Carg28038 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28038
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cell division topological specificity factor homolog, chloroplastic-like
Location	Carg_Chr05: 7159743 .. 7161313 (-)
RNA-Seq Expression	Carg28038
Synteny	Carg28038

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGTGCTCACTGAAAGCCGAGAGTGGGTGGCTTCTGTGCACACCAGCGACAACGGCGCTCATCTGAAGGGAAACGAACACACACAATCGACAGCCCATACGCAAATGGCGGTTTCTGGAGATCTCAGAGTCTCCGCAACACTCTGCTCTCACCATCCTCACCCTCGTCGGACTTCTTTTCCCTCTTCGAAGGTCCATTTTCTCTTCTCTTTCGATCTCTTCTTATATTCTTCCTTCGATTGCTTCATTGTTTAACGAAGCGTCGGAAATTTTCTCTGAATGTGGAATCTGGTGGCTCAAAGATATGAATTCTTTGATTCTTTCTGTGAATTTTTTCTTGCCTGTTTCTCCAATGGAGCATTTATGAATTGGAGGCGCTGTCAACCCTAGCTCTGCACTTTGTTCTTTTTGTATTACTATTATTATTTATCGGATTCCTGAATTGTGTTCCAGATTTCTAGGGTTTTACGTGAATTCTAGCATCTTTTTGTTTTCCTTCATTTTGTACGACAATCGCTTGTGGCGGCGTTTGGTTGAAACTTCTTTAGATTTTTTGACAGGAATTCTCTCTGCCTGGCCCATAGGCTGTTGTTTTGTGCAATCTTTATTGAATATATTCCTCGTGGTCTTGTTAAAATCAATGTTGTGAGACCCACCATGTAAATCTAGATTTAGGGTATAGTGAAGAATGTGATGTACCTTAAACAGTTGGGAGAGAAGTTCATTTCTATTTCATCTTCTATCATTGTTCAAATGTAATCTTTGTTAGGTTTATACCGAATCGAAAGGAAAATCGTAGAGATTCTAGTCTAAGGAAAACTCCAAGAGCTCACCTTCACAGATCATACATTTCAGAATGATTCTTATTCTGTAATTGAACCAACTAATTCGTTGGAAGCTATTCTGAATTTTGACTTGGAAACAATTGGACGATATGCCTTGTTGCTTATTGTAGCATTTGTGTTTCATCCTAGGTTGAGTTCTCTGGCTTTTCAAGTGGAGGGCTTAGCAGTCATGATGTTGCACTAAAATGGCGTAACATGGCAATCGATAGTCGTAATAGGCGTGGCATTTCACAGATAACTACTCGGAGCTCAGAAAGTCATGAAATGTCGTCGAAAACATCAAGCCAAGAAGCCGAAACCTTCCTTCTGAATGCCATAAACATGAACTTCTTTGAGCGGTTGAACTTAGCTTGGAGAATTTTGTTTCCTACTCCAACATCGAAGAGAAATTCGAATGCCTTGATCGCCAAACAGCGACTAAAGATGATACTCTTTGCTGACCGATGTGCAGTTAGCGACGAGGCTAAACGAAAGATCGTTAGTAACATAGTGCAAGCTCTATCAGACTTCGTTGAAATCGAATCGAAGGATAAAGTTGAGTTGAGCATGTCAACGGATTCTGATCTTGGAACCATTTACTCTGTCACGGTACCTGTGAGAAGGGTGAAAGCAGAATATCAAGAAGCAGACGAGAGTGCAACGATAACGAACATCGAGTACAAAGATAACGGTGAGACGACTGGTTCTGTTGATGTGAGGTTTGATTTCTTCATTCCAGATTGA

