Carg28018 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg28018
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationCarg_Chr13: 4660142 .. 4661068 (+)
RNA-Seq ExpressionCarg28018
SyntenyCarg28018
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAAACCACAAGACATAATCCCCTTCTACGCCGCTCTCCTCCAAGCATGCTCCTCCACCAAGAACCACCGCACCCTCAAGCAAATCCACGCTCTAACCATCCGACTCGGAATCTCTCACCATGATTTCATTCGAACCAAGCTTGCCTCCACCTACGCCGCCTGCCACCATCTCCCACAAGCCACTACCATCTTCTCCTTCGCCACTCGCCGCCCCACCTTCCTCTTTAATGCCCTCATCAGAGCCCACTCCTCTCTGCGTCTCTTCTCCCAATCACTCTCGATTTTCCGCCACATGCTTCTTTCTGGAAAGCCCATTGACCGTCATACTTTACCGCCGGTGATCAAGTCATGTACGGGGCTCTCGTCCTTGCGCCTTGGCCGGCAGGTTCATGGGGCTGTTGTGATTAATGGGTTCTCCACCGATTTGCCGAATTTGAATGCGTTGATTACGATGTATGGCAAGTGCGGGGACTTGGGTGTTGCACGGAAAGTGTTCGATGGAATGCCTGAGAGAAATGAGGTGTCGTGGTCTGCGTTGATGGCGGGTTATGGTGTTCATGGGATGTTTAGTGAGGTGTTTGGATTGTTTGAGAGGATGGTGGAAGAGGGACAAAAGCCGGATGAGCTCACTTTTACAGCTCTTCTCACGGCATGTAGCCATGGAGGGTTGATTGAGAGGGGGAAGGAGTATTTTGGTATGATGGAAATGGGGTTCGATTTGAGGCCTGGGTTGGAGCATTACACCTGCATGGTGGATTTGCTGGGAAGGGTGGGACAAGTGGAAGAAGCAGAGAAGTTGATCATGGAGATGGAGATTGAGCCTGATGAGGCATTGTGGGGCGCCCTGCTGAGTGCTTGTAGGATTCATGGGAAAGCCGAGGTGGCTGATAGGGTGCAAACACGGTTTATGAAGCAACACTGA

mRNA sequence

ATGCCCAAACCACAAGACATAATCCCCTTCTACGCCGCTCTCCTCCAAGCATGCTCCTCCACCAAGAACCACCGCACCCTCAAGCAAATCCACGCTCTAACCATCCGACTCGGAATCTCTCACCATGATTTCATTCGAACCAAGCTTGCCTCCACCTACGCCGCCTGCCACCATCTCCCACAAGCCACTACCATCTTCTCCTTCGCCACTCGCCGCCCCACCTTCCTCTTTAATGCCCTCATCAGAGCCCACTCCTCTCTGCGTCTCTTCTCCCAATCACTCTCGATTTTCCGCCACATGCTTCTTTCTGGAAAGCCCATTGACCGTCATACTTTACCGCCGGTGATCAAGTCATGTACGGGGCTCTCGTCCTTGCGCCTTGGCCGGCAGGTTCATGGGGCTGTTGTGATTAATGGGTTCTCCACCGATTTGCCGAATTTGAATGCGTTGATTACGATGTATGGCAAGTGCGGGGACTTGGGTGTTGCACGGAAAGTGTTCGATGGAATGCCTGAGAGAAATGAGGTGTCGTGGTCTGCGTTGATGGCGGGTTATGGTGTTCATGGGATGTTTAGTGAGGTGTTTGGATTGTTTGAGAGGATGGTGGAAGAGGGACAAAAGCCGGATGAGCTCACTTTTACAGCTCTTCTCACGGCATGTAGCCATGGAGGGTTGATTGAGAGGGGGAAGGAGTATTTTGGTATGATGGAAATGGGGTTCGATTTGAGGCCTGGGTTGGAGCATTACACCTGCATGGTGGATTTGCTGGGAAGGGTGGGACAAGTGGAAGAAGCAGAGAAGTTGATCATGGAGATGGAGATTGAGCCTGATGAGGCATTGTGGGGCGCCCTGCTGAGTGCTTGTAGGATTCATGGGAAAGCCGAGGTGGCTGATAGGGTGCAAACACGGTTTATGAAGCAACACTGA

