAATTCTCAACTTTACATTCTAGCATATTTTAAATTCTCAATTAGGGTCCGAATAAAAAATATTAATTAGCAACACAACAATTACGCATGTTATTTTAATAAAATAAATAAAAAAAAAAAGATTTAAGTTTTAGTGAAAAAAATTAAATACGTAATTGTTGAGTTAAAAAAGTATATGCAATTTTGTTTTTGGTGAGCAGAATGGAGTTGAGGATTTAAAAAGATTGAAAATGACCTTACATGATTAGAATATTTTATATTTTCCGGATGGCAATGATGAATTCCACAACAGTAGAGACAAATTTTTAGTTAAAATGCCGAAGACAGACTCAAAGAGTGGTGGAGGACATCATCATATAAACACTAACTTGGATGTGAAAACACACAGATGCTAATGGAGCTGCTGCTGCTCCAGCAATATCTCCGATAAGTTCGCCGGGGAATTCACCTTCAGATGACGAAGAACTTGGTGAAGCTCCAACAACACGGGAACTACTTTTCCTTCGGAAGTAGACTCCAAATATGTTCCAAACAACAGGAGGAATCCCGAGAGCGGCGGCCGGAGCTTAATCAAGACGCCCTTTTATGATCTCACTGTTGTCGGCCTACTTCTGACAGCTCTGTTATAAGCTGAATGAAACGACCGACCCCAAGCAAAGATTATATATTCACATATGTATCGAACCACTAGAAAAAAGAAAA

mRNA sequence

ATGGGCATTGAGTCAGCCCTTTTCCTACTCCTTGTGGCTTTCGGTATGAGCCATGAGAGCGTGGCCCAGTCAGCTGGTTGCACCACGGCGTTGATAAGCTTATCTCCATGCCTAACTTATATCACAGGCAGCGGAGGCTCTTCCACTTCTACTGCTCCATCTTCTTCTTGCTGCTCGCGCCTTGCCACCGTGGTTCAATCGCAGCCACAGTGCCTTTGCTCGGCGCTCAATGGTGGCGCTGCGGTTTCTCTCGGTGTCACTATCAACCGGACTCGAGCTCTTGGGCTTCCTGTTGCCTGTAGTGTTCAAACGCCGCCACCCAGCCGCTGTAATGATGCTAATGGAGCTGCTGCTGCTCCAGCAATATCTCCGATAAGTTCGCCGGGGAATTCACCTTCAGATGACGAAGAACTTGGTGAAGCTCCAACAACACGGGAACTACTTTTCCTTCGGAAGTAGACTCCAAATATGTTCCAAACAACAGGAGGAATCCCGAGAGCGGCGGCCGGAGCTTAATCAAGACGCCCTTTTATGATCTCACTGTTGTCGGCCTACTTCTGACAGCTCTGTTATAAGCTGAATGAAACGACCGACCCCAAGCAAAGATTATATATTCACATATGTATCGAACCACTAGAAAAAAGAAAA

Coding sequence (CDS)

ATGGGCATTGAGTCAGCCCTTTTCCTACTCCTTGTGGCTTTCGGTATGAGCCATGAGAGCGTGGCCCAGTCAGCTGGTTGCACCACGGCGTTGATAAGCTTATCTCCATGCCTAACTTATATCACAGGCAGCGGAGGCTCTTCCACTTCTACTGCTCCATCTTCTTCTTGCTGCTCGCGCCTTGCCACCGTGGTTCAATCGCAGCCACAGTGCCTTTGCTCGGCGCTCAATGGTGGCGCTGCGGTTTCTCTCGGTGTCACTATCAACCGGACTCGAGCTCTTGGGCTTCCTGTTGCCTGTAGTGTTCAAACGCCGCCACCCAGCCGCTGTAATGATGCTAATGGAGCTGCTGCTGCTCCAGCAATATCTCCGATAAGTTCGCCGGGGAATTCACCTTCAGATGACGAAGAACTTGGTGAAGCTCCAACAACACGGGAACTACTTTTCCTTCGGAAGTAG

