Carg27951 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg27951
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 6803736 .. 6804033 (+)
RNA-Seq ExpressionCarg27951
SyntenyCarg27951
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTGGAAGATTTCTATAGTCCCTACGATCATTAATAGCTCGACTGAATTGTCCGATTATAGCTCTACACGCTGTTTTAATGGCTCGATATGTAAAGCGACCAGCTCTACAACTTTGAGTGTCATATCTTCCAAAACTAAGATGTGTACCGTCCGGTTTGCAACTCCTACTACATCTGCCTTTACGAGGTAACTTTTTTTAATGTTTTTAATGGTTTTGTAGAGATATGACATTAAAATTTTATTTTTTCAGTTTAGTGTATGAATTTGGAGGTCGTATCTATTTAGTTATTTAG

mRNA sequence

ATGTATTGGAAGATTTCTATAGTCCCTACGATCATTAATAGCTCGACTGAATTGTCCGATTATAGCTCTACACGCTGTTTTAATGGCTCGATATGTAAAGCGACCAGCTCTACAACTTTGAGTGTCATATCTTCCAAAACTAAGATGTGTACCGTCCGGTTTGCAACTCCTACTACATCTGCCTTTACGAGTTTAGTGTATGAATTTGGAGGTCGTATCTATTTAGTTATTTAG

Coding sequence (CDS)

ATGTATTGGAAGATTTCTATAGTCCCTACGATCATTAATAGCTCGACTGAATTGTCCGATTATAGCTCTACACGCTGTTTTAATGGCTCGATATGTAAAGCGACCAGCTCTACAACTTTGAGTGTCATATCTTCCAAAACTAAGATGTGTACCGTCCGGTTTGCAACTCCTACTACATCTGCCTTTACGAGTTTAGTGTATGAATTTGGAGGTCGTATCTATTTAGTTATTTAG

Protein sequence

MYWKISIVPTIINSSTELSDYSSTRCFNGSICKATSSTTLSVISSKTKMCTVRFATPTTSAFTSLVYEFGGRIYLVI
Homology
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BLAST of Carg27951 vs. NCBI nr
Match: KAG7025066.1 (hypothetical protein SDJN02_13889, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.9 bits (372), Expect = 3.6e-32
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MYWKISIVPTIINSSTELSDYSSTRCFNGSICKATSSTTLSVISSKTKMCTVRFATPTTS 60
          MYWKISIVPTIINSSTELSDYSSTRCFNGSICKATSSTTLSVISSKTKMCTVRFATPTTS
Sbjct: 1  MYWKISIVPTIINSSTELSDYSSTRCFNGSICKATSSTTLSVISSKTKMCTVRFATPTTS 60

Query: 61 AFTSLVYEFGGRIYLVI 78
          AFTSLVYEFGGRIYLVI
Sbjct: 61 AFTSLVYEFGGRIYLVI 77

The following BLAST results are available for this feature:
BLAST of Carg27951 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025066.13.6e-32100.00hypothetical protein SDJN02_13889, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg27951 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg27951 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg27951 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27951-RACarg27951-RAmRNA