Coding sequence (CDS)

ATGCCCAAACCACAAGACATAATCCCCTTCTACGCCGCTCTCCTCCAAGCATGCTCCTCCACCAAGAACCACCGCACCCTCAAGCAAATCCACGCTCTAACCATCCGACTCGGAATCTCTCACCATGATTTCATTCGAACCAAGCTTGCCTCCACCTACGCCGCCTGCCACCATCTCCCACAAGCCACTACCATCTTCTCCTTCGCCACTCGCCGCCCCACCTTCCTCTTTAATGCCCTCATCAGAGCCCACTCCTCTCTGCGTCTCTTCTCCCAATCACTCTCGATTTTCCGCCACATGCTTCTTTCTGGAAAGCCCATTGACCGTCATACTTTACCGCCGGTGATCAAGTCATGTACGGGGCTCTCGTCCTTGCGCCTTGGCCGGCAGGTTCATGGGGCTGTTGTGATTAATGGGTTCTCCACCGATTTGCCGAATTTGAATGCGTTGATTACGATGTATGGCAAGTGCGGGGACTTGGGTGTTGCACGGAAAGTGTTCGATGGAATGCCTGAGAGAAATGAGGTGTCGTGGTCTGCGTTGATGGCGGGTTATGGTGTTCATGGGATGTTTAGTGAGGTGTTTGGATTGTTTGAGAGGATGGTGGAAGAGGGACAAAAGCCGGATGAGCTCACTTTTACAGCTCTTCTCACGGCATGTAGCCATGGAGGGTTGATTGAGAGGGGGAAGGAGTATTTTGGTATGATGGAAATGGGGTTCGATTTGAGGCCTGGGTTGGAGCATTACACCTGCATGGTGGATTTGCTGGGAAGGGTGGGACAAGTGGAAGAAGCAGAGAAGTTGATCATGGAGATGGAGATTGAGCCTGATGAGGCATTGTGGGGCGCCCTGCTGAGTGCTTGTAGGATTCATGGGAAAGCCGAGGTGGCTGATAGGGTGCAAACACGGTTTATGAAGCAACACTGA

Protein sequence

MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGFDLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRVQTRFMKQH
Homology
[Close]
BLAST of Carg28018 vs. NCBI nr
Match: KAG7019344.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 628.2 bits (1619), Expect = 3.6e-176
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCT 120
           QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF 240
           LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF
Sbjct: 181 LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRV 300
           DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRV
Sbjct: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRV 300

Query: 301 QTRFMKQH 309
           QTRFMKQH
Sbjct: 301 QTRFMKQH 308

[Close]
BLAST of Carg28018 vs. NCBI nr
Match: KAG6583697.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 626.7 bits (1615), Expect = 1.1e-175
Identity = 307/308 (99.68%), Postives = 308/308 (100.00%), Query Frame = 0 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCT 120
           QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF 240
           LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF
Sbjct: 181 LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRV 300
           DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRV
Sbjct: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRV 300

Query: 301 QTRFMKQH 309
           QTRF+KQH
Sbjct: 301 QTRFIKQH 308

[Close]
BLAST of Carg28018 vs. NCBI nr
Match: XP_023520705.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 621.7 bits (1602), Expect = 3.4e-174
Identity = 303/308 (98.38%), Postives = 306/308 (99.35%), Query Frame = 0 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCT 120
           QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHML+SGKPIDRHTLPPV+KSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF 240
           LMAGYGVHGMF EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMM+MGF
Sbjct: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRV 300
           DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALL ACRIHGKAEVADRV
Sbjct: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300

Query: 301 QTRFMKQH 309
           QTRFMKQH
Sbjct: 301 QTRFMKQH 308

[Close]
BLAST of Carg28018 vs. NCBI nr
Match: XP_022927399.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 620.9 bits (1600), Expect = 5.8e-174
Identity = 304/308 (98.70%), Postives = 305/308 (99.03%), Query Frame = 0 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCT 120
           QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFR MLLSGKPIDRHTLPPVIKSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF 240
           LMAGYGVHGMF EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMM+MGF
Sbjct: 181 LMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRV 300
           DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGK EVADRV
Sbjct: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV 300