mRNA sequence

ATGCCAGTGCTCACTGAAAGCCGAGAGTGGGTGGCTTCTGTGCACACCAGCGACAACGGCGCTCATCTGAAGGGAAACGAACACACACAATCGACAGCCCATACGCAAATGGCGGTTTCTGGAGATCTCAGAGTCTCCGCAACACTCTGCTCTCACCATCCTCACCCTCGTCGGACTTCTTTTCCCTCTTCGAAGGTTGAGTTCTCTGGCTTTTCAAGTGGAGGGCTTAGCAGTCATGATGTTGCACTAAAATGGCGTAACATGGCAATCGATAGTCGTAATAGGCGTGGCATTTCACAGATAACTACTCGGAGCTCAGAAAGTCATGAAATGTCGTCGAAAACATCAAGCCAAGAAGCCGAAACCTTCCTTCTGAATGCCATAAACATGAACTTCTTTGAGCGGTTGAACTTAGCTTGGAGAATTTTGTTTCCTACTCCAACATCGAAGAGAAATTCGAATGCCTTGATCGCCAAACAGCGACTAAAGATGATACTCTTTGCTGACCGATGTGCAGTTAGCGACGAGGCTAAACGAAAGATCGTTAGTAACATAGTGCAAGCTCTATCAGACTTCGTTGAAATCGAATCGAAGGATAAAGTTGAGTTGAGCATGTCAACGGATTCTGATCTTGGAACCATTTACTCTGTCACGGTACCTGTGAGAAGGGTGAAAGCAGAATATCAAGAAGCAGACGAGAGTGCAACGATAACGAACATCGAGTACAAAGATAACGGTGAGACGACTGGTTCTGTTGATGTGAGGTTTGATTTCTTCATTCCAGATTGA

Coding sequence (CDS)

ATGCCAGTGCTCACTGAAAGCCGAGAGTGGGTGGCTTCTGTGCACACCAGCGACAACGGCGCTCATCTGAAGGGAAACGAACACACACAATCGACAGCCCATACGCAAATGGCGGTTTCTGGAGATCTCAGAGTCTCCGCAACACTCTGCTCTCACCATCCTCACCCTCGTCGGACTTCTTTTCCCTCTTCGAAGGTTGAGTTCTCTGGCTTTTCAAGTGGAGGGCTTAGCAGTCATGATGTTGCACTAAAATGGCGTAACATGGCAATCGATAGTCGTAATAGGCGTGGCATTTCACAGATAACTACTCGGAGCTCAGAAAGTCATGAAATGTCGTCGAAAACATCAAGCCAAGAAGCCGAAACCTTCCTTCTGAATGCCATAAACATGAACTTCTTTGAGCGGTTGAACTTAGCTTGGAGAATTTTGTTTCCTACTCCAACATCGAAGAGAAATTCGAATGCCTTGATCGCCAAACAGCGACTAAAGATGATACTCTTTGCTGACCGATGTGCAGTTAGCGACGAGGCTAAACGAAAGATCGTTAGTAACATAGTGCAAGCTCTATCAGACTTCGTTGAAATCGAATCGAAGGATAAAGTTGAGTTGAGCATGTCAACGGATTCTGATCTTGGAACCATTTACTCTGTCACGGTACCTGTGAGAAGGGTGAAAGCAGAATATCAAGAAGCAGACGAGAGTGCAACGATAACGAACATCGAGTACAAAGATAACGGTGAGACGACTGGTTCTGTTGATGTGAGGTTTGATTTCTTCATTCCAGATTGA

Protein sequence

MPVLTESREWVASVHTSDNGAHLKGNEHTQSTAHTQMAVSGDLRVSATLCSHHPHPRRTSFPSSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRRGISQITTRSSESHEMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNALIAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYSVTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD

Homology

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BLAST of Carg28038 vs. NCBI nr
Match: KAG7029977.1 (Cell division topological specificity factor-like, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 506.1 bits (1302), Expect = 1.8e-139
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   MPVLTESREWVASVHTSDNGAHLKGNEHTQSTAHTQMAVSGDLRVSATLCSHHPHPRRTS 60
           MPVLTESREWVASVHTSDNGAHLKGNEHTQSTAHTQMAVSGDLRVSATLCSHHPHPRRTS
Sbjct: 1   MPVLTESREWVASVHTSDNGAHLKGNEHTQSTAHTQMAVSGDLRVSATLCSHHPHPRRTS 60