Protein sequence

MGIESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANGAAAAPAISPISSPGNSPSDDEELGEAPTTRELLFLRK

Homology

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BLAST of Carg28057 vs. NCBI nr
Match: KAG6606419.1 (Non-specific lipid transfer protein GPI-anchored 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036357.1 Non-specific lipid transfer protein GPI-anchored 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 286.6 bits (732), Expect = 1.3e-73
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MGIESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSR 60
           MGIESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSR
Sbjct: 1   MGIESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSR 60

Query: 61  LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANGAAAAP 120
           LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANGAAAAP
Sbjct: 61  LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANGAAAAP 120

Query: 121 AISPISSPGNSPSDDEELGEAPTTRELLFLRK 153
           AISPISSPGNSPSDDEELGEAPTTRELLFLRK
Sbjct: 121 AISPISSPGNSPSDDEELGEAPTTRELLFLRK 152

[Close]

BLAST of Carg28057 vs. NCBI nr
Match: XP_022931068.1 (non-specific lipid-transfer protein-like protein At2g13820 [Cucurbita moschata])

HSP 1 Score: 275.8 bits (704), Expect = 2.3e-70
Identity = 146/149 (97.99%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MGIESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSR 60
           MGIESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSR
Sbjct: 19  MGIESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSR 78

Query: 61  LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANGAAAAP 120
           LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLP ACSVQTPPPSRCNDANGAAAAP
Sbjct: 79  LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPAACSVQTPPPSRCNDANGAAAAP 138

Query: 121 AISPISSPGNSPSDDEELGEAPTTRELLF 150
           AISPISSPGNSPSDDEELGEAPTTRE  F
Sbjct: 139 AISPISSPGNSPSDDEELGEAPTTRETTF 167

[Close]

BLAST of Carg28057 vs. NCBI nr
Match: XP_023534720.1 (non-specific lipid-transfer protein-like protein At2g13820 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.9 bits (694), Expect = 3.3e-69
Identity = 144/149 (96.64%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MGIESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSR 60
           MGIESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSR
Sbjct: 19  MGIESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSR 78

Query: 61  LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANGAAAAP 120
           LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLP ACSVQTPPPSRC+DANGAAAAP
Sbjct: 79  LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPAACSVQTPPPSRCDDANGAAAAP 138

Query: 121 AISPISSPGNSPSDDEELGEAPTTRELLF 150
           AISPISSPG+SPSDDEELGEAPTTRE  F
Sbjct: 139 AISPISSPGSSPSDDEELGEAPTTRETTF 167

[Close]

BLAST of Carg28057 vs. NCBI nr
Match: XP_022996122.1 (non-specific lipid-transfer protein-like protein At2g13820 [Cucurbita maxima])

HSP 1 Score: 265.0 bits (676), Expect = 4.0e-67
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MGIESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSR 60
           MGIESALFLLLVAFGMSHESVAQS GCTTALISLSPCLTY TGSGGSSTSTAPSSSCCSR
Sbjct: 1   MGIESALFLLLVAFGMSHESVAQSVGCTTALISLSPCLTYTTGSGGSSTSTAPSSSCCSR 60

Query: 61  LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANGAAAAP 120
           LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLP AC+VQTPPPSRCNDANGAAAAP
Sbjct: 61  LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPAACNVQTPPPSRCNDANGAAAAP 120

Query: 121 AISPISSPGNSPSDDEELGEAPTTRE 147
            ISPISSPG+SPSDDEELGEAPTTRE
Sbjct: 121 PISPISSPGSSPSDDEELGEAPTTRE 146

[Close]

BLAST of Carg28057 vs. NCBI nr
Match: XP_038888862.1 (non-specific lipid transfer protein GPI-anchored 19-like [Benincasa hispida])

HSP 1 Score: 179.1 bits (453), Expect = 2.9e-41
Identity = 99/145 (68.28%), Postives = 116/145 (80.00%), Query Frame = 0


Query: 1   MGI-ESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCS 60
           MGI ES + +++V   MSH S+ QS+GCTTALISLSPCLTYIT +G    +T+PSSSCCS
Sbjct: 1   MGINESIILVVVVGLSMSHGSLGQSSGCTTALISLSPCLTYITATG----TTSPSSSCCS 60

Query: 61  RLATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANGAAAA 120
           RLATVVQSQP+CLCSALNGGAA SLGVTIN+TRAL LP AC +QTPPP+RCND       
Sbjct: 61  RLATVVQSQPRCLCSALNGGAAASLGVTINQTRALALPAACRLQTPPPTRCNDNGNGGEG 120

Query: 121 PAISPISSPGNSPSDDEELGEAPTT 145
           P ISPISS  +  +DDEE+GEAP+T
Sbjct: 121 PIISPISS-SDKLADDEEVGEAPST 140

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BLAST of Carg28057 vs. ExPASy Swiss-Prot
Match: Q9LJ86 (Non-specific lipid transfer protein GPI-anchored 5 OS=Arabidopsis thaliana OX=3702 GN=LTPG5 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.7e-25
Identity = 63/125 (50.40%), Postives = 83/125 (66.40%), Query Frame = 0


Query: 7   LFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQ 66
           +FL +    MS   V+  + CT ALIS+SPCL YITG+     ST+P+  CC++L+ VVQ
Sbjct: 8   VFLTVFMAVMSSTMVSAQSSCTNALISMSPCLNYITGN-----STSPNQQCCNQLSRVVQ 67

Query: 67  SQPQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANGAAAAPAISPIS 126
           S P CLC  LNGG +  LG+ +N+T+ALGLP AC+VQTPP SRCN   G   + + SP  
Sbjct: 68  SSPDCLCQVLNGGGS-QLGINVNQTQALGLPRACNVQTPPVSRCNTGGGGGGSTSDSPAE 126

Query: 127 SPGNS 132
           SP +S
Sbjct: 128 SPNSS 126

[Close]

BLAST of Carg28057 vs. ExPASy Swiss-Prot
Match: Q7EB72 (Non-specific lipid transfer protein GPI-anchored 15 OS=Arabidopsis thaliana OX=3702 GN=LTPG15 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-19
Identity = 60/127 (47.24%), Postives = 79/127 (62.20%), Query Frame = 0


Query: 8   FLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQS 67
           F+ LVA   S      S+ C + L +LSPCL+YITG+     ST PS  CCSRL +V++S
Sbjct: 11  FVALVAALWSVTKAQPSSSCVSTLTTLSPCLSYITGN-----STTPSQPCCSRLDSVIKS 70

Query: 68  QPQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANGAAAAPAISPISS 127
            PQC+CSA+N     ++G+ INRT+AL LP AC++QTPP ++CN A G  A P   P  S
Sbjct: 71  SPQCICSAVN-SPIPNIGLNINRTQALQLPNACNIQTPPLTQCNAATGPTAQP---PAPS 128

Query: 128 PGNSPSD 135
           P     D
Sbjct: 131 PTEKTPD 128

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BLAST of Carg28057 vs. ExPASy Swiss-Prot
Match: F4HZB9 (Non-specific lipid transfer protein GPI-anchored 19 OS=Arabidopsis thaliana OX=3702 GN=LTPG19 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-19
Identity = 60/139 (43.17%), Postives = 78/139 (56.12%), Query Frame = 0


Query: 6   ALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVV 65
           A+  L++A  +   +    AGC   L SLSPCL Y+ G      S++PS SCC + +TVV
Sbjct: 4   AILALVIATFLYGGATTVQAGCRDTLTSLSPCLYYLNGG-----SSSPSWSCCRQFSTVV 63

Query: 66  QSQPQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCN-DANGAAAAPAISP 125
           QS P+CLCS +N   +   G   NRT AL LP AC+VQTP PS CN   N     PA +P
Sbjct: 64  QSSPECLCSVVNSNESSFYGFKFNRTLALNLPTACNVQTPSPSLCNTGGNVPTTLPANTP 123

Query: 126 ISSPGNSPSDDEELGEAPT 144
           + SP ++PS       A T
Sbjct: 124 VGSPRSAPSPSGTTSPANT 137

[Close]

BLAST of Carg28057 vs. ExPASy Swiss-Prot
Match: Q2PE59 (Non-specific lipid transfer protein GPI-anchored 26 OS=Arabidopsis thaliana OX=3702 GN=LTPG26 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-15
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 9   LLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQSQ 68
           +L +A       V+  + CT  LIS++PCL++IT       ++ PS  CC++LA VV+  
Sbjct: 8   ILFIALMRVMSIVSAQSSCTNVLISMAPCLSFIT-----QNTSLPSQQCCNQLAHVVRYS 67

Query: 69  PQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDAN 115
            +CLC  L+GG +  LG+ +N T+AL LP AC V+TPP SRC+  +
Sbjct: 68  SECLCQVLDGGGS-QLGINVNETQALALPKACHVETPPASRCHSGS 107

[Close]

BLAST of Carg28057 vs. ExPASy Swiss-Prot
Match: Q8VYI9 (Non-specific lipid transfer protein GPI-anchored 31 OS=Arabidopsis thaliana OX=3702 GN=LTPG31 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.9e-11
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 15  GMSHE---SVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQSQPQC 74
           G SH    + A S  C+T +++++ CL++++  G   T   P  +CCS L TV+++  QC
Sbjct: 28  GASHHHATAPAPSVDCSTLILNMADCLSFVSSGG---TVAKPEGTCCSGLKTVLKADSQC 87

Query: 75  LCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANGAAAAPAISPISSPGNS 134
           LC A    A  SLGVT+N T+A  LP AC +  P  + C    G + AP+ +P  +PG +
Sbjct: 88  LCEAFKSSA--SLGVTLNITKASTLPAACKLHAPSIATC----GLSVAPSTAPGLAPGVA 146

Query: 135 PSDDEELG 140
            +  E  G
Sbjct: 148 AAGPETAG 146

[Close]

BLAST of Carg28057 vs. ExPASy TrEMBL
Match: A0A6J1EXB7 (non-specific lipid-transfer protein-like protein At2g13820 OS=Cucurbita moschata OX=3662 GN=LOC111437366 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.1e-70
Identity = 146/149 (97.99%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MGIESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSR 60
           MGIESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSR
Sbjct: 19  MGIESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSR 78

Query: 61  LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANGAAAAP 120
           LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLP ACSVQTPPPSRCNDANGAAAAP
Sbjct: 79  LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPAACSVQTPPPSRCNDANGAAAAP 138

Query: 121 AISPISSPGNSPSDDEELGEAPTTRELLF 150
           AISPISSPGNSPSDDEELGEAPTTRE  F
Sbjct: 139 AISPISSPGNSPSDDEELGEAPTTRETTF 167

[Close]

BLAST of Carg28057 vs. ExPASy TrEMBL
Match: A0A6J1K123 (non-specific lipid-transfer protein-like protein At2g13820 OS=Cucurbita maxima OX=3661 GN=LOC111491438 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.9e-67
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MGIESALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSR 60
           MGIESALFLLLVAFGMSHESVAQS GCTTALISLSPCLTY TGSGGSSTSTAPSSSCCSR
Sbjct: 1   MGIESALFLLLVAFGMSHESVAQSVGCTTALISLSPCLTYTTGSGGSSTSTAPSSSCCSR 60

Query: 61  LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANGAAAAP 120
           LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLP AC+VQTPPPSRCNDANGAAAAP
Sbjct: 61  LATVVQSQPQCLCSALNGGAAVSLGVTINRTRALGLPAACNVQTPPPSRCNDANGAAAAP 120

Query: 121 AISPISSPGNSPSDDEELGEAPTTRE 147
            ISPISSPG+SPSDDEELGEAPTTRE
Sbjct: 121 PISPISSPGSSPSDDEELGEAPTTRE 146

[Close]

BLAST of Carg28057 vs. ExPASy TrEMBL
Match: A0A1S3BLF1 (non-specific lipid-transfer protein-like protein At2g13820 OS=Cucumis melo OX=3656 GN=LOC103491327 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.9e-38
Identity = 94/140 (67.14%), Postives = 113/140 (80.71%), Query Frame = 0


Query: 7   LFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQ 66
           L  ++V   MSH S+ QS GCTTALI+LSPCLTYI  + G++++T PSSSCCSRLAT+VQ
Sbjct: 10  LVSVVVGLSMSHSSLGQSGGCTTALITLSPCLTYINAAAGTASNT-PSSSCCSRLATIVQ 69

Query: 67  SQPQCLCSALN-GGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANG-AAAAPAISP 126
           SQP+CLCSAL+ GGAA SLGVTIN+TRAL LP AC +QTPPPSRCN+ N    A P +SP
Sbjct: 70  SQPRCLCSALSGGGAAASLGVTINQTRALQLPAACRLQTPPPSRCNENNNEGLATPTVSP 129

Query: 127 ISSPGNSPSDDEELGEAPTT 145
           +SSP NSP D+EE GEAP+T
Sbjct: 130 VSSPENSP-DEEEDGEAPST 147

[Close]

BLAST of Carg28057 vs. ExPASy TrEMBL
Match: A0A0A0KGC1 (AAI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G410100 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 4.2e-38
Identity = 94/138 (68.12%), Postives = 111/138 (80.43%), Query Frame = 0


Query: 9   LLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQSQ 68
           +++V   MSH S+ QS GCTTALI+LSPCLTYI  + G++TS  PSSSCCSRLATV+QS+
Sbjct: 13  VVVVGLSMSHSSLGQSGGCTTALITLSPCLTYINAAAGTTTSNTPSSSCCSRLATVLQSK 72

Query: 69  PQCLCSALN-GGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANGAAAAPAISPISS 128
           P+CLCSAL+ GGAA SLGVTIN+TRAL LP AC +QTPPPSRCN      AAP +SP+SS
Sbjct: 73  PRCLCSALSGGGAAASLGVTINQTRALQLPAACRLQTPPPSRCN----GVAAPTVSPVSS 132

Query: 129 PGNSPSDDEELGEA-PTT 145
           P NSP D+EE GEA PTT
Sbjct: 133 PENSP-DEEEDGEARPTT 145

[Close]

BLAST of Carg28057 vs. ExPASy TrEMBL
Match: A0A5A7UN30 (Non-specific lipid-transfer protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00410 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.5e-38
Identity = 92/131 (70.23%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 16  MSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQSQPQCLCSA 75
           MSH S+ QS GCTTALI+LSPCLTYI  + G++++T PSSSCCSRLAT+VQSQP+CLCSA
Sbjct: 1   MSHSSLGQSGGCTTALITLSPCLTYINAAAGTASNT-PSSSCCSRLATIVQSQPRCLCSA 60

Query: 76  LN-GGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANG-AAAAPAISPISSPGNSPS 135
           L+ GGAA SLGVTIN+TRAL LP AC +QTPPPSRCN+ N    A P +SP+SSP NSP 
Sbjct: 61  LSGGGAAASLGVTINQTRALQLPAACRLQTPPPSRCNENNNEGLATPTVSPVSSPENSP- 120

Query: 136 DDEELGEAPTT 145
           D+EE GEAP+T
Sbjct: 121 DEEEDGEAPST 129

[Close]

BLAST of Carg28057 vs. TAIR 10
Match: AT3G22600.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 114.8 bits (286), Expect = 6.2e-26
Identity = 63/125 (50.40%), Postives = 83/125 (66.40%), Query Frame = 0


Query: 7   LFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQ 66
           +FL +    MS   V+  + CT ALIS+SPCL YITG+     ST+P+  CC++L+ VVQ
Sbjct: 8   VFLTVFMAVMSSTMVSAQSSCTNALISMSPCLNYITGN-----STSPNQQCCNQLSRVVQ 67

Query: 67  SQPQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANGAAAAPAISPIS 126
           S P CLC  LNGG +  LG+ +N+T+ALGLP AC+VQTPP SRCN   G   + + SP  
Sbjct: 68  SSPDCLCQVLNGGGS-QLGINVNQTQALGLPRACNVQTPPVSRCNTGGGGGGSTSDSPAE 126

Query: 127 SPGNS 132
           SP +S
Sbjct: 128 SPNSS 126

[Close]

BLAST of Carg28057 vs. TAIR 10
Match: AT2G48130.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-20
Identity = 60/127 (47.24%), Postives = 79/127 (62.20%), Query Frame = 0


Query: 8   FLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQS 67
           F+ LVA   S      S+ C + L +LSPCL+YITG+     ST PS  CCSRL +V++S
Sbjct: 11  FVALVAALWSVTKAQPSSSCVSTLTTLSPCLSYITGN-----STTPSQPCCSRLDSVIKS 70

Query: 68  QPQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDANGAAAAPAISPISS 127
            PQC+CSA+N     ++G+ INRT+AL LP AC++QTPP ++CN A G  A P   P  S
Sbjct: 71  SPQCICSAVN-SPIPNIGLNINRTQALQLPNACNIQTPPLTQCNAATGPTAQP---PAPS 128

Query: 128 PGNSPSD 135
           P     D
Sbjct: 131 PTEKTPD 128

[Close]

BLAST of Carg28057 vs. TAIR 10
Match: AT1G03103.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-20
Identity = 60/139 (43.17%), Postives = 78/139 (56.12%), Query Frame = 0


Query: 6   ALFLLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVV 65
           A+  L++A  +   +    AGC   L SLSPCL Y+ G      S++PS SCC + +TVV
Sbjct: 4   AILALVIATFLYGGATTVQAGCRDTLTSLSPCLYYLNGG-----SSSPSWSCCRQFSTVV 63

Query: 66  QSQPQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCN-DANGAAAAPAISP 125
           QS P+CLCS +N   +   G   NRT AL LP AC+VQTP PS CN   N     PA +P
Sbjct: 64  QSSPECLCSVVNSNESSFYGFKFNRTLALNLPTACNVQTPSPSLCNTGGNVPTTLPANTP 123

Query: 126 ISSPGNSPSDDEELGEAPT 144
           + SP ++PS       A T
Sbjct: 124 VGSPRSAPSPSGTTSPANT 137

[Close]

BLAST of Carg28057 vs. TAIR 10
Match: AT4G14815.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-16
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 9   LLLVAFGMSHESVAQSAGCTTALISLSPCLTYITGSGGSSTSTAPSSSCCSRLATVVQSQ 68
           +L +A       V+  + CT  LIS++PCL++IT       ++ PS  CC++LA VV+  
Sbjct: 8   ILFIALMRVMSIVSAQSSCTNVLISMAPCLSFIT-----QNTSLPSQQCCNQLAHVVRYS 67

Query: 69  PQCLCSALNGGAAVSLGVTINRTRALGLPVACSVQTPPPSRCNDAN 115
            +CLC  L+GG +  LG+ +N T+AL LP AC V+TPP SRC+  +
Sbjct: 68  SECLCQVLDGGGS-QLGINVNETQALALPKACHVETPPASRCHSGS 107

[Close]

BLAST of Carg28057 vs. TAIR 10
Match: AT3G43720.2 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-12
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 0


Query: 27  CTTALISLSPCLTYIT-GSGGSSTSTAPSSSCCSRLATVVQSQPQCLCSALNGGAAVSLG 86
           C   L++++ CL+Y+T G GG +    P  +CC  LA +V+S PQCLC  L+G  A  LG
Sbjct: 38  CMANLMNMTGCLSYVTVGEGGGAAK--PDKTCCPALAGLVESSPQCLCYLLSGDMAAQLG 97

Query: 87  VTINRTRALGLPVACSVQTPPPSRCNDANGAAAAP------AISPISSPGNSPSDDEELG 144
           + I++ +AL LP  C V TP PS C+       AP        SP  +PG+        G
Sbjct: 98  IKIDKAKALKLPGVCGVITPDPSLCSLFGIPVGAPVAMGDEGASPAYAPGSMSESPGGFG 157

The following BLAST results are available for this feature:

BLAST of Carg28057 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606419.1	1.3e-73	100.00	Non-specific lipid transfer protein GPI-anchored 2, partial [Cucurbita argyrospe...	[more]
XP_022931068.1	2.3e-70	97.99	non-specific lipid-transfer protein-like protein At2g13820 [Cucurbita moschata]	[more]
XP_023534720.1	3.3e-69	96.64	non-specific lipid-transfer protein-like protein At2g13820 [Cucurbita pepo subsp...	[more]
XP_022996122.1	4.0e-67	95.89	non-specific lipid-transfer protein-like protein At2g13820 [Cucurbita maxima]	[more]
XP_038888862.1	2.9e-41	68.28	non-specific lipid transfer protein GPI-anchored 19-like [Benincasa hispida]	[more]

BLAST of Carg28057 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LJ86	8.7e-25	50.40	Non-specific lipid transfer protein GPI-anchored 5 OS=Arabidopsis thaliana OX=37...	[more]
Q7EB72	1.4e-19	47.24	Non-specific lipid transfer protein GPI-anchored 15 OS=Arabidopsis thaliana OX=3...	[more]
F4HZB9	2.5e-19	43.17	Non-specific lipid transfer protein GPI-anchored 19 OS=Arabidopsis thaliana OX=3...	[more]
Q2PE59	3.7e-15	41.51	Non-specific lipid transfer protein GPI-anchored 26 OS=Arabidopsis thaliana OX=3...	[more]
Q8VYI9	1.9e-11	35.94	Non-specific lipid transfer protein GPI-anchored 31 OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Carg28057 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EXB7	1.1e-70	97.99	non-specific lipid-transfer protein-like protein At2g13820 OS=Cucurbita moschata...	[more]
A0A6J1K123	1.9e-67	95.89	non-specific lipid-transfer protein-like protein At2g13820 OS=Cucurbita maxima O...	[more]
A0A1S3BLF1	1.9e-38	67.14	non-specific lipid-transfer protein-like protein At2g13820 OS=Cucumis melo OX=36...	[more]
A0A0A0KGC1	4.2e-38	68.12	AAI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G410100 PE=4 SV...	[more]
A0A5A7UN30	5.5e-38	70.23	Non-specific lipid-transfer protein-like protein OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of Carg28057 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22600.1	6.2e-26	50.40	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT2G48130.1	1.0e-20	47.24	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G03103.1	1.7e-20	43.17	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT4G14815.1	2.6e-16	41.51	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G43720.2	1.0e-12	37.10	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 27..110 e-value: 1.1E-7 score: 41.6
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 18..110 e-value: 3.9E-15 score: 55.8
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 24..110 e-value: 1.1E-16 score: 62.5
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 26..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..152
None	No IPR available	PANTHER	PTHR33044:SF198	NON-SPECIFIC LIPID TRANSFER PROTEIN GPI-ANCHORED 2-LIKE ISOFORM X1	coord: 10..125
None	No IPR available	CDD	cd00010	AAI_LTSS	coord: 34..102 e-value: 2.00445E-11 score: 54.3551
IPR043325	Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein	PANTHER	PTHR33044	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED	coord: 10..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28057-RA	Carg28057-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0005886	plasma membrane