Query: 301 QTRFMKQH 309
           QTRFMKQH
Sbjct: 301 QTRFMKQH 308

[Close]
BLAST of Carg28018 vs. NCBI nr
Match: XP_022973156.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 608.2 bits (1567), Expect = 3.9e-170
Identity = 299/310 (96.45%), Postives = 304/310 (98.06%), Query Frame = 0 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKPQDIIPFYAALLQACSSTKNH TLKQIHALTIRLGISHHDFIRTKLASTYAAC HLP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCT 120
           QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPV+KSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHG VVINGFSTDLPNLNALITMYGKCGDLG+ARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF 240
           LMAGYGVHGMF EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMM+MGF
Sbjct: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLI--MEMEIEPDEALWGALLSACRIHGKAEVAD 300
           +L+PGLEHYTCMVDLLGRVGQVEEAEKLI  MEMEIEPDEALWGALLSACRIHGKAEVAD
Sbjct: 241 NLKPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVAD 300

Query: 301 RVQTRFMKQH 309
           RVQTRFMKQH
Sbjct: 301 RVQTRFMKQH 310

[Close]
BLAST of Carg28018 vs. ExPASy Swiss-Prot
Match: Q9STF3 (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 2.1e-57
Identity = 115/299 (38.46%), Postives = 175/299 (58.53%), Query Frame = 0 

Query: 11  YAALLQAC---SSTKNHRTL-KQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIF 70
           Y  +L+AC     T NH    K+IHA   R G S H +I T L   YA    +  A+ +F
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 71  SFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRH--TLPPVIKSCTGLSS 130
                R    ++A+I  ++      ++L  FR M+   K    +  T+  V+++C  L++
Sbjct: 241 GGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA 300

Query: 131 LRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAG 190
           L  G+ +HG ++  G  + LP ++AL+TMYG+CG L V ++VFD M +R+ VSW++L++ 
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360

Query: 191 YGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGFDLRP 250
           YGVHG   +   +FE M+  G  P  +TF ++L ACSH GL+E GK  F  M     ++P
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420

Query: 251 GLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRVQTR 304
            +EHY CMVDLLGR  +++EA K++ +M  EP   +WG+LL +CRIHG  E+A+R   R
Sbjct: 421 QIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

[Close]
BLAST of Carg28018 vs. ExPASy Swiss-Prot
Match: Q9LND4 (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E61 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 2.5e-55
Identity = 104/293 (35.49%), Postives = 167/293 (57.00%), Query Frame = 0 

Query: 14  LLQACSSTKNHRTLKQIHALTIRLG-ISHHDFIRTKLASTYAACHHLPQATTIFSFATRR 73
           L++AC +    +  K +H ++IR   I   D+++  +   Y  C  L  A  +F  +  R
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275

Query: 74  PTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVH 133
              ++  LI   +      ++  +FR ML      ++ TL  ++ SC+ L SLR G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335

Query: 134 GAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFS 193
           G ++ NG   D  N  + I MY +CG++ +AR VFD MPERN +SWS+++  +G++G+F 
Sbjct: 336 GYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFE 395

Query: 194 EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGFDLRPGLEHYTCM 253
           E    F +M  +   P+ +TF +LL+ACSH G ++ G + F  M   + + P  EHY CM
Sbjct: 396 EALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACM 455

Query: 254 VDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRVQTRFM 306
           VDLLGR G++ EA+  I  M ++P  + WGALLSACRIH + ++A  +  + +
Sbjct: 456 VDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLL 508

[Close]
BLAST of Carg28018 vs. ExPASy Swiss-Prot
Match: Q0WN60 (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H8 PE=2 SV=2)

HSP 1 Score: 210.7 bits (535), Expect = 2.4e-53
Identity = 106/295 (35.93%), Postives = 165/295 (55.93%), Query Frame = 0 

Query: 13  ALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRR 72
           +LL ACS  K+ R  K++H   IR  +    F+   + S Y  C  L     +F     +
Sbjct: 501 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDK 560

Query: 73  PTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVH 132
               +N +I  +       ++L +FR M+L G  +   ++ PV  +C+ L SLRLGR+ H
Sbjct: 561 SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAH 620

Query: 133 GAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFS 192
              + +    D     +LI MY K G +  + KVF+G+ E++  SW+A++ GYG+HG+  
Sbjct: 621 AYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAK 680