Query: 61  FPSSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRRGISQITTRSSESHEMSSKTSSQEA 120
           FPSSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRRGISQITTRSSESHEMSSKTSSQEA
Sbjct: 61  FPSSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRRGISQITTRSSESHEMSSKTSSQEA 120

Query: 121 ETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNALIAKQRLKMILFADRCAVSDEAKRK 180
           ETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNALIAKQRLKMILFADRCAVSDEAKRK
Sbjct: 121 ETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNALIAKQRLKMILFADRCAVSDEAKRK 180

Query: 181 IVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYSVTVPVRRVKAEYQEADESATITNI 240
           IVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYSVTVPVRRVKAEYQEADESATITNI
Sbjct: 181 IVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYSVTVPVRRVKAEYQEADESATITNI 240

Query: 241 EYKDNGETTGSVDVRFDFFIPD 263
           EYKDNGETTGSVDVRFDFFIPD
Sbjct: 241 EYKDNGETTGSVDVRFDFFIPD 262

[Close]

BLAST of Carg28038 vs. NCBI nr
Match: KAG6599013.1 (Cell division topological specificity factor-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 503.8 bits (1296), Expect = 8.8e-139
Identity = 261/262 (99.62%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 1   MPVLTESREWVASVHTSDNGAHLKGNEHTQSTAHTQMAVSGDLRVSATLCSHHPHPRRTS 60
           MPVLTESREWVASVHTSDNGAHLKGNEHTQSTAHTQMAVSGDLRVSATLCSHHPHPRRTS
Sbjct: 1   MPVLTESREWVASVHTSDNGAHLKGNEHTQSTAHTQMAVSGDLRVSATLCSHHPHPRRTS 60

Query: 61  FPSSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRRGISQITTRSSESHEMSSKTSSQEA 120
           FPSSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRRGISQITTRSSES+EMSSKTSSQEA
Sbjct: 61  FPSSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRRGISQITTRSSESYEMSSKTSSQEA 120

Query: 121 ETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNALIAKQRLKMILFADRCAVSDEAKRK 180
           ETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNALIAKQRLKMILFADRCAVSDEAKRK
Sbjct: 121 ETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNALIAKQRLKMILFADRCAVSDEAKRK 180

Query: 181 IVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYSVTVPVRRVKAEYQEADESATITNI 240
           IVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYSVTVPVRRVKAEYQEADESATITNI
Sbjct: 181 IVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYSVTVPVRRVKAEYQEADESATITNI 240

Query: 241 EYKDNGETTGSVDVRFDFFIPD 263
           EYKDNGETTGSVDVRFDFFIPD
Sbjct: 241 EYKDNGETTGSVDVRFDFFIPD 262

[Close]

BLAST of Carg28038 vs. NCBI nr
Match: XP_023520464.1 (cell division topological specificity factor homolog, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 430.6 bits (1106), Expect = 9.4e-117
Identity = 224/226 (99.12%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 37  MAVSGDLRVSATLCSHHPHPRRTSFPSSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRR 96
           MAVSGDLRVSATLCSHHPHPRRTSFPSSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRR
Sbjct: 1   MAVSGDLRVSATLCSHHPHPRRTSFPSSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRR 60

Query: 97  GISQITTRSSESHEMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL 156
           G+SQITTRSSES+EMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL
Sbjct: 61  GVSQITTRSSESYEMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL 120

Query: 157 IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS 216
           IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS 180

Query: 217 VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD 263
           VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD 226

[Close]

BLAST of Carg28038 vs. NCBI nr
Match: XP_022946006.1 (cell division topological specificity factor homolog, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 429.1 bits (1102), Expect = 2.7e-116
Identity = 224/226 (99.12%), Postives = 225/226 (99.56%), Query Frame = 0


