Carg27898 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27898
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	REF/SRPP-like protein At3g05500
Location	Carg_Chr10: 9140979 .. 9142915 (+)
RNA-Seq Expression	Carg27898
Synteny	Carg27898

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACATCATTCTTTCCTCTAGTTTTGGCTTTGGAAATGGTAAGCCCTCTTATAACTCTCTCATTACTTGAACTTTTTGCGATTCGATTCGGTTCGGGTTTTGTTGTATTTTGTGTAGGCGGCTCGGGCTGAGGAGGGGGGGCTGAAGTATTTGGAGTTCGTTCTAAAAGCGGCATTTCGAGCAGCAATGTGCTTACTCAAGTTTTACGGCTATGCGAAAGACTGGTCCGGTCCGCTGAAGTTCGGCATCGAAGCCATGGAAGGCACTGTGAAGTCCGTTGTTGGTCCTTTGTACAATAAGTTACACGGCCCTTCGAATGAGGTTCTTAAGTTCATCGATCGCAAGGTTCGTTTTTTTTCTTCTTTTGATCCCATAATCAGTTAAATTTGTTGTGCTCTTGAGTTGGTTTAAATTCCATGAAATGTACGTGAGTTGGGTTGGATTGGGTCGAGAAAATTTTTGGTTTAATCTAACACTTTGCCTTCGTTAGATGGTAACTCAACCCAGCTAAAAAAATTTAGTTAAAAAATAATAATTTTTAAAAAAGCTTTTATTTATCCCTAATTCACCATTTAACACACAACAAATACAAATTAAATTCAATCTAATCTTCTATTTTCAGGTTGGATGGTCGAGTGGTTAATATATATATATATATATATTAACACTCTTACTTATCTGTAATTCATAATTATTCGATACAATCTTAGATAAAAATATATTAAAAGTTCACAAAACAAAGACAAATTAAATCCAACTCAATCCAACACATATGAATTGTCGGGTTGAAAAAATTATTTTATAATTATTCGATACAATCTTAGATAAAATATATTAAAAGTTCACAAAACAAATACAAATTAATCTATAATCATAAAATATATATATATATATATATATTTAATTAAAAAAACTATATCTAAATCCAGACCGAATCTATTCAAGTTTAGACAAATTAATTCAACCCAACCCTTATAATTTGGATTGGGTCGGTTCGAGTCATCGGATTGTCAGGTTCGATGTATACCCCTAAATTCAACTAGCATTTGTTGGATGATGAAAGTCACACATGGCTAATTTAGGGAATGATCATGTGTTTATAATCATGAGAGCTTATACTCAAACTGGACAATATCATATTATTGTGAAGAGTCGTGTTCGTCTAACATGACATCAGAGTCATGCCCTAAACTTAGTCGTGCCAATACATTGGTAAATCCTCAAATGTCGAACAAAGGACTCCAAAAGAAAGGAGTCAACCCTCCCCGAAGGCATAGTAAAAAATGACTAAGACTCCAAAGGAGTCGAGCCTCAATTAAGGGGAGGTGTTGGATGATGAAAGTCCCACGTCGGCTAATTTAGAGAATGATCATAGGTTTATAATCAAAGAATACTCTCTCCATTGGTACGAGGCCTTTTGGGGAAGCCCAAAGCAAAGTCATGAGAGCTTATAGTCAAAGTGGACAATATCATACCATTGTGGGGAGTGATGTTCGTCTAACAGCATTAGAAACTTATTTTATTTGATCATAAACGTGTAGGTGGACGAGTCAGTGACAACGATCGACCGCCTTCTTCCTCCAACGGTCAAGCAGGTCTCATCTCAAGCCATCTCTGCTGCACTACAAACGCCTAAAGTGGCTCGAAACGTAGCATCTGAGATCCAACGTAGTGGCCTTAAAGACACCGTCACTAGTATTATGAGATCAGTGTATCCCAAGGCGGAACAGTCCGCAGCTTCAGCATGGCACGCACTGAACCAGTTGCCTGTCTTCCCCACTGTTGCGCAGGCCATCGTGCCAACAGCAGCGCTTTGCACTGAGAAATACAATGACACCGTGCGAGCCTCCGCCGAGAAGGATAACAAGGTCGCTTCACTCCTTCCATTGGTCCCTACTGAGGGGATCGCCAAAGTGTTTGACAAGATCAAAATTTAG

mRNA sequence

CTACATCATTCTTTCCTCTAGTTTTGGCTTTGGAAATGGCGGCTCGGGCTGAGGAGGGGGGGCTGAAGTATTTGGAGTTCGTTCTAAAAGCGGCATTTCGAGCAGCAATGTGCTTACTCAAGTTTTACGGCTATGCGAAAGACTGGTCCGGTCCGCTGAAGTTCGGCATCGAAGCCATGGAAGGCACTGTGAAGTCCGTTGTTGGTCCTTTGTACAATAAGTTACACGGCCCTTCGAATGAGGTTCTTAAGTTCATCGATCGCAAGATCCAACGTAGTGGCCTTAAAGACACCGTCACTAGTATTATGAGATCAGTGTATCCCAAGGCGGAACAGTCCGCAGCTTCAGCATGGCACGCACTGAACCAGTTGCCTGTCTTCCCCACTGTTGCGCAGGCCATCGTGCCAACAGCAGCGCTTTGCACTGAGAAATACAATGACACCGTGCGAGCCTCCGCCGAGAAGGATAACAAGGTCGCTTCACTCCTTCCATTGGTCCCTACTGAGGGGATCGCCAAAGTGTTTGACAAGATCAAAATTTAG

Coding sequence (CDS)

ATGGCGGCTCGGGCTGAGGAGGGGGGGCTGAAGTATTTGGAGTTCGTTCTAAAAGCGGCATTTCGAGCAGCAATGTGCTTACTCAAGTTTTACGGCTATGCGAAAGACTGGTCCGGTCCGCTGAAGTTCGGCATCGAAGCCATGGAAGGCACTGTGAAGTCCGTTGTTGGTCCTTTGTACAATAAGTTACACGGCCCTTCGAATGAGGTTCTTAAGTTCATCGATCGCAAGATCCAACGTAGTGGCCTTAAAGACACCGTCACTAGTATTATGAGATCAGTGTATCCCAAGGCGGAACAGTCCGCAGCTTCAGCATGGCACGCACTGAACCAGTTGCCTGTCTTCCCCACTGTTGCGCAGGCCATCGTGCCAACAGCAGCGCTTTGCACTGAGAAATACAATGACACCGTGCGAGCCTCCGCCGAGAAGGATAACAAGGTCGCTTCACTCCTTCCATTGGTCCCTACTGAGGGGATCGCCAAAGTGTTTGACAAGATCAAAATTTAG

Protein sequence

MAARAEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLYNKLHGPSNEVLKFIDRKIQRSGLKDTVTSIMRSVYPKAEQSAASAWHALNQLPVFPTVAQAIVPTAALCTEKYNDTVRASAEKDNKVASLLPLVPTEGIAKVFDKIKI

Homology

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BLAST of Carg27898 vs. NCBI nr
Match: KAG7023976.1 (REF/SRPP-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 331.6 bits (849), Expect = 3.8e-87
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MAARAEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLY 60
           MAARAEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLY
Sbjct: 1   MAARAEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLY 60

Query: 61  NKLHGPSNEVLKFIDRKIQRSGLKDTVTSIMRSVYPKAEQSAASAWHALNQLPVFPTVAQ 120
           NKLHGPSNEVLKFIDRKIQRSGLKDTVTSIMRSVYPKAEQSAASAWHALNQLPVFPTVAQ
Sbjct: 61  NKLHGPSNEVLKFIDRKIQRSGLKDTVTSIMRSVYPKAEQSAASAWHALNQLPVFPTVAQ 120

Query: 121 AIVPTAALCTEKYNDTVRASAEKDNKVASLLPLVPTEGIAKVFDKIKI 169
           AIVPTAALCTEKYNDTVRASAEKDNKVASLLPLVPTEGIAKVFDKIKI
Sbjct: 121 AIVPTAALCTEKYNDTVRASAEKDNKVASLLPLVPTEGIAKVFDKIKI 168

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BLAST of Carg27898 vs. NCBI nr
Match: XP_022961535.1 (REF/SRPP-like protein At3g05500 [Cucurbita moschata])

HSP 1 Score: 298.9 bits (764), Expect = 2.7e-77
Identity = 160/208 (76.92%), Postives = 164/208 (78.85%), Query Frame = 0


Query: 1   MAARAEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLY 60
           MAARAEEGGLKYLEF+LKAAFRAAMCLLKFY YAKDWSGPLKFG+EAMEGTVKSVVGPLY
Sbjct: 1   MAARAEEGGLKYLEFILKAAFRAAMCLLKFYDYAKDWSGPLKFGVEAMEGTVKSVVGPLY 60

Query: 61  NKLHGPSNEVLKFIDRK----------------------------------------IQR 120
           NKLHGPSNEVLKFIDRK                                        IQR
Sbjct: 61  NKLHGPSNEVLKFIDRKVDESVTTIDRLLPPTVKQVSSQAISAALQTPKVARNVASEIQR 120

Query: 121 SGLKDTVTSIMRSVYPKAEQSAASAWHALNQLPVFPTVAQAIVPTAALCTEKYNDTVRAS 169
           SGLKDTVT I++SVYPKAEQSAASAWHALNQLPVFPTVAQAIVPTAALCTEKYNDTVRAS
Sbjct: 121 SGLKDTVTGIVKSVYPKAEQSAASAWHALNQLPVFPTVAQAIVPTAALCTEKYNDTVRAS 180

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BLAST of Carg27898 vs. NCBI nr
Match: KAG6590440.1 (Respiratory burst oxidase-like protein B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 289.3 bits (739), Expect = 2.2e-74
Identity = 154/201 (76.62%), Postives = 157/201 (78.11%), Query Frame = 0


Query: 8    GGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLYNKLHGPS 67
            GGLKYLEF+LKAAFRAAMCLLKFY YAKDWSGPLKFG+EAMEGTVKSVVGPLYNKLHGPS
Sbjct: 927  GGLKYLEFILKAAFRAAMCLLKFYDYAKDWSGPLKFGVEAMEGTVKSVVGPLYNKLHGPS 986

Query: 68   NEVLKFIDRK----------------------------------------IQRSGLKDTV 127
            NEVLKFIDRK                                        IQRSGLKDTV
Sbjct: 987  NEVLKFIDRKVDESVTTIDRLLPPTVKQVSSQAISAALQTPKVARNVASEIQRSGLKDTV 1046

Query: 128  TSIMRSVYPKAEQSAASAWHALNQLPVFPTVAQAIVPTAALCTEKYNDTVRASAEKDNKV 169
            T I+RSVYPKAEQSAASAWHALNQLPVFPTVAQAIVPTAALCTEKYNDTVRAS EK NKV
Sbjct: 1047 TGIVRSVYPKAEQSAASAWHALNQLPVFPTVAQAIVPTAALCTEKYNDTVRASTEKGNKV 1106

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BLAST of Carg27898 vs. NCBI nr
Match: XP_023515953.1 (REF/SRPP-like protein At3g05500 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.8 bits (730), Expect = 2.4e-73
Identity = 156/208 (75.00%), Postives = 160/208 (76.92%), Query Frame = 0


Query: 1   MAARAEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLY 60
           MAARAEEGGLKYLEFVLKAAFRAA CLLKFYGYAKDWSGPLKFG+EAMEGTVKSVVGPLY
Sbjct: 1   MAARAEEGGLKYLEFVLKAAFRAATCLLKFYGYAKDWSGPLKFGLEAMEGTVKSVVGPLY 60

Query: 61  NKLHGPSNEVLKFIDRK----------------------------------------IQR 120
           NKLHGPSNEVLKFIDRK                                        IQR
Sbjct: 61  NKLHGPSNEVLKFIDRKVDESVTTIDRLLPPTVKQVSSQAISAALQMPKVARNVASEIQR 120

Query: 121 SGLKDTVTSIMRSVYPKAEQSAASAWHALNQLPVFPTVAQAIVPTAALCTEKYNDTVRAS 169
           SGLKDTVT I++SV PKAEQSAASAWHALNQLPVF TVAQAIVPTAAL TEKYNDTVRAS
Sbjct: 121 SGLKDTVTGIVKSVQPKAEQSAASAWHALNQLPVFSTVAQAIVPTAALYTEKYNDTVRAS 180

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BLAST of Carg27898 vs. NCBI nr
Match: XP_004135611.1 (REF/SRPP-like protein At3g05500 [Cucumis sativus] >KGN66066.1 hypothetical protein Csa_007216 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 9.8e-51
Identity = 120/220 (54.55%), Postives = 136/220 (61.82%), Query Frame = 0


Query: 1   MAARAEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLY 60
           M  RA++G LKYLEFV  AAFRA  C    YGYAKD SGPLK G+E +EGTVKSVV PLY
Sbjct: 13  MPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETVEGTVKSVVAPLY 72

Query: 61  NKLHGPSNEVLKFIDRK----------------------------------------IQR 120
           NK HG   EVLKF+DRK                                        ++R
Sbjct: 73  NKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAPEVARSVASEVRR 132

Query: 121 SGLKDTVTSIMRSVY---------------PKAEQSAASAWHALNQLPVFPTVAQAIVPT 166
           +GLKD+V+ I++SVY               PKAEQ AASAWH LNQLPVFPTVAQAI+PT
Sbjct: 133 AGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLPVFPTVAQAILPT 192

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BLAST of Carg27898 vs. ExPASy Swiss-Prot
Match: Q9MA63 (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana OX=3702 GN=At3g05500 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-35
Identity = 90/219 (41.10%), Postives = 119/219 (54.34%), Query Frame = 0


Query: 4   RAEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLYNKL 63
           + E+  LKYL+FV  AA  A +     Y  AKD SGPLK G+E++EG VK+VVGP+Y K 
Sbjct: 16  KEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKY 75

Query: 64  HGPSNEVLKFIDRK----------------------------------------IQRSGL 123
           H    EVLK++D+K                                        ++R+G+
Sbjct: 76  HDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGV 135

Query: 124 KDTVTSIMRSVY---------------PKAEQSAASAWHALNQLPVFPTVAQAIVPTAAL 168
            +T + + +SVY               PKAEQ A SAW  LNQLP+FP +AQ  VPTAA 
Sbjct: 136 VETASGMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAF 195

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BLAST of Carg27898 vs. ExPASy Swiss-Prot
Match: Q9SW70 (Stress-related protein OS=Vitis riparia OX=96939 GN=SRP PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-33
Identity = 87/213 (40.85%), Postives = 113/213 (53.05%), Query Frame = 0


Query: 6   EEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLYNKLHG 65
           EE  LKYL+FV  AA    +C    Y YAK+ SGPLK G++ +EGTVK+V+GP+Y K + 
Sbjct: 16  EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYD 75

Query: 66  PSNEVLKFIDRK----------------------------------------IQRSGLKD 125
              E+L F+DRK                                        +QR G+ D
Sbjct: 76  VPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVD 135

Query: 126 TVTSIMRSVY---------------PKAEQSAASAWHALNQLPVFPTVAQAIVPTAALCT 164
           T  +I ++VY               P AEQ A SAW +LN+LP+FP VAQ +VPTAA  +
Sbjct: 136 TAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWS 195

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BLAST of Carg27898 vs. ExPASy Swiss-Prot
Match: A2Y0H2 (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_017815 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.6e-30
Identity = 77/207 (37.20%), Postives = 115/207 (55.56%), Query Frame = 0


Query: 1   MAARAEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLY 60
           M A AEE  L+YLEFV +AA +  +     Y YAK  +GPL+ G++ +EGTVK+VVGP+Y
Sbjct: 26  MEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVY 85

Query: 61  NKLHGPSNEVLKFIDRK-----------------------------IQRSGLKDTVTSIM 120
           ++ HG   ++LKF+DRK                             ++++GL  T T + 
Sbjct: 86  DRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLA 145

Query: 121 RSVY---------------PKAEQSAASAWHALNQLPVFPTVAQAIVPTAALCTEKYNDT 164
           +S                 P AE+ AA AW ALN+LP+ P+V +A++P AA  + +YN  
Sbjct: 146 KSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTA 205

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BLAST of Carg27898 vs. ExPASy Swiss-Prot
Match: Q9FRA7 (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 131.7 bits (330), Expect = 7.6e-30
Identity = 77/207 (37.20%), Postives = 115/207 (55.56%), Query Frame = 0


Query: 1   MAARAEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLY 60
           M A AEE  L+YLEFV +AA +  +     Y YAK  +GPL+ G++ +EGTVK+VVGP+Y
Sbjct: 26  MEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVY 85

Query: 61  NKLHGPSNEVLKFIDRK-----------------------------IQRSGLKDTVTSIM 120
           ++ HG   ++LKF+DRK                             ++++GL  T T + 
Sbjct: 86  DRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLA 145

Query: 121 RSVY---------------PKAEQSAASAWHALNQLPVFPTVAQAIVPTAALCTEKYNDT 164
           +S                 P AE+ AA AW ALN+LP+ P+V +A++P AA  + +YN  
Sbjct: 146 KSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTA 205

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BLAST of Carg27898 vs. ExPASy Swiss-Prot
Match: Q41112 (Stress-related protein OS=Phaseolus vulgaris OX=3885 GN=SRP PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.9e-29
Identity = 73/158 (46.20%), Postives = 99/158 (62.66%), Query Frame = 0


Query: 31  YGYAKDWSGPLKFGIEAMEGTVKSVVGPLYNKLHGPSNEVLKFIDRKI------------ 90
           Y YAK+ +GPLK G+  +E  VK+VV P+Y++ H    E+LK+ DRK+            
Sbjct: 7   YSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGELDRHVPSNVK 66

Query: 91  -----QRSGL----KDTVTSIMRSVY----PKAEQSAASAWHALNQLPVFPTVAQAIVPT 150
                 RS +    +D V++  ++VY    P AEQ A SAW  LNQLP+FP VA A++P 
Sbjct: 67  KVSSQARSVVSEVRRDGVSTFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPK 126

Query: 151 AALCTEKYNDTVRASAEKDNKVASLLPLVPTEGIAKVF 164
           AA CTEKYN+ + +SAEK  +V++ LPLVPTE IAKVF
Sbjct: 127 AAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVF 164

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BLAST of Carg27898 vs. ExPASy TrEMBL
Match: A0A6J1HCH6 (REF/SRPP-like protein At3g05500 OS=Cucurbita moschata OX=3662 GN=LOC111462082 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.3e-77
Identity = 160/208 (76.92%), Postives = 164/208 (78.85%), Query Frame = 0


Query: 1   MAARAEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLY 60
           MAARAEEGGLKYLEF+LKAAFRAAMCLLKFY YAKDWSGPLKFG+EAMEGTVKSVVGPLY
Sbjct: 1   MAARAEEGGLKYLEFILKAAFRAAMCLLKFYDYAKDWSGPLKFGVEAMEGTVKSVVGPLY 60

Query: 61  NKLHGPSNEVLKFIDRK----------------------------------------IQR 120
           NKLHGPSNEVLKFIDRK                                        IQR
Sbjct: 61  NKLHGPSNEVLKFIDRKVDESVTTIDRLLPPTVKQVSSQAISAALQTPKVARNVASEIQR 120

Query: 121 SGLKDTVTSIMRSVYPKAEQSAASAWHALNQLPVFPTVAQAIVPTAALCTEKYNDTVRAS 169
           SGLKDTVT I++SVYPKAEQSAASAWHALNQLPVFPTVAQAIVPTAALCTEKYNDTVRAS
Sbjct: 121 SGLKDTVTGIVKSVYPKAEQSAASAWHALNQLPVFPTVAQAIVPTAALCTEKYNDTVRAS 180

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BLAST of Carg27898 vs. ExPASy TrEMBL
Match: A0A0A0M1J0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569430 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 4.8e-51
Identity = 120/220 (54.55%), Postives = 136/220 (61.82%), Query Frame = 0


Query: 1   MAARAEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLY 60
           M  RA++G LKYLEFV  AAFRA  C    YGYAKD SGPLK G+E +EGTVKSVV PLY
Sbjct: 13  MPVRADQGSLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETVEGTVKSVVAPLY 72

Query: 61  NKLHGPSNEVLKFIDRK----------------------------------------IQR 120
           NK HG   EVLKF+DRK                                        ++R
Sbjct: 73  NKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAMFAAQQAPEVARSVASEVRR 132

Query: 121 SGLKDTVTSIMRSVY---------------PKAEQSAASAWHALNQLPVFPTVAQAIVPT 166
           +GLKD+V+ I++SVY               PKAEQ AASAWH LNQLPVFPTVAQAI+PT
Sbjct: 133 AGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLPVFPTVAQAILPT 192

[Close]

BLAST of Carg27898 vs. ExPASy TrEMBL
Match: A0A5D3CFW4 (REF/SRPP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003980 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 6.2e-51
Identity = 122/220 (55.45%), Postives = 136/220 (61.82%), Query Frame = 0


Query: 1   MAARAEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLY 60
           MA RA+E  LKYLEFV  AAFRA  C    YGYAKD SGPLK G+E +EGTVKSVVGPL 
Sbjct: 1   MAVRADEDRLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETVEGTVKSVVGPLC 60

Query: 61  NKLHGPSNEVLKFIDRK----------------------------------------IQR 120
           NK HG   EVLKF+DRK                                        ++R
Sbjct: 61  NKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKHASSQAMSAAQQAPEVARNVASEVRR 120

Query: 121 SGLKDTVTSIMRSVY---------------PKAEQSAASAWHALNQLPVFPTVAQAIVPT 166
           SGLKD+V+ I++SVY               PKAEQ AASAWH LNQLPVFPTVAQAI+PT
Sbjct: 121 SGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLPVFPTVAQAILPT 180

[Close]

BLAST of Carg27898 vs. ExPASy TrEMBL
Match: A0A1S3BP12 (REF/SRPP-like protein At3g05500 OS=Cucumis melo OX=3656 GN=LOC103492163 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 6.2e-51
Identity = 122/220 (55.45%), Postives = 136/220 (61.82%), Query Frame = 0


Query: 1   MAARAEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLY 60
           MA RA+E  LKYLEFV  AAFRA  C    YGYAKD SGPLK G+E +EGTVKSVVGPL 
Sbjct: 13  MAVRADEDRLKYLEFVQTAAFRATECFFNVYGYAKDRSGPLKPGVETVEGTVKSVVGPLC 72

Query: 61  NKLHGPSNEVLKFIDRK----------------------------------------IQR 120
           NK HG   EVLKF+DRK                                        ++R
Sbjct: 73  NKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKHASSQAMSAAQQAPEVARNVASEVRR 132

Query: 121 SGLKDTVTSIMRSVY---------------PKAEQSAASAWHALNQLPVFPTVAQAIVPT 166
           SGLKD+V+ I++SVY               PKAEQ AASAWH LNQLPVFPTVAQAI+PT
Sbjct: 133 SGLKDSVSGIVKSVYAKYEPSAKQLYSKYEPKAEQCAASAWHKLNQLPVFPTVAQAILPT 192

[Close]

BLAST of Carg27898 vs. ExPASy TrEMBL
Match: A0A6J1CYC3 (REF/SRPP-like protein At3g05500 OS=Momordica charantia OX=3673 GN=LOC111015336 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.5e-49
Identity = 120/223 (53.81%), Postives = 136/223 (60.99%), Query Frame = 0


Query: 1   MAARAEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLY 60
           MAARAEE  LKYL FV  AAF A  C    YGYAKD SGPLK G+E +EGTVKSVVGPLY
Sbjct: 13  MAARAEEERLKYLAFVQTAAFFATACFFNVYGYAKDRSGPLKPGVETVEGTVKSVVGPLY 72

Query: 61  NKLHGPSNEVLKFIDRK----------------------------------------IQR 120
           NK HG   EVLKF+DRK                                        ++R
Sbjct: 73  NKFHGVPIEVLKFVDRKVDESVTKIDRHVPPTVKQASSQAVSAAQQAPEVARSVASEVRR 132

Query: 121 SGLKDTVTSIMRSVY---------------PKAEQSAASAWHALNQLPVFPTVAQAIVPT 169
           SGLKD+++ I++SVY               PKAEQ AA AWH LNQLPVFP VAQAI+PT
Sbjct: 133 SGLKDSLSGIVKSVYAKYEPTAKQLYFEYEPKAEQCAALAWHKLNQLPVFPHVAQAILPT 192

[Close]

BLAST of Carg27898 vs. TAIR 10
Match: AT3G05500.1 (Rubber elongation factor protein (REF) )

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-36
Identity = 90/219 (41.10%), Postives = 119/219 (54.34%), Query Frame = 0


Query: 4   RAEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLYNKL 63
           + E+  LKYL+FV  AA  A +     Y  AKD SGPLK G+E++EG VK+VVGP+Y K 
Sbjct: 16  KEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKY 75

Query: 64  HGPSNEVLKFIDRK----------------------------------------IQRSGL 123
           H    EVLK++D+K                                        ++R+G+
Sbjct: 76  HDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGV 135

Query: 124 KDTVTSIMRSVY---------------PKAEQSAASAWHALNQLPVFPTVAQAIVPTAAL 168
            +T + + +SVY               PKAEQ A SAW  LNQLP+FP +AQ  VPTAA 
Sbjct: 136 VETASGMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAF 195

[Close]

BLAST of Carg27898 vs. TAIR 10
Match: AT2G47780.1 (Rubber elongation factor protein (REF) )

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-29
Identity = 75/193 (38.86%), Postives = 103/193 (53.37%), Query Frame = 0


Query: 6   EEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLYNKLHG 65
           +E  LK+LEF+  AA   A C    Y  AKD +GPLK G+E +E  V++V+ PLY K H 
Sbjct: 37  DEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHD 96

Query: 66  PSNEVLKFIDRK-----------------------------IQRSGLKDTVTSIMRSV-- 125
              ++L F+DRK                             +QR+G+ DT  SI RSV  
Sbjct: 97  VPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQALTVATEVQRTGVVDTTKSIARSVRD 156

Query: 126 --YPKAEQSAASAWHALNQLPVFPTVAQAIVPTAALCTEKYNDTVRASAEKDNKVASLLP 166
              P AE  AA+ W  LNQLP+FP VA  ++PTA   +EKYND VR   ++D   A  LP
Sbjct: 157 KYEPAAEYYAATLWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLP 216

[Close]

BLAST of Carg27898 vs. TAIR 10
Match: AT1G67360.2 (Rubber elongation factor protein (REF) )

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-12
Identity = 53/201 (26.37%), Postives = 77/201 (38.31%), Query Frame = 0


Query: 5   AEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLYNKLH 64
           ++E  LK+L FV  A       +   Y YAK  SGPLK  +E +EG V +VV P+Y K  
Sbjct: 8   SKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFK 67

Query: 65  GPSNEVLKFIDRKIQRSGLK---------------------------DTVTSIMRSVYPK 124
              + +L F+D K+     K                            +     R+  PK
Sbjct: 68  DVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPK 127

Query: 125 AE-------------QSAASAWHALNQLPVFPTVAQAIVPTAALCTEKYNDTVRASAEKD 166
           A               ++   W  LNQ      +    +P AA  + +YND V       
Sbjct: 128 AAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMG 187

[Close]

BLAST of Carg27898 vs. TAIR 10
Match: AT1G67360.1 (Rubber elongation factor protein (REF) )

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-12
Identity = 53/201 (26.37%), Postives = 77/201 (38.31%), Query Frame = 0


Query: 5   AEEGGLKYLEFVLKAAFRAAMCLLKFYGYAKDWSGPLKFGIEAMEGTVKSVVGPLYNKLH 64
           ++E  LK+L FV  A       +   Y YAK  SGPLK  +E +EG V +VV P+Y K  
Sbjct: 8   SKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFK 67

Query: 65  GPSNEVLKFIDRKIQRSGLK---------------------------DTVTSIMRSVYPK 124
              + +L F+D K+     K                            +     R+  PK
Sbjct: 68  DVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPK 127

Query: 125 AE-------------QSAASAWHALNQLPVFPTVAQAIVPTAALCTEKYNDTVRASAEKD 166
           A               ++   W  LNQ      +    +P AA  + +YND V       
Sbjct: 128 AAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMG 187

The following BLAST results are available for this feature:

BLAST of Carg27898 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023976.1	3.8e-87	100.00	REF/SRPP-like protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022961535.1	2.7e-77	76.92	REF/SRPP-like protein At3g05500 [Cucurbita moschata]	[more]
KAG6590440.1	2.2e-74	76.62	Respiratory burst oxidase-like protein B, partial [Cucurbita argyrosperma subsp....	[more]
XP_023515953.1	2.4e-73	75.00	REF/SRPP-like protein At3g05500 [Cucurbita pepo subsp. pepo]	[more]
XP_004135611.1	9.8e-51	54.55	REF/SRPP-like protein At3g05500 [Cucumis sativus] >KGN66066.1 hypothetical prote...	[more]

BLAST of Carg27898 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9MA63	2.7e-35	41.10	REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana OX=3702 GN=At3g05500 PE=...	[more]
Q9SW70	1.5e-33	40.85	Stress-related protein OS=Vitis riparia OX=96939 GN=SRP PE=2 SV=1	[more]
A2Y0H2	7.6e-30	37.20	REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_0...	[more]
Q9FRA7	7.6e-30	37.20	REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonic...	[more]
Q41112	2.9e-29	46.20	Stress-related protein OS=Phaseolus vulgaris OX=3885 GN=SRP PE=2 SV=1	[more]

BLAST of Carg27898 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HCH6	1.3e-77	76.92	REF/SRPP-like protein At3g05500 OS=Cucurbita moschata OX=3662 GN=LOC111462082 PE...	[more]
A0A0A0M1J0	4.8e-51	54.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569430 PE=3 SV=1	[more]
A0A5D3CFW4	6.2e-51	55.45	REF/SRPP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16...	[more]
A0A1S3BP12	6.2e-51	55.45	REF/SRPP-like protein At3g05500 OS=Cucumis melo OX=3656 GN=LOC103492163 PE=3 SV=...	[more]
A0A6J1CYC3	1.5e-49	53.81	REF/SRPP-like protein At3g05500 OS=Momordica charantia OX=3673 GN=LOC111015336 P...	[more]

BLAST of Carg27898 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05500.1	1.9e-36	41.10	Rubber elongation factor protein (REF)	[more]
AT2G47780.1	2.3e-29	38.86	Rubber elongation factor protein (REF)	[more]
AT1G67360.2	1.9e-12	26.37	Rubber elongation factor protein (REF)	[more]
AT1G67360.1	1.9e-12	26.37	Rubber elongation factor protein (REF)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008802	Rubber elongation factor	PFAM	PF05755	REF	coord: 78..164 e-value: 3.1E-24 score: 85.9 coord: 6..80 e-value: 2.1E-25 score: 89.8
IPR008802	Rubber elongation factor	PANTHER	PTHR33732	REF/SRPP-LIKE PROTEIN OS05G0151300/LOC_OS05G05940	coord: 85..165 coord: 4..81
None	No IPR available	PANTHER	PTHR33732:SF9	REF/SRPP-LIKE PROTEIN OS05G0151300/LOC_OS05G05940	coord: 85..165
None	No IPR available	PANTHER	PTHR33732:SF9	REF/SRPP-LIKE PROTEIN OS05G0151300/LOC_OS05G05940	coord: 4..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27898-RA	Carg27898-RA	mRNA