Query: 193 EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGFDLRPGLEHYTCM 252
           E   LFE M   G  PD+LTF  +LTAC+H GLI  G  Y   M+  F L+P L+HY C+
Sbjct: 681 EAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACV 740

Query: 253 VDLLGRVGQVEEAEKLIM-EMEIEPDEALWGALLSACRIHGKAEVADRVQTRFMK 307
           +D+LGR GQ+++A +++  EM  E D  +W +LLS+CRIH   E+ ++V  +  +
Sbjct: 741 IDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFE 795

[Close]
BLAST of Carg28018 vs. ExPASy Swiss-Prot
Match: P93005 (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 3.1e-53
Identity = 110/283 (38.87%), Postives = 160/283 (56.54%), Query Frame = 0 

Query: 14  LLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRP 73
           +L ACS        KQ+H+  ++LG   H F  T L   YA    L  A   F     R 
Sbjct: 328 VLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERD 387

Query: 74  TFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHG 133
             L+ +LI  +       ++L ++R M  +G   +  T+  V+K+C+ L++L LG+QVHG
Sbjct: 388 VALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHG 447

Query: 134 AVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFSE 193
             + +GF  ++P  +AL TMY KCG L     VF   P ++ VSW+A+++G   +G   E
Sbjct: 448 HTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDE 507

Query: 194 VFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGFDLRPGLEHYTCMV 253
              LFE M+ EG +PD++TF  +++ACSH G +ERG  YF MM     L P ++HY CMV
Sbjct: 508 ALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567

Query: 254 DLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEV 297
           DLL R GQ++EA++ I    I+    LW  LLSAC+ HGK E+
Sbjct: 568 DLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCEL 610

[Close]
BLAST of Carg28018 vs. ExPASy Swiss-Prot
Match: P0C8Q2 (Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 4.0e-53
Identity = 108/299 (36.12%), Postives = 168/299 (56.19%), Query Frame = 0 

Query: 5   QDIIPFYAALLQACSSTKNHRTLKQ---IHALTIRLGISHHDFIRTKLASTYAACHHLPQ 64
           ++  P  +  +   +S +N  TL Q   IH+  I LG            S Y+       
Sbjct: 250 EEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCS 309

Query: 65  ATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCTG 124
           A  +F   T R    +  +I  ++      ++L++F  M+ SG+  D  TL  +I  C  
Sbjct: 310 ARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK 369

Query: 125 LSSLRLGRQVHGAVVINGFSTD-LPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 184
             SL  G+ +     I G   D +   NALI MY KCG +  AR +FD  PE+  V+W+ 
Sbjct: 370 FGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTT 429

Query: 185 LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF 244
           ++AGY ++G+F E   LF +M++   KP+ +TF A+L AC+H G +E+G EYF +M+  +
Sbjct: 430 MIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVY 489

Query: 245 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADR 300
           ++ PGL+HY+CMVDLLGR G++EEA +LI  M  +PD  +WGALL+AC+IH   ++A++
Sbjct: 490 NISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQ 548

[Close]
BLAST of Carg28018 vs. ExPASy TrEMBL
Match: A0A6J1EHW3 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111434233 PE=4 SV=1)

HSP 1 Score: 620.9 bits (1600), Expect = 2.8e-174
Identity = 304/308 (98.70%), Postives = 305/308 (99.03%), Query Frame = 0 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCT 120
           QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFR MLLSGKPIDRHTLPPVIKSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF 240
           LMAGYGVHGMF EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMM+MGF
Sbjct: 181 LMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRV 300
           DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGK EVADRV
Sbjct: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV 300

Query: 301 QTRFMKQH 309
           QTRFMKQH
Sbjct: 301 QTRFMKQH 308

[Close]
BLAST of Carg28018 vs. ExPASy TrEMBL
Match: A0A6J1I7X0 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111471666 PE=4 SV=1)

HSP 1 Score: 608.2 bits (1567), Expect = 1.9e-170
Identity = 299/310 (96.45%), Postives = 304/310 (98.06%), Query Frame = 0 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKPQDIIPFYAALLQACSSTKNH TLKQIHALTIRLGISHHDFIRTKLASTYAAC HLP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCT 120
           QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPV+KSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHG VVINGFSTDLPNLNALITMYGKCGDLG+ARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF 240
           LMAGYGVHGMF EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMM+MGF
Sbjct: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLI--MEMEIEPDEALWGALLSACRIHGKAEVAD 300
           +L+PGLEHYTCMVDLLGRVGQVEEAEKLI  MEMEIEPDEALWGALLSACRIHGKAEVAD
Sbjct: 241 NLKPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVAD 300

