Carg27960 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACCCAGATGAACTGAGTTTCTGCCTCCTCTCTGCATCCCATGTCTATGTATTGTAACTGTAACTAAAATCTTCATGTTTTCTTTTCGCAATTACTTTCCTTTTATAATAAGGTGCTGCACTTTATTAGATGTGTATCTTATGCTGGTGACAAAAACCAGTGGTTCCTTTGCAGTTTTGTATGGGATGATTTAAAAATTTGTGCTTTACTCGGGCTCGTGCTCTCGCTCCCTCATACTCTTGCTAATGTTCTTTCCTTTTTGCTCGCTCTCTTGCTCTTGCTCACTTTCTTGTTCTCCTTGCTAGTGATTTGTTGGACACTACAAGTTGTTGAATACTCGTAAGATATTCAACTTTGGTGGTTAATCGACTTGGGTAACACATTTCTCCTATTATAATCGTAAACTTTGAGAGTTCTTACCGAAGATCTTTTCATACGGATGAATGATCTTTCTCTCTTGCTTATTTCGTAGAAGATTTAAAAATTAAACGTTTAAGAATGATTAGAAACATTAATGTTGAAAATTCAGGAAAAATAAAAAAATTTCAGGTCTCCTGGTTCCTTTGACTGCAACAATGATTTCAAAATATTTCCCTGATCTGATTTAGGAGATGGAAAGGGCCACTAATTTCTTAGCCATTGTGTTCATCAATATGATCATTAGAGCTAATTATAACAATCATGTATGGCTACATATGAACTATTTCAGCGTATCGGGATCGACACAATCTACAGCATGAGCAATCCCCTTGACGCCAAAGACAACCCTTATGTTCAGTATTCCTCTGCTTCCCCATCCCCAAATGGGAAATGTTTGCTTTCTTCTGTTCTGCACTTAATGTGTTTGTAATAATTCCTCTGTGGATTCTCATGCTTTTTTCTTTTTTGCATATGTCCAACAGATAAGATGTGGGAAGCGTTGGATCGGTGAGGGAAGACGTTTGAAGATTGTTCTAGGATGATTGAGGCTGTAGCAGATAGCTTCTGGAATCACTGTCAGTTCTTTCATCAATTCAAGTTTGTTTCCTGACTGTGTTGTTTTCTAATTAGAAACTCATTTGCTGCTTCATCTTGATCTGAAACAAGCTTAGTTCTCTCCTGTTTAATATGATTGCTCAAGCTTTCAATGAATTGGTTCCAAATAATTAAAAGAGTTTCTGTCTGTAAAGAAATGGTTTCAGGTTTGTCATCTCTTGGTAATTTAATTGGTAGAGCTTTTAAAGATTGGTTTCAAACGATTGAAACTGATTCTTCTTGTAAAGAAATGGTTTCAGGTTTCCCTTAAAACAGTCATGATTTTCTTTGTCCTTTTGATCCTTTTCTGGAATAATGAAATTTGGACGCCTGAATTGTATTTCTATTTGATCTCTTCTCGGACTTGTTAGCTTCTAATCTGTTCTGCAATATATGTTTTTCCCAACAGTGAAACTTGGTTCTAGTGTCACTGATACGGCCATGGCCAGGCTTCATCTGGGGACGAAGTTACTTACGGAAGGTGGTGTTAGAAATTACGGATCTTCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCGTGGCTTTGCTTTGGGCTTGTAGATGTATTCCTTACTTACAAACCTATGATCATTCCCTAAATTAGCTAATGTAGGACTCCCTCCCAACAATCCTCAGCCGGTGGCTATGAAAAAGAATTCCAGCAGAAGTTTGTCTTTCCTTTGCCTGCTATCTGTCCACTTTCTCTGGGCCTGTAAATGGGACTCCATTCATATCCACAAAAAAAGAGTGGCCTTTTGTAGTAAGTTTCCTCTGTTACTATCCATCTCCTGGCCAGCCACAGTGGATCCTTTACAAGGTATGTCTGGCCCATTGTTCTTGAAGATATTTTGTTCTGAGGGATCTGAAATATGTAACTTAGCGTAAGCGAATCACAGCGTTTTTCTTGGCCTGTTTGAAACTAATACAGCCTTAGATATATTGAAGAAAAGACAAAATAGAACAGCAAGAGTACTCATTTGTTTGAGAGGTCTCCACAAAAAGATTCTACTGGCTGAACTCTCTCTGTTCACGTCCCCACTGACATATACTTCTCTTATCTAACATGTGGTGAGGGCCCTGCTGCCTTCACTTTCATAGATACTCTATCTCAGTTCCAGCTGACCAATTCTCCCTCCATCTAACTTCCATTTGTATTTCCCGCCCTTTATTCGATACGAATAGGTGGCTTCTTGAATGTAGGGAAAATTTCTAGTACTACCGTACCTCCGATCATTTGTTTGTCATATAAAAAATATACTTATAAATGGCGTCTATGAAATAAAATCGTATGTCATTTAGTAACGTGTCAAATGTTGAATGGAAGGAGTATGTACTTGTAACTGCCCAAGCTCACTGCTAGCAGATATTGTCCTCTTTGGGCTTTTCCTTTTGGGCTTCCGTACAAGGGGTTTAAAACGTATCTATTAGGGAGAGGTTTCCACACCTTCATCACAATCCACCCCCTTAGGGCACACCGCGCGATGTTTGGCTTTGATACCATTTGTAAGAGCTCAATCCCACCGCTAGCAAATATTGTTCTCTTTGGGCTTTCCCTTTCGAGCTTCCCCTCAAAGTTTTTAAAACGTGTCTATTAAGGAGAGGTTTCCACACCCTCATCACAATCCACCCCTTTAGGAGCCCAGCGTCCTTACTGGCACACTTCCTATTGTCTAGCTCTGATATCATTTGTAACACCCCAAGCCCACCGTTAGTAGATATTGTCATCTTTGGGCTTTTCTTTTTGGGCTTCCCCTTAAGGCTTTTAAAACGCGTCTGTTAGGAAGAGATTTTCATACCCTTAGAATATTTTGTTCATGCATTAATTACCCTGCTTTTTCTCTTATTCTTCGGCAAAGAGATCAGAACAAGAAGAGTTATCCACTGGTTGGTAGCCAAGTTGTCTGTACAATTATTCTCATCAGAACTTGCTTTAGTATGATTGTGTTTAGAATTTTAAGCATGGTGGAACTGTAGCAGCTAGGGAAATAATTATGAAGTACTGCAAAACAGTTTGATTTTCCTTGTTTTTTCTTATTGTGATAGAAATAATCAAAGTTCAAATCCATAATTATAGAAAGATACATCCATAAGAACAAAACTTACATTACATAAGATAAATAGAACTAGCTAGATTTATAGTTTAGTACTGATTTGAAACCCTGTGAGTAGCAAAGTGATGAGTTCATAATCTCTCAACTAAATTTAGGCGACGCTCACTCACTGTTTGGAGAGGATTATGAGGCTGAAAAAAGATAGTGTGTCAGGGAAATATGTTCTTCGTCCTTGTTTGGTCCCATTATTGCACATGCATGCATAGAACTAACTCAGAATTCATGCAACTATGCCCAACTGTGATCTTGAAAACTATGCTTGTGTTAACTACTTGATCTTGCACTTTATCCCCTTCTCAAATGATTGGTATTTGAGTAGAACCCAACTGGAATAATTAACCGAACGAATCACCGGAGGAGTTTCGTCGAGTTTCTTGTCCTTTTATCTATCTTTTTCGCTCAAGTTTTCAACTAGGGATCTTCTGTTAATGTCTTTAGTTGGGTTCCTTTTCATGACTGTGATGAATATGTAGGTGGTGATAGCGGTTGATCAGTTGGGGCAAATCAACCCTTCAAATCTTATGGACCCCTCACAAAAATACATCCAAATAATCACGAGGGACTCTCATGAATTC ATGAACCCAGATGAACTGAGTTTCTGCCTCCTCTCTGCATCCCATGTCTATGTATTCATGAGCAATCCCCTTGACGCCAAAGACAACCCTTATGTTCAGTATTCCTCTGCTTCCCCATCCCCAAATGGGAAATGTTTGCTTTCTTCTGTTCTGCACTTAATTTTCCTCTGTTACTATCCATCTCCTGGCCAGCCACAGTGGATCCTTTACAAGGGATCTTCTGTTAATGTCTTTAGTTGGGTTCCTTTTCATGACTGTGATGAATATGTGGTGATAGCGGTTGATCAGTTGGGGCAAATCAACCCTTCAAATCTTATGGACCCCTCACAAAAATACATCCAAATAATCACGAGGGACTCTCATGAATTC ATGAACCCAGATGAACTGAGTTTCTGCCTCCTCTCTGCATCCCATGTCTATGTATTCATGAGCAATCCCCTTGACGCCAAAGACAACCCTTATGTTCAGTATTCCTCTGCTTCCCCATCCCCAAATGGGAAATGTTTGCTTTCTTCTGTTCTGCACTTAATTTTCCTCTGTTACTATCCATCTCCTGGCCAGCCACAGTGGATCCTTTACAAGGGATCTTCTGTTAATGTCTTTAGTTGGGTTCCTTTTCATGACTGTGATGAATATGTGGTGATAGCGGTTGATCAGTTGGGGCAAATCAACCCTTCAAATCTTATGGACCCCTCACAAAAATACATCCAAATAATCACGAGGGACTCTCATGAATTC MNPDELSFCLLSASHVYVFMSNPLDAKDNPYVQYSSASPSPNGKCLLSSVLHLIFLCYYPSPGQPQWILYKGSSVNVFSWVPFHDCDEYVVIAVDQLGQINPSNLMDPSQKYIQIITRDSHEF Homology
BLAST of Carg27960 vs. NCBI nr
Match: XP_038887653.1 (GEM-like protein 2 isoform X1 [Benincasa hispida] >XP_038887654.1 GEM-like protein 2 isoform X1 [Benincasa hispida]) HSP 1 Score: 90.1 bits (222), Expect = 1.4e-14 Identity = 52/96 (54.17%), Postives = 57/96 (59.38%), Query Frame = 0
BLAST of Carg27960 vs. NCBI nr
Match: XP_038887655.1 (GEM-like protein 2 isoform X2 [Benincasa hispida]) HSP 1 Score: 90.1 bits (222), Expect = 1.4e-14 Identity = 52/96 (54.17%), Postives = 57/96 (59.38%), Query Frame = 0
BLAST of Carg27960 vs. NCBI nr
Match: XP_008460396.1 (PREDICTED: GEM-like protein 2 isoform X1 [Cucumis melo] >XP_008460397.1 PREDICTED: GEM-like protein 2 isoform X1 [Cucumis melo]) HSP 1 Score: 80.9 bits (198), Expect = 8.6e-12 Identity = 49/96 (51.04%), Postives = 54/96 (56.25%), Query Frame = 0
BLAST of Carg27960 vs. NCBI nr
Match: XP_008460399.1 (PREDICTED: GEM-like protein 2 isoform X3 [Cucumis melo]) HSP 1 Score: 80.9 bits (198), Expect = 8.6e-12 Identity = 49/96 (51.04%), Postives = 54/96 (56.25%), Query Frame = 0
BLAST of Carg27960 vs. NCBI nr
Match: XP_008460398.1 (PREDICTED: GEM-like protein 2 isoform X2 [Cucumis melo]) HSP 1 Score: 80.9 bits (198), Expect = 8.6e-12 Identity = 49/96 (51.04%), Postives = 54/96 (56.25%), Query Frame = 0
BLAST of Carg27960 vs. ExPASy Swiss-Prot
Match: Q8S8F8 (GLABRA2 expression modulator OS=Arabidopsis thaliana OX=3702 GN=GEM PE=1 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 5.3e-04 Identity = 33/110 (30.00%), Postives = 51/110 (46.36%), Query Frame = 0
BLAST of Carg27960 vs. ExPASy TrEMBL
Match: A0A1S3CCH4 (GEM-like protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 4.2e-12 Identity = 49/96 (51.04%), Postives = 54/96 (56.25%), Query Frame = 0
BLAST of Carg27960 vs. ExPASy TrEMBL
Match: A0A1S3CCV4 (GEM-like protein 2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 4.2e-12 Identity = 49/96 (51.04%), Postives = 54/96 (56.25%), Query Frame = 0
BLAST of Carg27960 vs. ExPASy TrEMBL
Match: A0A1S3CCD7 (GEM-like protein 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499226 PE=3 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 4.2e-12 Identity = 49/96 (51.04%), Postives = 54/96 (56.25%), Query Frame = 0
BLAST of Carg27960 vs. ExPASy TrEMBL
Match: A0A6J1E018 (GEM-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111026148 PE=3 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 9.3e-12 Identity = 48/96 (50.00%), Postives = 52/96 (54.17%), Query Frame = 0
BLAST of Carg27960 vs. ExPASy TrEMBL
Match: A0A6J1DUB7 (GEM-like protein 1 OS=Momordica charantia OX=3673 GN=LOC111023171 PE=3 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 8.1e-08 Identity = 42/107 (39.25%), Postives = 53/107 (49.53%), Query Frame = 0
BLAST of Carg27960 vs. TAIR 10
Match: AT2G22475.1 (GRAM domain family protein ) HSP 1 Score: 45.4 bits (106), Expect = 3.7e-05 Identity = 33/110 (30.00%), Postives = 51/110 (46.36%), Query Frame = 0
BLAST of Carg27960 vs. TAIR 10
Match: AT4G40100.1 (GRAM domain family protein ) HSP 1 Score: 42.4 bits (98), Expect = 3.2e-04 Identity = 19/36 (52.78%), Postives = 28/36 (77.78%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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