Query: 37  MAVSGDLRVSATLCSHHPHPRRTSFPSSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRR 96
           MAVSGDLRVSATLCSHHPHPRRTSFPS KVEFSGFSSGGLSSHDVALKWRNMAIDSRNRR
Sbjct: 1   MAVSGDLRVSATLCSHHPHPRRTSFPSPKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRR 60

Query: 97  GISQITTRSSESHEMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL 156
           GISQITTRSSES+EMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL
Sbjct: 61  GISQITTRSSESYEMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL 120

Query: 157 IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS 216
           IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS 180

Query: 217 VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD 263
           VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD 226

[Close]

BLAST of Carg28038 vs. NCBI nr
Match: XP_022999311.1 (cell division topological specificity factor homolog, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 424.9 bits (1091), Expect = 5.2e-115
Identity = 222/226 (98.23%), Postives = 223/226 (98.67%), Query Frame = 0


Query: 37  MAVSGDLRVSATLCSHHPHPRRTSFPSSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRR 96
           MAVSGDLRVSATLCSHHPHP RTSFPSSKVEFSGFSSGGL SHDVALKW NMAIDSRNRR
Sbjct: 1   MAVSGDLRVSATLCSHHPHPHRTSFPSSKVEFSGFSSGGLISHDVALKWHNMAIDSRNRR 60

Query: 97  GISQITTRSSESHEMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL 156
           GISQITTRSSES+EMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL
Sbjct: 61  GISQITTRSSESYEMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL 120

Query: 157 IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS 216
           IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS 180

Query: 217 VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD 263
           VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD 226

[Close]

BLAST of Carg28038 vs. ExPASy Swiss-Prot
Match: Q9C4Z7 (Cell division topological specificity factor homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MINE1 PE=1 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.8e-68
Identity = 140/227 (61.67%), Postives = 176/227 (77.53%), Query Frame = 0


Query: 40  SGDLRVSATLCS--HHPHPRRTSFP--SSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNR 99
           SG LR+SATL S  HH H  R S P  SSKV+F+GF S G++S +       +AI   N 
Sbjct: 5   SGTLRISATLVSPYHHHHRNRLSLPSSSSKVDFTGFISNGVNSLETQKCTPGLAISRENT 64

Query: 100 RGISQITTRSSESHEMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNA 159
           RG  ++  R++  +E+S   + QE E+FL NAINM FF+RLNLAW+I+FP+  S+R+SNA
Sbjct: 65  RGQVKVLARNTGDYELSPSPAEQEIESFLYNAINMGFFDRLNLAWKIIFPSHASRRSSNA 124

Query: 160 LIAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIY 219
            IAKQRLKMILF+DRC VSDEAKRKIV+NI+ ALSDFVEIES++KV+L++STD DLGTIY
Sbjct: 125 RIAKQRLKMILFSDRCDVSDEAKRKIVNNIIHALSDFVEIESEEKVQLNVSTDGDLGTIY 184

Query: 220 SVTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD 263
           SVTVPVRRVK EYQ+ DE+ TITN+EYKD  +  GSVDVRFDF++P+
Sbjct: 185 SVTVPVRRVKPEYQDVDEAGTITNVEYKDTRD--GSVDVRFDFYVPE 229

[Close]

BLAST of Carg28038 vs. ExPASy Swiss-Prot
Match: Q31PU2 (Cell division topological specificity factor OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=minE PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 8.6e-04
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 143 LFPTPTSKRNSNALIAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVE 202
           LFP   + R++     KQRLK++L  DR  +S E  +K+   I++ +S +VE++S + +E
Sbjct: 9   LFPRQQASRDT----VKQRLKLVLAHDRADLSPELLQKMRQEILEVVSRYVELDS-EGME 68

Query: 203 LSMSTDSDLGTIYSVTVPVRRVK 226
           LS+  D  + T     +P+RRVK
Sbjct: 69  LSLENDQRV-TALVANLPIRRVK 85

[Close]