Query: 301 RVQTRFMKQH 309
           RVQTRFMKQH
Sbjct: 301 RVQTRFMKQH 310

[Close]
BLAST of Carg28018 vs. ExPASy TrEMBL
Match: A0A0A0K1F7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041310 PE=4 SV=1)

HSP 1 Score: 558.5 bits (1438), Expect = 1.7e-155
Identity = 274/307 (89.25%), Postives = 286/307 (93.16%), Query Frame = 0 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKP +IIPFYAALL ACSST N  TLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCT 120
           QATTIFSFATRRPT+LFN LIRAHSSLRLFSQSLSIFRHMLLSGK IDRHTLPPV+KSCT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGA++INGFS DLP+LNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF 240
           LMAGYGVHGMF EVF LFERMVEEGQKPDELTFT+LLTACSHGGLIE+GKEYFGMM M F
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRV 300
            LRPGL+HYTCMVDLLGR GQVEEAEKLIMEMEIEPDEALWGA+LSACRIHGK +VADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300

Query: 301 QTRFMKQ 308
           Q RF+KQ
Sbjct: 301 QKRFIKQ 307

[Close]
BLAST of Carg28018 vs. ExPASy TrEMBL
Match: A0A6J1CNN2 (pentatricopeptide repeat-containing protein At1g06140, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111012761 PE=4 SV=1)

HSP 1 Score: 545.8 bits (1405), Expect = 1.1e-151
Identity = 267/306 (87.25%), Postives = 280/306 (91.50%), Query Frame = 0 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MP  Q  +PFYAALL+ACSSTKN  +L+QIHALTIRL ISHHDFIRTKL S+YAAC  L 
Sbjct: 1   MPSSQGTVPFYAALLEACSSTKNLHSLEQIHALTIRLAISHHDFIRTKLVSSYAACAQLR 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCT 120
           QAT IFSFATRRPTFLFN LIRAHSSLRLF QSLSIFR MLLSGKPIDRHTLP V+KSCT
Sbjct: 61  QATAIFSFATRRPTFLFNTLIRAHSSLRLFPQSLSIFRRMLLSGKPIDRHTLPLVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHG VVINGFS DLPN NALITMYGKCGDLGVARKVFD MPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGVVVINGFSVDLPNSNALITMYGKCGDLGVARKVFDEMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF 240
           LMAGYGVHG F EVFGLFERMVE+GQKPD LTFTALLTACSHGGL+ERGKEYFGMM MGF
Sbjct: 181 LMAGYGVHGKFGEVFGLFERMVEDGQKPDGLTFTALLTACSHGGLVERGKEYFGMMRMGF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRV 300
           DLRPGLEHYTCMVD+LGR GQVEEAEKLIMEME+EPDEALWGALLSACRIHGKAEVADR+
Sbjct: 241 DLRPGLEHYTCMVDMLGRAGQVEEAEKLIMEMEVEPDEALWGALLSACRIHGKAEVADRL 300

Query: 301 QTRFMK 307
           Q RF++
Sbjct: 301 QKRFIE 306

[Close]
BLAST of Carg28018 vs. ExPASy TrEMBL
Match: A0A5A7UT42 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold786G00080 PE=4 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 1.7e-150
Identity = 265/307 (86.32%), Postives = 283/307 (92.18%), Query Frame = 0 

Query: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60
           MPKP +IIPFYAALL+ACSSTKN  TLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCT 120
           QA TIFSFATRRPT+LFNALIRAHSSLRLFSQSLSIFRHMLLSGK  DRHT P V+KSCT
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTFPLVLKSCT 120

Query: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGA++INGFS DLP+LNALITMY KCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYSKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF 240
           LMAGYGVHGMF EVF LFERMV+EGQ+PDELTFT+LLTACSHGGLIE+GKEYF  M M F
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVKEGQRPDELTFTSLLTACSHGGLIEKGKEYFRTMRMEF 240

