Carg28032 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTCAAAGTTACATATCAATCAATCAATCCATAATATCCTTTACGATTAGTTTATAATTCTCAGTACTGACTACGATACTTGCTCGATCCAAGTTCTTGTCCTTCACCGGATGCGATCTATTAGCATCCCTGTTTGCGCCGAAGATTACAATCTCTCTTCCACTCTGCAATTTCCATGGCGATTCACAAGACCCAGAAGGCAAAACCCAAACCCAGATCCCCATTCCTCTTCTTCTTCGTTGCCCTCGCCGTCATTGCGTTTCTTTTCCTATTTTCCTCTCTGATTTCCACTATTGGGGTTTCTTCTTCTTTTCCATCATCAAATTCGATTCGTGAAATCTTCAGATTCAAGAATTTGAACCAGAAACAGAGACGTAATCGGCACGTTTTTAGTACGAACGACAAGTTCTTGTACTGGGGCAACAGAATCGACTGTCCTGGGAAGCATTGCGAGTCTTGCGAGGGTTTGGGTCACCAGGAGTCCAGCTTGAGGTGCGCCCTTGAGGAAGCCATGTTCCTCCAGAGGTAATTTTCATGAAGTTTTTCTGATTTCTGGGGCTTAATCTTTACATGAACATGTTTTCTCCTAGTTTAATTTGGTGGATTGGCATGTTAGGATTTCTGTGTGAAAGGGGTTTGGAATTGGATTAGCAGTAACTCATCAGCACTGTAGTGGTTCTATCATCACTAAACGTAGAATTATCCGTTGAGGATGGTTGGGAGGGAGTCACACGTTGGCTAATACATCTCTAGATGAAAGCCATGTGGACAATAGCATACCATTGTGGAGATACTTGGTATCAGAGTCATGCCTTTAACTTAACCATGTCAATAGAATCCTCAAATGTCGAACCAAGAAGTTGTGAGCCTTAATTAAGGGGAGGTTGTTCGAGGACTCTATAGGCCTCAAGGGAGGCTCTATGGTGTACTTCGTTCGAGGGGAGGACTGTGGAGATTCGTGATTCCTAACATTATCATATCTTGAAACTCACGAGTTCAAGAAACTTCTGTTGGCCCCTTGCTTGATCTTTTATGCTGTGTTATTGGTATGAGGTGCCATTTAGTTTGTCTCAGCTCTTTGTAATGGTAATGGATTGGTCCAACGCCGTTAAGTTCAGCATAATTTATTGGTAGAATGCTTTTGCATAACCTACTTAGACAATTTACTTTACTTTCTTTTTTGGTGCAGAGTATTTTGA ATTCAAAGTTACATATCAATCAATCAATCCATAATATCCTTTACGATTAGTTTATAATTCTCAGTACTGACTACGATACTTGCTCGATCCAAGTTCTTGTCCTTCACCGGATGCGATCTATTAGCATCCCTGTTTGCGCCGAAGATTACAATCTCTCTTCCACTCTGCAATTTCCATGGCGATTCACAAGACCCAGAAGGCAAAACCCAAACCCAGATCCCCATTCCTCTTCTTCTTCGTTGCCCTCGCCGTCATTGCGTTTCTTTTCCTATTTTCCTCTCTGATTTCCACTATTGGGGTTTCTTCTTCTTTTCCATCATCAAATTCGATTCGTGAAATCTTCAGATTCAAGAATTTGAACCAGAAACAGAGACGTAATCGGCACGTTTTTAGTACGAACGACAAGTTCTTGTACTGGGGCAACAGAATCGACTGTCCTGGGAAGCATTGCGAGTCTTGCGAGGGTTTGGGTCACCAGGAGTCCAGCTTGAGGTGCGCCCTTGAGGAAGCCATGTTCCTCCAGAGAGTATTTTGA ATGGCGATTCACAAGACCCAGAAGGCAAAACCCAAACCCAGATCCCCATTCCTCTTCTTCTTCGTTGCCCTCGCCGTCATTGCGTTTCTTTTCCTATTTTCCTCTCTGATTTCCACTATTGGGGTTTCTTCTTCTTTTCCATCATCAAATTCGATTCGTGAAATCTTCAGATTCAAGAATTTGAACCAGAAACAGAGACGTAATCGGCACGTTTTTAGTACGAACGACAAGTTCTTGTACTGGGGCAACAGAATCGACTGTCCTGGGAAGCATTGCGAGTCTTGCGAGGGTTTGGGTCACCAGGAGTCCAGCTTGAGGTGCGCCCTTGAGGAAGCCATGTTCCTCCAGAGAGTATTTTGA MAIHKTQKAKPKPRSPFLFFFVALAVIAFLFLFSSLISTIGVSSSFPSSNSIREIFRFKNLNQKQRRNRHVFSTNDKFLYWGNRIDCPGKHCESCEGLGHQESSLRCALEEAMFLQRVF Homology
BLAST of Carg28032 vs. NCBI nr
Match: XP_022932889.1 (uncharacterized protein LOC111439414 isoform X1 [Cucurbita moschata]) HSP 1 Score: 239.2 bits (609), Expect = 1.8e-59 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
BLAST of Carg28032 vs. NCBI nr
Match: KAG7033579.1 (hypothetical protein SDJN02_03303 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 239.2 bits (609), Expect = 1.8e-59 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
BLAST of Carg28032 vs. NCBI nr
Match: XP_022967807.1 (uncharacterized protein LOC111467213 isoform X1 [Cucurbita maxima]) HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58 Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of Carg28032 vs. NCBI nr
Match: KAG7033584.1 (hypothetical protein SDJN02_03308 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 231.9 bits (590), Expect = 2.9e-57 Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 0
BLAST of Carg28032 vs. NCBI nr
Match: XP_023545162.1 (uncharacterized protein LOC111804548 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 231.9 bits (590), Expect = 2.9e-57 Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 0
BLAST of Carg28032 vs. ExPASy TrEMBL
Match: A0A6J1EY95 (uncharacterized protein LOC111439414 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439414 PE=4 SV=1) HSP 1 Score: 239.2 bits (609), Expect = 8.9e-60 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
BLAST of Carg28032 vs. ExPASy TrEMBL
Match: A0A6J1HRU4 (O-fucosyltransferase family protein OS=Cucurbita maxima OX=3661 GN=LOC111467213 PE=3 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 5.7e-59 Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of Carg28032 vs. ExPASy TrEMBL
Match: A0A0A0L0X3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G430860 PE=4 SV=1) HSP 1 Score: 201.8 bits (512), Expect = 1.6e-48 Identity = 101/119 (84.87%), Postives = 107/119 (89.92%), Query Frame = 0
BLAST of Carg28032 vs. ExPASy TrEMBL
Match: A0A5D3DWC1 (O-fucosyltransferase family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00060 PE=3 SV=1) HSP 1 Score: 199.5 bits (506), Expect = 7.8e-48 Identity = 101/119 (84.87%), Postives = 106/119 (89.08%), Query Frame = 0
BLAST of Carg28032 vs. ExPASy TrEMBL
Match: A0A1S3C1H9 (O-fucosyltransferase family protein OS=Cucumis melo OX=3656 GN=LOC103495824 PE=3 SV=1) HSP 1 Score: 199.5 bits (506), Expect = 7.8e-48 Identity = 101/119 (84.87%), Postives = 106/119 (89.08%), Query Frame = 0
BLAST of Carg28032 vs. TAIR 10
Match: AT2G41150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56750.1); Has 57 Blast hits to 57 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). ) HSP 1 Score: 104.0 bits (258), Expect = 8.6e-23 Identity = 61/115 (53.04%), Postives = 74/115 (64.35%), Query Frame = 0
BLAST of Carg28032 vs. TAIR 10
Match: AT2G41150.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56750.1); Has 127 Blast hits to 127 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 104.0 bits (258), Expect = 8.6e-23 Identity = 61/115 (53.04%), Postives = 74/115 (64.35%), Query Frame = 0
BLAST of Carg28032 vs. TAIR 10
Match: AT3G56750.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41150.2); Has 128 Blast hits to 128 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). ) HSP 1 Score: 102.1 bits (253), Expect = 3.3e-22 Identity = 58/115 (50.43%), Postives = 73/115 (63.48%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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