BLAST of Carg28038 vs. ExPASy Swiss-Prot
Match: Q5N4D6 (Cell division topological specificity factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=minE PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 8.6e-04
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 143 LFPTPTSKRNSNALIAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVE 202
           LFP   + R++     KQRLK++L  DR  +S E  +K+   I++ +S +VE++S + +E
Sbjct: 9   LFPRQQASRDT----VKQRLKLVLAHDRADLSPELLQKMRQEILEVVSRYVELDS-EGME 68

Query: 203 LSMSTDSDLGTIYSVTVPVRRVK 226
           LS+  D  + T     +P+RRVK
Sbjct: 69  LSLENDQRV-TALVANLPIRRVK 85

[Close]

BLAST of Carg28038 vs. ExPASy TrEMBL
Match: A0A6J1G2G6 (cell division topological specificity factor homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111450227 PE=3 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 1.3e-116
Identity = 224/226 (99.12%), Postives = 225/226 (99.56%), Query Frame = 0


Query: 37  MAVSGDLRVSATLCSHHPHPRRTSFPSSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRR 96
           MAVSGDLRVSATLCSHHPHPRRTSFPS KVEFSGFSSGGLSSHDVALKWRNMAIDSRNRR
Sbjct: 1   MAVSGDLRVSATLCSHHPHPRRTSFPSPKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRR 60

Query: 97  GISQITTRSSESHEMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL 156
           GISQITTRSSES+EMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL
Sbjct: 61  GISQITTRSSESYEMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL 120

Query: 157 IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS 216
           IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS 180

Query: 217 VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD 263
           VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD 226

[Close]

BLAST of Carg28038 vs. ExPASy TrEMBL
Match: A0A6J1KCP8 (cell division topological specificity factor homolog, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111493725 PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.5e-115
Identity = 222/226 (98.23%), Postives = 223/226 (98.67%), Query Frame = 0


Query: 37  MAVSGDLRVSATLCSHHPHPRRTSFPSSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRR 96
           MAVSGDLRVSATLCSHHPHP RTSFPSSKVEFSGFSSGGL SHDVALKW NMAIDSRNRR
Sbjct: 1   MAVSGDLRVSATLCSHHPHPHRTSFPSSKVEFSGFSSGGLISHDVALKWHNMAIDSRNRR 60

Query: 97  GISQITTRSSESHEMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL 156
           GISQITTRSSES+EMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL
Sbjct: 61  GISQITTRSSESYEMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL 120

Query: 157 IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS 216
           IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS 180

Query: 217 VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD 263
           VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD 226

[Close]

BLAST of Carg28038 vs. ExPASy TrEMBL
Match: A0A0A0KQJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G469010 PE=3 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 6.6e-108
Identity = 210/226 (92.92%), Postives = 216/226 (95.58%), Query Frame = 0


Query: 37  MAVSGDLRVSATLCSHHPHPRRTSFPSSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRR 96
           MAVSGDLRVSATLCSHH HP R SFPSSKVEFSGFS GG SSH+VALKWRN AIDSRNRR
Sbjct: 1   MAVSGDLRVSATLCSHHSHPLRPSFPSSKVEFSGFSCGGPSSHEVALKWRNTAIDSRNRR 60

Query: 97  GISQITTRSSESHEMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL 156
           GISQITT SSES E+SSKTSSQEAETFLLNAINMNFFERLNLAWRILFP+P SKRNSNAL
Sbjct: 61  GISQITTGSSESFELSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPSPASKRNSNAL 120

Query: 157 IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS 216
           IAKQRLKMILFADRCAVSDEAKRKIVSNIV+ALSDFVEIESKDKV+LSMSTDSDLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVQLSMSTDSDLGTIYS 180

Query: 217 VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD 263
           VTVPVRRVKAEYQEADES TITNIEYKDNGET+GSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKAEYQEADESGTITNIEYKDNGETSGSVDVRFDFFIPD 226

[Close]

BLAST of Carg28038 vs. ExPASy TrEMBL
Match: A0A1S3CPL3 (cell division topological specificity factor homolog, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103503356 PE=3 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.5e-107
Identity = 209/226 (92.48%), Postives = 215/226 (95.13%), Query Frame = 0


Query: 37  MAVSGDLRVSATLCSHHPHPRRTSFPSSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRR 96
           MAVSGDLRVSATLCSHH HP R SFPSSKVEFSGFS GG SSH+VALKWRN AID RNRR
Sbjct: 1   MAVSGDLRVSATLCSHHSHPLRPSFPSSKVEFSGFSCGGPSSHEVALKWRNTAIDRRNRR 60

Query: 97  GISQITTRSSESHEMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL 156
           GISQITT SSES E+SSKTSSQEAETFLLNAINMNFFERLNLAWRILFP+P SKRNSNAL
Sbjct: 61  GISQITTGSSESFELSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPSPASKRNSNAL 120

Query: 157 IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS 216
           IAKQRLKMILFADRCAVSDEAKRKIVSNIV+ALSDFVEIESKDKV+LSMSTDSDLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVQLSMSTDSDLGTIYS 180

Query: 217 VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD 263
           VTVPVRRVKAEYQEADES TITNIEYKDNGET+GSVDVRFDFFIPD
Sbjct: 181 VTVPVRRVKAEYQEADESGTITNIEYKDNGETSGSVDVRFDFFIPD 226

[Close]

BLAST of Carg28038 vs. ExPASy TrEMBL
Match: A0A6J1E0P8 (cell division topological specificity factor homolog, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024862 PE=3 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 2.8e-106
Identity = 205/226 (90.71%), Postives = 215/226 (95.13%), Query Frame = 0


Query: 37  MAVSGDLRVSATLCSHHPHPRRTSFPSSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNRR 96
           MAVSGDL VSATLCSHHP P RTSFPSSKVEFSGFSSGG SSH+V LKW NMAIDSRN+R
Sbjct: 1   MAVSGDLGVSATLCSHHPQPLRTSFPSSKVEFSGFSSGGPSSHEVVLKWHNMAIDSRNKR 60

Query: 97  GISQITTRSSESHEMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNAL 156
           G+SQITT SS S+E+SSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTP SKRNSNAL
Sbjct: 61  GVSQITTGSSGSYELSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPASKRNSNAL 120

Query: 157 IAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIYS 216
           IAKQRLKMILFADRCAVSDEAKRKIVSNIV+ALSDFVEIESKDKV+LSMSTDSDLGTIYS
Sbjct: 121 IAKQRLKMILFADRCAVSDEAKRKIVSNIVRALSDFVEIESKDKVQLSMSTDSDLGTIYS 180

Query: 217 VTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD 263
           +TVPVRRVKAEYQEADES TITNIEYKD GET+GSVDVRFDFFIP+
Sbjct: 181 ITVPVRRVKAEYQEADESGTITNIEYKDKGETSGSVDVRFDFFIPE 226

[Close]

BLAST of Carg28038 vs. TAIR 10
Match: AT1G69390.1 (homologue of bacterial MinE 1 )

HSP 1 Score: 259.6 bits (662), Expect = 2.7e-69
Identity = 140/227 (61.67%), Postives = 176/227 (77.53%), Query Frame = 0


Query: 40  SGDLRVSATLCS--HHPHPRRTSFP--SSKVEFSGFSSGGLSSHDVALKWRNMAIDSRNR 99
           SG LR+SATL S  HH H  R S P  SSKV+F+GF S G++S +       +AI   N 
Sbjct: 5   SGTLRISATLVSPYHHHHRNRLSLPSSSSKVDFTGFISNGVNSLETQKCTPGLAISRENT 64

Query: 100 RGISQITTRSSESHEMSSKTSSQEAETFLLNAINMNFFERLNLAWRILFPTPTSKRNSNA 159
           RG  ++  R++  +E+S   + QE E+FL NAINM FF+RLNLAW+I+FP+  S+R+SNA
Sbjct: 65  RGQVKVLARNTGDYELSPSPAEQEIESFLYNAINMGFFDRLNLAWKIIFPSHASRRSSNA 124

Query: 160 LIAKQRLKMILFADRCAVSDEAKRKIVSNIVQALSDFVEIESKDKVELSMSTDSDLGTIY 219
            IAKQRLKMILF+DRC VSDEAKRKIV+NI+ ALSDFVEIES++KV+L++STD DLGTIY
Sbjct: 125 RIAKQRLKMILFSDRCDVSDEAKRKIVNNIIHALSDFVEIESEEKVQLNVSTDGDLGTIY 184

Query: 220 SVTVPVRRVKAEYQEADESATITNIEYKDNGETTGSVDVRFDFFIPD 263
           SVTVPVRRVK EYQ+ DE+ TITN+EYKD  +  GSVDVRFDF++P+
Sbjct: 185 SVTVPVRRVKPEYQDVDEAGTITNVEYKDTRD--GSVDVRFDFYVPE 229

The following BLAST results are available for this feature:

BLAST of Carg28038 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029977.1	1.8e-139	100.00	Cell division topological specificity factor-like, chloroplastic, partial [Cucur...	[more]
KAG6599013.1	8.8e-139	99.62	Cell division topological specificity factor-like, chloroplastic, partial [Cucur...	[more]
XP_023520464.1	9.4e-117	99.12	cell division topological specificity factor homolog, chloroplastic-like [Cucurb...	[more]
XP_022946006.1	2.7e-116	99.12	cell division topological specificity factor homolog, chloroplastic-like [Cucurb...	[more]
XP_022999311.1	5.2e-115	98.23	cell division topological specificity factor homolog, chloroplastic-like [Cucurb...	[more]

BLAST of Carg28038 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C4Z7	3.8e-68	61.67	Cell division topological specificity factor homolog, chloroplastic OS=Arabidops...	[more]
Q31PU2	8.6e-04	36.14	Cell division topological specificity factor OS=Synechococcus elongatus (strain ...	[more]
Q5N4D6	8.6e-04	36.14	Cell division topological specificity factor OS=Synechococcus sp. (strain ATCC 2...	[more]

BLAST of Carg28038 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2G6	1.3e-116	99.12	cell division topological specificity factor homolog, chloroplastic-like OS=Cucu...	[more]
A0A6J1KCP8	2.5e-115	98.23	cell division topological specificity factor homolog, chloroplastic-like OS=Cucu...	[more]
A0A0A0KQJ9	6.6e-108	92.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G469010 PE=3 SV=1	[more]
A0A1S3CPL3	2.5e-107	92.48	cell division topological specificity factor homolog, chloroplastic-like OS=Cucu...	[more]
A0A6J1E0P8	2.8e-106	90.71	cell division topological specificity factor homolog, chloroplastic-like isoform...	[more]

BLAST of Carg28038 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G69390.1	2.7e-69	61.67	homologue of bacterial MinE 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005527	Cell division topological specificity factor MinE	PFAM	PF03776	MinE	coord: 157..222 e-value: 4.2E-13 score: 49.1
IPR005527	Cell division topological specificity factor MinE	PANTHER	PTHR33404	CELL DIVISION TOPOLOGICAL SPECIFICITY FACTOR HOMOLOG, CHLOROPLASTIC	coord: 37..262
IPR036707	Cell division topological specificity factor MinE superfamily	GENE3D	3.30.1070.10	Cell division topological specificity factor MinE	coord: 140..221 e-value: 5.5E-7 score: 31.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..115
None	No IPR available	PANTHER	PTHR33404:SF9	BNAC06G30560D PROTEIN	coord: 37..262

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28038-RA	Carg28038-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010020	chloroplast fission
biological_process	GO:0032955	regulation of division septum assembly
biological_process	GO:0051301	cell division