Query: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRV 300
            LRPGL+HYTCMVDLLGR+GQVEEAEKLIMEME+EPDEALWGA+LSACRIHG+ +VADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRV 300

Query: 301 QTRFMKQ 308
           Q RF+KQ
Sbjct: 301 QKRFIKQ 307

[Close]
BLAST of Carg28018 vs. TAIR 10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 224.2 bits (570), Expect = 1.5e-58
Identity = 115/299 (38.46%), Postives = 175/299 (58.53%), Query Frame = 0 

Query: 11  YAALLQAC---SSTKNHRTL-KQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIF 70
           Y  +L+AC     T NH    K+IHA   R G S H +I T L   YA    +  A+ +F
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 71  SFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRH--TLPPVIKSCTGLSS 130
                R    ++A+I  ++      ++L  FR M+   K    +  T+  V+++C  L++
Sbjct: 241 GGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA 300

Query: 131 LRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAG 190
           L  G+ +HG ++  G  + LP ++AL+TMYG+CG L V ++VFD M +R+ VSW++L++ 
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360

Query: 191 YGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGFDLRP 250
           YGVHG   +   +FE M+  G  P  +TF ++L ACSH GL+E GK  F  M     ++P
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420

Query: 251 GLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRVQTR 304
            +EHY CMVDLLGR  +++EA K++ +M  EP   +WG+LL +CRIHG  E+A+R   R
Sbjct: 421 QIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

[Close]
BLAST of Carg28018 vs. TAIR 10
Match: AT1G06140.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 217.2 bits (552), Expect = 1.8e-56
Identity = 104/293 (35.49%), Postives = 167/293 (57.00%), Query Frame = 0 

Query: 14  LLQACSSTKNHRTLKQIHALTIRLG-ISHHDFIRTKLASTYAACHHLPQATTIFSFATRR 73
           L++AC +    +  K +H ++IR   I   D+++  +   Y  C  L  A  +F  +  R
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275

Query: 74  PTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVH 133
              ++  LI   +      ++  +FR ML      ++ TL  ++ SC+ L SLR G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335

Query: 134 GAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFS 193
           G ++ NG   D  N  + I MY +CG++ +AR VFD MPERN +SWS+++  +G++G+F 
Sbjct: 336 GYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFE 395

Query: 194 EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGFDLRPGLEHYTCM 253
           E    F +M  +   P+ +TF +LL+ACSH G ++ G + F  M   + + P  EHY CM
Sbjct: 396 EALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACM 455

Query: 254 VDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRVQTRFM 306
           VDLLGR G++ EA+  I  M ++P  + WGALLSACRIH + ++A  +  + +
Sbjct: 456 VDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLL 508

[Close]
BLAST of Carg28018 vs. TAIR 10
Match: AT1G18485.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 210.7 bits (535), Expect = 1.7e-54
Identity = 106/295 (35.93%), Postives = 165/295 (55.93%), Query Frame = 0 

Query: 13  ALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRR 72
           +LL ACS  K+ R  K++H   IR  +    F+   + S Y  C  L     +F     +
Sbjct: 501 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDK 560

Query: 73  PTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVH 132
               +N +I  +       ++L +FR M+L G  +   ++ PV  +C+ L SLRLGR+ H
Sbjct: 561 SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAH 620

Query: 133 GAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFS 192
              + +    D     +LI MY K G +  + KVF+G+ E++  SW+A++ GYG+HG+  
Sbjct: 621 AYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAK 680

Query: 193 EVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGFDLRPGLEHYTCM 252
           E   LFE M   G  PD+LTF  +LTAC+H GLI  G  Y   M+  F L+P L+HY C+
Sbjct: 681 EAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACV 740

Query: 253 VDLLGRVGQVEEAEKLIM-EMEIEPDEALWGALLSACRIHGKAEVADRVQTRFMK 307
           +D+LGR GQ+++A +++  EM  E D  +W +LLS+CRIH   E+ ++V  +  +
Sbjct: 741 IDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFE 795

[Close]
BLAST of Carg28018 vs. TAIR 10
Match: AT2G33680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 210.3 bits (534), Expect = 2.2e-54
Identity = 110/283 (38.87%), Postives = 160/283 (56.54%), Query Frame = 0 

Query: 14  LLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLPQATTIFSFATRRP 73
           +L ACS        KQ+H+  ++LG   H F  T L   YA    L  A   F     R 
Sbjct: 328 VLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERD 387

Query: 74  TFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCTGLSSLRLGRQVHG 133
             L+ +LI  +       ++L ++R M  +G   +  T+  V+K+C+ L++L LG+QVHG
Sbjct: 388 VALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHG 447

Query: 134 AVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFSE 193
             + +GF  ++P  +AL TMY KCG L     VF   P ++ VSW+A+++G   +G   E
Sbjct: 448 HTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDE 507

Query: 194 VFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGFDLRPGLEHYTCMV 253
              LFE M+ EG +PD++TF  +++ACSH G +ERG  YF MM     L P ++HY CMV
Sbjct: 508 ALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567

Query: 254 DLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEV 297
           DLL R GQ++EA++ I    I+    LW  LLSAC+ HGK E+
Sbjct: 568 DLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCEL 610

[Close]
BLAST of Carg28018 vs. TAIR 10
Match: AT4G19191.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 209.9 bits (533), Expect = 2.9e-54
Identity = 108/299 (36.12%), Postives = 168/299 (56.19%), Query Frame = 0 

Query: 5   QDIIPFYAALLQACSSTKNHRTLKQ---IHALTIRLGISHHDFIRTKLASTYAACHHLPQ 64
           ++  P  +  +   +S +N  TL Q   IH+  I LG            S Y+       
Sbjct: 250 EEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCS 309

Query: 65  ATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCTG 124
           A  +F   T R    +  +I  ++      ++L++F  M+ SG+  D  TL  +I  C  
Sbjct: 310 ARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK 369

Query: 125 LSSLRLGRQVHGAVVINGFSTD-LPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 184
             SL  G+ +     I G   D +   NALI MY KCG +  AR +FD  PE+  V+W+ 
Sbjct: 370 FGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTT 429

Query: 185 LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF 244
           ++AGY ++G+F E   LF +M++   KP+ +TF A+L AC+H G +E+G EYF +M+  +
Sbjct: 430 MIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVY 489

Query: 245 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADR 300
           ++ PGL+HY+CMVDLLGR G++EEA +LI  M  +PD  +WGALL+AC+IH   ++A++
Sbjct: 490 NISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQ 548

The following BLAST results are available for this feature:
BLAST of Carg28018 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019344.13.6e-176100.00Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
KAG6583697.11.1e-17599.68Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_023520705.13.4e-17498.38pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur... [more]
XP_022927399.15.8e-17498.70pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur... [more]
XP_022973156.13.9e-17096.45pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur... [more]
BLAST of Carg28018 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9STF32.1e-5738.46Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop... [more]
Q9LND42.5e-5535.49Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidop... [more]
Q0WN602.4e-5335.93Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana OX... [more]
P930053.1e-5338.87Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX... [more]
P0C8Q24.0e-5336.12Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidop... [more]
BLAST of Carg28018 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EHW32.8e-17498.70pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc... [more]
A0A6J1I7X01.9e-17096.45pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc... [more]
A0A0A0K1F71.7e-15589.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041310 PE=4 SV=1[more]
A0A6J1CNN21.1e-15187.25pentatricopeptide repeat-containing protein At1g06140, mitochondrial-like OS=Mom... [more]
A0A5A7UT421.7e-15086.32Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
BLAST of Carg28018 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G46790.11.5e-5838.46Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G06140.11.8e-5635.49Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G18485.11.7e-5435.93Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G33680.12.2e-5438.87Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G19191.12.9e-5436.12Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 174..221
e-value: 4.0E-11
score: 42.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 148..174
e-value: 0.001
score: 17.1
coord: 176..210
e-value: 1.4E-7
score: 29.2
coord: 249..273
e-value: 2.0E-4
score: 19.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 248..273
e-value: 1.1E-4
score: 22.2
coord: 76..104
e-value: 0.045
score: 14.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 174..208
score: 11.772493
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 7..120
e-value: 3.9E-7
score: 31.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 124..227
e-value: 7.3E-24
score: 86.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 235..308
e-value: 2.8E-10
score: 42.2
NoneNo IPR availablePANTHERPTHR47924PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 11..203
coord: 108..306
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..18
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg28018-RACarg28018-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding