Carg28045 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28045
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S25
Location	Carg_Chr03: 1094368 .. 1097586 (+)
RNA-Seq Expression	Carg28045
Synteny	Carg28045

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTAACCCTTTGGAAACCCTAGACTTTTTTAAGTACCTGTATTTTCCTCTGGTTTGAGCTCTCCAGCCAGAGTTCTTCGCCTCTGTAATCAACGTTCTGCGTAGTCTTCCAACCAGATTCTCAGCGGCTGACCCCTCAACATGGTATGTTATTGCTTCAAAATCCTACAAATTATCTTCTTTTTCCTTGTATTACTTCATTTTTCTTACGGAATCGAGTAAGGCTGGTGTAGAATCATCTTGCGATTTGCTGCAATTTTTCTACATTCTCATTCTGTAGTTTAATCTATGCTAGATCACCGGGTATTTGTCTGGTTTTGTGAAAATTTGCGACGTAAGTCGTTGTCGGAGTTTGTCGTTCTATAGTATTGTTATTTACTGGAAAACAAAGCAGAATAGCCACCTTCGGTTTGCGATATAATTGTTGTGTGTTTGTATAATGTTGTAGGAAGGTTTCTCTGTTGCAATTTTCTATACATGAGGTCCAATTGTAAAATTACAAGTAATGTTTTTACTTAGTGTGGAACAGTTGGGAAGTTCTAAGTGTTTATCTGATTTATGAACATGAGTGATGTAAACTTTCTCCTGCTTGGTATCCATCTGGCAGGCACCGAAGAAGGATAAGGCTCCTCCTCCGTCCTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGGTAATTTGTTTTGTGAGGACTGCTTTGTTTTTAATGTTTAGGCCCGTTGATAACCATTTAATTCTTGGTTTTTGAAAATTAAGCTCATAAACTCTACTTCCACCCATAAAACAATTTGTTTTTGAATATGTTTTTCAAAATCTAAGCCAAAATTTGCAAACTAAAAAACGTAGGGCATGTTTGATAACCATTTTATAAACATTTTAGAGATGTTTTCAAAATCTAAGTCAAGTTTTGAAAGCTGAAGAAGTAGTTCTTATAAACTTGTTTTTGTTTTGGAATTTAGTTATGAATTCAAAATGTTTCTCATGACTGATGATGGAAACCTTTGTGAATAAATTATGAGAAAATTTGCCCATTTTTCAAAAACTAAAAATAAAAAATCAAATGGTTATCAAACAAGATCATCGTTTTTTTAAAACTTGTTTTCTTTTTTTGGAATTTGACATTCGAGTGTTTCTTCAAGAAGTGTGAAATCATAGTAAAGAAATGGTAAGGAAATAAACACAATTAAAAAAGAAACAAATAACAAAATTGTTATCAAATGAGACCATAGTCATTAGGGCTAGTGAGTATTCAGGTACATCTTTCTTTCAGGCCTGTTACTTACTTTTGGTTCTGTTATTTTATTTCTTATGTTGTTTATTGCACAGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTATTGTTTGATCAGGGAAGCTATGACAAGCTTCTTTCAGAAGTTCCAAAGTACAAGCTTATTACTCCTTCCATCCTTTCAGACAGATTAAGGGTATGGCTTGCTTAATCCCATTTAGCTTGTATCTTCACATGTTGTAAATGCATGTCTTTGGATTGTTGAATATGGACCATGCGTCTTAATGTTAGTTTGAAATTTGTGTCCCCTACAATACTTCTCTCTTCAATCAGTTGAATAAGACCTGTGAGATCCCACATCGGTGGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACTTTTCTCTAGCAGACATGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGAAAAGGCCAAATAGGACAATATCTGCTAGCAGTGAGCTTGAGTTGTTACAAATGATATCAAAGTTAAGACATTGAGCGATGTGCCATTGAGGAGGTTGTGCCTCGAAGGGAGTGGACACGAGGTGGTGTACCAGCAAGGACGCTGGACTCTGAAGAGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAATGAATCATTATTTATAAGGATGTGGAAACGTCTCCCTAGCAGACACGTTTTAAAAACCTTGAGGAGAAGCCTGATAGGGAAAGTCCAAAGAGGACAATATCTGCTAGCTGTGAGCTTGGACTATTACAAAACCAAGCCCCACTCTCCACTAAAAAACGGAATGGAAAAGAAGTTGGGGGGTGGATGATTATACATTGAGCTTTTTTTTTTTTTTTTTTTTTGTCTGCTTTTATGAATTCCAATGTATGATTATCACATCCAAGTCAAAGACTTTTCGTACTATATTGTTATAGATCAACCTTTATTTGTTAAAATCTTCATTTAATTAAGCATGTAATCATGTTTCTATCCGTTTCTAAAACATAATCGGACTCATTCGAGCGATGATTTAAATTATAGTTGCATTGTATTACACTTTCATAATTTCTGTCTTCTGTTTTCTCATACCATATTCCAAATGTGTCATTTATTTGAGATGTTGCACTACTCCCATGTTTAAACTGCATATCCATATGGATAACACAATTACAAAGTGATCTCTGTTGGTTTGATTTCTTGTCAGCAAGGTGTTGTATTGTGTACATTATTAATCCATGTGTATAAGCAATTATTCTTAAACCATAAGAGTTGGATATCTTTTGTGACTATCCCTTGATGTGAAGTATCTGATATCTCTAGTCAATATAAAGTGCCAAATATCCTCCATATGACCCGTTTTTTAGACGAATTCGTTTGGTTAGCATGTCATTCATGTAATCAAACCGAACTGTGGCTGGTTCTACTTGGATGGATCGTTGTCAAGATGGTAAATTGCTAAAAATCTTTCTCTGTTTGTTGTTCATTACTGTTCATCAGATCAATGGATCGTTGGCTCGTCGGGCGATAAAGGATTTAATGGCGAGAGGCTCTATTAGGCTCGTATCTGCTCATGCTAGCCAGCTAATATACACTAGAGCCACAAACACATGATCAAAGCGTTGGCGTTTGAAAGAGGAACATCTTGTTATTTTTGTGAGCTTCCTTTCAAGAACTATCTATGCTTTTGTATCTTCTGCATTCATGGAACGCATGCTGCTCTGAAAACTTCACGAATTATTTGCACTGCTTAATTTCTTATCTATGGAGTAACAATTTCTCTGAAACTAGACATCCTATTGTGAAATAGAATGGTTTCATGTTCCTTCATCGATTGGTTATTCCTTCCCGTTCTTTCTCTTTTTTCAATTGAGGTATCGATTAGTTTACAAGATTGAATGACTTTGATTTTGTATTAATACAATATCTATCCTTACTCCA

mRNA sequence

AATTAACCCTTTGGAAACCCTAGACTTTTTTAAGTACCTGTATTTTCCTCTGGTTTGAGCTCTCCAGCCAGAGTTCTTCGCCTCTGTAATCAACGTTCTGCGTAGTCTTCCAACCAGATTCTCAGCGGCTGACCCCTCAACATGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTATTGTTTGATCAGGGAAGCTATGACAAGCTTCTTTCAGAAGTTCCAAAGTACAAGCTTATTACTCCTTCCATCCTTTCAGACAGATTAAGGATCAATGGATCGTTGGCTCGTCGGGCGATAAAGGATTTAATGGCGAGAGGCTCTATTAGGCTCGTATCTGCTCATGCTAGCCAGCTAATATACACTAGAGCCACAAACACATGATCAAAGCGTTGGCGTTTGAAAGAGGAACATCTTGTTATTTTTGTGAGCTTCCTTTCAAGAACTATCTATGCTTTTGTATCTTCTGCATTCATGGAACGCATGCTGCTCTGAAAACTTCACGAATTATTTGCACTGCTTAATTTCTTATCTATGGAGTAACAATTTCTCTGAAACTAGACATCCTATTGTGAAATAGAATGGTTTCATGTTCCTTCATCGATTGGTTATTCCTTCCCGTTCTTTCTCTTTTTTCAATTGAGGTATCGATTAGTTTACAAGATTGAATGACTTTGATTTTGTATTAATACAATATCTATCCTTACTCCA

Coding sequence (CDS)

ATGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTATTGTTTGATCAGGGAAGCTATGACAAGCTTCTTTCAGAAGTTCCAAAGTACAAGCTTATTACTCCTTCCATCCTTTCAGACAGATTAAGGATCAATGGATCGTTGGCTCGTCGGGCGATAAAGGATTTAATGGCGAGAGGCTCTATTAGGCTCGTATCTGCTCATGCTAGCCAGCTAATATACACTAGAGCCACAAACACATGA

Protein sequence

MKWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLVSAHASQLIYTRATNT

Homology

[Close]

BLAST of Carg28045 vs. NCBI nr
Match: KAG7033553.1 (40S ribosomal protein S25 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.8 bits (403), Expect = 9.8e-36
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MKWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLM 60
          MKWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLM
Sbjct: 1  MKWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLM 60

Query: 61 ARGSIRLVSAHASQLIYTRATNT 84
          ARGSIRLVSAHASQLIYTRATNT
Sbjct: 61 ARGSIRLVSAHASQLIYTRATNT 83

[Close]

BLAST of Carg28045 vs. NCBI nr
Match: XP_022928621.1 (40S ribosomal protein S25-like [Cucurbita moschata] >XP_022967929.1 40S ribosomal protein S25 [Cucurbita maxima] >XP_023543611.1 40S ribosomal protein S25-like [Cucurbita pepo subsp. pepo] >KAG6603251.1 40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.9 bits (398), Expect = 3.7e-35
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIRLVSAHASQLIYTRATNT
Sbjct: 87  RGSIRLVSAHASQLIYTRATNT 108

[Close]

BLAST of Carg28045 vs. NCBI nr
Match: KAG9440264.1 (hypothetical protein H6P81_020429 [Aristolochia fimbriata])

HSP 1 Score: 153.3 bits (386), Expect = 9.2e-34
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLM+
Sbjct: 27  KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMS 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIRLVSAHASQ IYTRATNT
Sbjct: 87  RGSIRLVSAHASQQIYTRATNT 108

[Close]

BLAST of Carg28045 vs. NCBI nr
Match: XP_008391134.1 (40S ribosomal protein S25-like [Malus domestica] >XP_028955746.1 40S ribosomal protein S25-like [Malus domestica] >KAB2619834.1 40S ribosomal protein S25-like [Pyrus ussuriensis x Pyrus communis] >RXH83406.1 hypothetical protein DVH24_005659 [Malus domestica] >RXI04825.1 hypothetical protein DVH24_039099 [Malus domestica] >RXI09942.1 hypothetical protein DVH24_018971 [Malus domestica])

HSP 1 Score: 152.9 bits (385), Expect = 1.2e-33
Identity = 78/82 (95.12%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIRL++AHASQ IYTRATNT
Sbjct: 87  RGSIRLIAAHASQQIYTRATNT 108

[Close]

BLAST of Carg28045 vs. NCBI nr
Match: KAG9444381.1 (hypothetical protein H6P81_015721 [Aristolochia fimbriata])

HSP 1 Score: 152.1 bits (383), Expect = 2.1e-33
Identity = 78/82 (95.12%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLARRAI+DLMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIRDLMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIRLVS+HASQ IYTRATNT
Sbjct: 87  RGSIRLVSSHASQQIYTRATNT 108

[Close]

BLAST of Carg28045 vs. ExPASy Swiss-Prot
Match: P46301 (40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 9.6e-34
Identity = 72/82 (87.80%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFD+ +YDKLLSE PKYKLITPS+LSDRLRI+GSLAR+AI+DLMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIR+VSAHASQ IYTRATNT
Sbjct: 87  RGSIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of Carg28045 vs. ExPASy Swiss-Prot
Match: Q9SIK2 (40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.7e-33
Identity = 70/82 (85.37%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLL+E PK+KLITPSILSDR+RINGSLARRAI++LMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           +G IR+VSAH+SQ IYTRATNT
Sbjct: 87  KGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of Carg28045 vs. ExPASy Swiss-Prot
Match: Q8GYL5 (40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 4.0e-32
Identity = 69/81 (85.19%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQ +YDKLLSE PK+KLITPSILSDRLRINGSLARRAI++LMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMA 86

Query: 62  RGSIRLVSAHASQLIYTRATN 83
           +G+IR+VSAH+SQ IYTRAT+
Sbjct: 87  KGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Carg28045 vs. ExPASy Swiss-Prot
Match: Q9T029 (40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.3e-32
Identity = 68/82 (82.93%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQ +YDKLL+E PK+KLITPSILSDR+RINGSLARRAI++LMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           +G IR+V+AH+SQ IYTRATNT
Sbjct: 87  KGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of Carg28045 vs. ExPASy Swiss-Prot
Match: Q9SIW5 (40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3)

HSP 1 Score: 131.0 bits (328), Expect = 6.4e-30
Identity = 65/80 (81.25%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQ +YDKL+SE PK+KLITPSILSDRLRINGSLAR+AI+DLM 
Sbjct: 27  KWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMV 86

Query: 62  RGSIRLVSAHASQLIYTRAT 82
           +G+IR+VS H+SQ I TRAT
Sbjct: 87  KGTIRMVSTHSSQQINTRAT 106

[Close]

BLAST of Carg28045 vs. ExPASy TrEMBL
Match: A0A6J1HY46 (40S ribosomal protein S25 OS=Cucurbita maxima OX=3661 GN=LOC111467295 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.8e-35
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIRLVSAHASQLIYTRATNT
Sbjct: 87  RGSIRLVSAHASQLIYTRATNT 108

[Close]

BLAST of Carg28045 vs. ExPASy TrEMBL
Match: A0A6J1EKT2 (40S ribosomal protein S25 OS=Cucurbita moschata OX=3662 GN=LOC111435474 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.8e-35
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIRLVSAHASQLIYTRATNT
Sbjct: 87  RGSIRLVSAHASQLIYTRATNT 108

[Close]

BLAST of Carg28045 vs. ExPASy TrEMBL
Match: A0A5B7BSZ6 (40S ribosomal protein S25 OS=Davidia involucrata OX=16924 GN=Din_041531 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.4e-34
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIR+VSAHASQ IYTRATNT
Sbjct: 87  RGSIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of Carg28045 vs. ExPASy TrEMBL
Match: A0A498IJ67 (40S ribosomal protein S25 OS=Malus domestica OX=3750 GN=DVH24_005659 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.8e-34
Identity = 78/82 (95.12%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIRL++AHASQ IYTRATNT
Sbjct: 87  RGSIRLIAAHASQQIYTRATNT 108

[Close]

BLAST of Carg28045 vs. ExPASy TrEMBL
Match: A0A5N5H9J7 (40S ribosomal protein S25 OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_040484 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.8e-34
Identity = 78/82 (95.12%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           RGSIRL++AHASQ IYTRATNT
Sbjct: 87  RGSIRLIAAHASQQIYTRATNT 108

[Close]

BLAST of Carg28045 vs. TAIR 10
Match: AT2G21580.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 141.4 bits (355), Expect = 3.4e-34
Identity = 70/82 (85.37%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLL+E PK+KLITPSILSDR+RINGSLARRAI++LMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           +G IR+VSAH+SQ IYTRATNT
Sbjct: 87  KGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of Carg28045 vs. TAIR 10
Match: AT2G21580.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 141.4 bits (355), Expect = 3.4e-34
Identity = 70/82 (85.37%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQG+YDKLL+E PK+KLITPSILSDR+RINGSLARRAI++LMA
Sbjct: 26  KWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMA 85

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           +G IR+VSAH+SQ IYTRATNT
Sbjct: 86  KGLIRMVSAHSSQQIYTRATNT 107

[Close]

BLAST of Carg28045 vs. TAIR 10
Match: AT4G34555.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 138.3 bits (347), Expect = 2.9e-33
Identity = 69/81 (85.19%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQ +YDKLLSE PK+KLITPSILSDRLRINGSLARRAI++LMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMA 86

Query: 62  RGSIRLVSAHASQLIYTRATN 83
           +G+IR+VSAH+SQ IYTRAT+
Sbjct: 87  KGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Carg28045 vs. TAIR 10
Match: AT4G39200.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 137.9 bits (346), Expect = 3.7e-33
Identity = 68/82 (82.93%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQ +YDKLL+E PK+KLITPSILSDR+RINGSLARRAI++LMA
Sbjct: 27  KWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMA 86

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           +G IR+V+AH+SQ IYTRATNT
Sbjct: 87  KGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of Carg28045 vs. TAIR 10
Match: AT4G39200.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 137.9 bits (346), Expect = 3.7e-33
Identity = 68/82 (82.93%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 2   KWSKGKQKEKVNNMVLFDQGSYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMA 61
           KWSKGKQKEKVNNMVLFDQ +YDKLL+E PK+KLITPSILSDR+RINGSLARRAI++LMA
Sbjct: 26  KWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMA 85

Query: 62  RGSIRLVSAHASQLIYTRATNT 84
           +G IR+V+AH+SQ IYTRATNT
Sbjct: 86  KGVIRMVAAHSSQQIYTRATNT 107

The following BLAST results are available for this feature:

BLAST of Carg28045 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033553.1	9.8e-36	100.00	40S ribosomal protein S25 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022928621.1	3.7e-35	100.00	40S ribosomal protein S25-like [Cucurbita moschata] >XP_022967929.1 40S ribosoma...	[more]
KAG9440264.1	9.2e-34	96.34	hypothetical protein H6P81_020429 [Aristolochia fimbriata]	[more]
XP_008391134.1	1.2e-33	95.12	40S ribosomal protein S25-like [Malus domestica] >XP_028955746.1 40S ribosomal p...	[more]
KAG9444381.1	2.1e-33	95.12	hypothetical protein H6P81_015721 [Aristolochia fimbriata]	[more]

BLAST of Carg28045 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46301	9.6e-34	87.80	40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1	[more]
Q9SIK2	4.7e-33	85.37	40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1	[more]
Q8GYL5	4.0e-32	85.19	40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2	[more]
Q9T029	5.3e-32	82.93	40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1	[more]
Q9SIW5	6.4e-30	81.25	40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3	[more]

BLAST of Carg28045 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HY46	1.8e-35	100.00	40S ribosomal protein S25 OS=Cucurbita maxima OX=3661 GN=LOC111467295 PE=3 SV=1	[more]
A0A6J1EKT2	1.8e-35	100.00	40S ribosomal protein S25 OS=Cucurbita moschata OX=3662 GN=LOC111435474 PE=3 SV=...	[more]
A0A5B7BSZ6	3.4e-34	96.34	40S ribosomal protein S25 OS=Davidia involucrata OX=16924 GN=Din_041531 PE=3 SV=...	[more]
A0A498IJ67	5.8e-34	95.12	40S ribosomal protein S25 OS=Malus domestica OX=3750 GN=DVH24_005659 PE=3 SV=1	[more]
A0A5N5H9J7	5.8e-34	95.12	40S ribosomal protein S25 OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8...	[more]

BLAST of Carg28045 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21580.1	3.4e-34	85.37	Ribosomal protein S25 family protein	[more]
AT2G21580.2	3.4e-34	85.37	Ribosomal protein S25 family protein	[more]
AT4G34555.1	2.9e-33	85.19	Ribosomal protein S25 family protein	[more]
AT4G39200.1	3.7e-33	82.93	Ribosomal protein S25 family protein	[more]
AT4G39200.2	3.7e-33	82.93	Ribosomal protein S25 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.63.20		coord: 1..83 e-value: 1.3E-37 score: 129.7
None	No IPR available	PANTHER	PTHR12850:SF31	BNAA04G12260D PROTEIN	coord: 2..83
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 2..80 e-value: 3.6E-35 score: 120.2
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	40S RIBOSOMAL PROTEIN S25	coord: 2..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28045-RA	Carg28045-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome