Carg27818 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27818
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DNA excision repair protein ERCC-1
Location	Carg_Chr10: 7231651 .. 7236898 (+)
RNA-Seq Expression	Carg27818
Synteny	Carg27818

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATAAAACAAAAACCACCGACATATAAAATTAAAAAAGAGGGCCGCATTCGATGTGCCATAGAAATTGGGTCGATTCGGCAATCCTCCCGTCGTCCATTGCCGAAGGACGCAAGAAACACATAAGAAATTCCTTTCAACGCTTCAATTTCAGGAGCAGCAAGGAGACATATCCCTGTAAGATCATGGAGCAGCAAGGAGACGAGGAAGAGAACTTACAGCAAACCGCTCACAAAAAGATGAAGACGATTATCAAGATACCCTCTTATCAAGAAGTAATTGATAGCTCACAGCCGAAGTCTCAATCCTTCTCCCAAGCCTTTGCGTTCCTCAAATCCACTGAATTCTACTCTCCTCCTCCTCAACCAGTCCCTGCCTCCCCCTCTCAATCATTGCCGGATTCTGATATCACAAACCCTAGGTGTCCATTTCGCCATTTTTGTTAATTGTTTAGGATTTTGTGTTTTTGGTTAGCTGGATTTCAATGTGTTGTATGTGGTTTTGTTGTTGATTTCAGAAAAAATGATCAATTAGACACTCCATGTTCTTCAACATCAGCTTCTGCAGCTACTCCAGCTAATCGCTTGTCGGCGTCCAGCTCTGTTACTCGCAATGCCATTCTTGTCAGCAATAGACAGGTCAGATTGTTAATATAAGGCATTTGTTGGAACCATCTTTACTTTGAATTGGTTTAGATCATAGAGTTGTGATTATGGGTAAGCGATTCCACTGGCTGTCTTGTAGCTTAGCTTTGGATGTTTATATGTCAGTTATAAGTATTAGGAAGATTGACAAATATATATTCATGACTAGCTAATATCAAACTCTTTTTAGCTAGTGGTGAGGAGTATTTTGGTAATCTTAATGGAATGTTATGATCTTTGAATACGTCTCTTAGCTTAGCTGAGAGATCCCACATCGGTTGGGGAGGAGGACGATACATTCTTAATAAGGGTGTGGAAATCTCTCCCTAGTAGATGCGTTTTAAAAACCTTGAGGGGAAGTCTAGAAGGGAAAACCTGAAGAGGACAATATCTGCTAGAGGTGGGCTTGTGTTGTTAAATGGTATCAGAGCCAGACATTGGGCGATGTGCCAGTGAGGAGGCTGAGCCCCAAAGTGGGTGGACACGAGGTAGTGTGCCAGCAATGATGCTGGGTCCCAAAGGGGGTGAATTGAGGGGTCCTACAAGGGAAGGAGTGCTAGCGAGAACGCTGGGCACCAGGTGTGTGGGGGGGGGAGGCAACGTTTTCGTTGGCACACCACCCCCCTTTGGGGCTTAGTGTCCTCGTGACACACCGCCCAGTGTCTAGCTCTAATGTCATTTGTAACATCTCAAGCTTACCGCTAGCAGATATTGTCTTCTCTGAGCTTTCCCTTTTGGGCTTCCCTTCAAAGTTTCTAAAATGCGTCTACTAGGGAGAGGTTTCCACACCCTTGTAAAGAATGCTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACAAGAAGTATATTTTTTGGCGTATTACTTCAAGTTTACTTTATTTGAAGTTAATGCCATTATTAAGCCGTTAATAATAGTGAATTGGTTCATCTCATGCTTTTCTCAGAGAGGAAATCCACTTCTCAAACACATTAGGAATGTGAGATGGACTTTTGCTGATGTTGTACCCGATTACTTACTCGGGAATAGCTCTTGTGCTCTCTATCTAAGGTTCGAGTTTCATTTCCTTTCTATTCACTCTACTCATTGTATCAAAAGAACTAAAACAAAATAAAATTGAACTCTTGATTTAGATTTAGAGTGCCCAGTGTGCATATAAGCTTGTTTTGTCTGACTTATGTGCAACACGGCACTCATAAACTCGAGTTTATGAATCATTGAAGTCATTCCTACTATGAAATGTGGTTATATTTAGTATTTTTCTTTTAAAAAAAATAAGAACCAAGTTTTCATTGAGAGAAATGAAATAACCTACAAGACAGAATCTACCCGACATACTTAAACGAGGTATGATGTAACAGCCTAAGTCCACCGCTAGTAGATATTGTCCTCTTTGGGCTTTTCCTTCTGGGCTTCCCTTTAAGGTTTTAAAACGCGTCTAATAGTGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCCCCTCTCCAACTGACGTGGGATCTTACAATCCACCCCTTGGGGCCTAGTGTCCTTGTTGGCACACCGCTCGGTGTTGTCTCTGATACCATTTGTAACAGCCCAAATCCAACGCTAGCATTTGGGATCTCACAATCCACCGCTAGCCGATGTTGTCCTCTTTAGACTTTCTCTTTTGGGCTTCCTTTGAAGATTTTAAAACGCGTCTACTAGAGAGAGGTTTCTACATCCTTATAAGGAATGCTTTGTTCCCCTCTCCAACTGATGTGCGATCTCACAATCTACCTCCCAATCTACCTCCCTTGTGGACCCAGCGTCCTTGATGGCACACTGCTTGGTGCTGGCTTTGATACCATTTGTAACAGTCAAAATCCACTACTAGCAGATATTGTCCTCTTTGGGCTTTCACTTCTGAGCTTCCCCTCAAGGTTTTAAAATGCATTTACCAAGGAGAGGTTTTCACACCCTTATAAGAAATGCTTCGTTCCCCTTTCCAACCAAGGTGAGATCTCACATCTGTCTAAGGAGGTCTAACACTAATTACATGAATAGATCTCAATCCAACAAAGTGTAACTTGGTAATACAAAATACCCGATCAGCAAACGTGATGTACACCCAACCAACTCCCAAAGCTCCTCCCAAGTTCCCTTAGCCCTCTAAATGTCCTATTGTTCCTCTCTAACCAAATTTAACACAAAGTAGCAAAAACACAAGCTTGCCACAAACAAAACTCTTCCTTTATCCCTAAAAGAAGGGTTCGGGAGCACCTCCTCGAACATGGACAACAACCTCTATTGCTAGCCAAAATAAACCCAAATGTCCTGAAGGAAAATCGCAAAGTATAAGGTCAAGGTCCTCTTCCTGCTACTTGCAAACAACACACCACCAGAGCTGCTTTAGCCTTTGAATTTTTAACCTTAGTACTGGTTTTGAACTTGCAAAAAATTATGCATTAATCATCTAGTCTTCTTCTTGCTGTATGTTGGAGTATTTCATGGTTAGATCAATCCTATTTTGCAGTCTTCGGTATCATCTACTGCATCCGGACTACCTATACTACCGTATAAGAGAACTACAAAAAAATTTCAAGCTTCGAGTCGTTCTGTGTCATGTCGATGTGGTAAGAAACCGTACCGCGTAGCCACCTTTTTTTGTTACCCTTTTCTCCATTTTCCAGATTAAGTCTTCGTAGTCATTTTGATGCTCGTGTGAAGTAATGTCATCGATTAGTTTCTTTCAGGAAGATGTTGTCAAGCCTTTGCTTGAAGTCACCAAAACAGCTCTACTTCACGATTGTACCCTTCTTTGTGCTTGGAGGTACATTTCATTATTAAGCATTTTTGGTAAGTATTATATTGCAAAGTGAGTTTAAAAGTTTCATTTCTGTTTTTTATTAGTTTGGAGGAATGTGGTCGTTACTTGGAGACTATAAAAGTTTACGAAAACAAGCCCGCAGATCTTATTCAAGGTCAGATGGACACCGACTACCTCTCTCGGGTATTGGTTTTCTTAAAGCTTTTTGCCTAATTTCTGTGATACCACTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGCGTGGAAAATTCTCCCTAGAAGATGCGTTTTAAAAACCTTGAGGGGAAACCCGAAAGGGGAAGCCCAAAGAGGATAATATCGGCTAGCAGTGAATTTGGGTTGTTACAACCACAATCACTGTGGCCTTTTATTATATCAACTATAGCCTCTTTTTTTCTTTCCATAAAGCTAAATCCACGACAACTATATTCTGAATTAAAATTCTTGTTTTAATTGTAGCTAACTCATGTCCTAACATCAGTTCGGCACGTTAACAAGACTGATGTGGTTACCCTCGGGACGACATTTGGGGTACGCCTCTGCTGTATTTTCGCTAAGATTCTGCAGTTATTGTCTGTTATGTCTTGTTTGGTGTCGAACTTCTAATTTGTTTTTCGTTGCAGTCTCTATCTCATGTCATGGATGCATCAATGGAAGATCTAGCTCGTTGCCCTGGTATAGGCGAACGCAAGGTAGACCTTTTTTTTCGAAACGGGACCCTTCGACTGTTTCCTTAGTTCTTGTTATTTGTACTCTTACTTGTTGGTTTTGCAAATTTATTTTGAAAATGTACCATGTCTTTGATGTCATTCATAACATTTGAGCTGGTTTTAGCTAGAAGGATAGCTTTCTTTTGGAGAACCGACGTCCCACGTCGATTGGGAAGGAGAACAAAACATTCTTTATAAGGGTGTGGAAACCTTGAGGGGAAGGGAAAGCCCAAACTAGCGATGGGCTTGGGCAGTTACAAATGGATCAGAGCCAGACACCGGGCGAAGTCCCGAAGGGGGTGGACACGAGGTGGTGTGCCAGTAAGGACGTTGGGCCTCGAATGGGGGTGGTTTGGAGGGTCCCATATCGATTGGAGAAGGGAACGAGTGCCGGTGAGGACGCTGGGTCCCAAAAGGGGGTGGATTGTGAGATCCCATATCGGTTGGGGAGGAGAATGAAACATTCTTTATAAGGGTGTGGAAACCTCTCTCTAATAGATGCGTGTCCGGGAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGATTTGGGAAGTTACCTGCTTTTTATCAACAAGACAATAACATATTATAAGTAATCATAGAAACATTTACAACTATTAGATAATGGTATGCTGGGGAAGATGCAAATGAACACGAGCGTCACATAGTGACATACCGTATCGATAACATTTAGCCTTCAACTGTGATATACATAGCTCGATTGTTTGCACGAATGCTGTTATTAAATTCATCTTACTCGTCAGGTAAGGCGGCTGTACGACACTTTTCATGAGCCATTCAAGCGCGTCGTTTCAACCCATCCTGCCGTTCTAGAAACCCCAACCCAGAATAATACTGAACCTCGCTCGGTCGGTGAAGAACAAGATGTGGATGGGAAGAACACAGAAGATGCTAGCCAACACAAAAAAGAACCTGAATTGAACATCAAATCAGCTCTGTCTGCTGCTTTTGCCAAATATTCTGCTAAAATTGGTAAAAGTAGTAAGCCAGAAGGAGAGGAAAAAGAGCCTGAAAATAGCAACTCGCAGTAA

mRNA sequence

AAAAATAAAACAAAAACCACCGACATATAAAATTAAAAAAGAGGGCCGCATTCGATGTGCCATAGAAATTGGGTCGATTCGGCAATCCTCCCGTCGTCCATTGCCGAAGGACGCAAGAAACACATAAGAAATTCCTTTCAACGCTTCAATTTCAGGAGCAGCAAGGAGACATATCCCTGTAAGATCATGGAGCAGCAAGGAGACGAGGAAGAGAACTTACAGCAAACCGCTCACAAAAAGATGAAGACGATTATCAAGATACCCTCTTATCAAGAAGTAATTGATAGCTCACAGCCGAAGTCTCAATCCTTCTCCCAAGCCTTTGCGTTCCTCAAATCCACTGAATTCTACTCTCCTCCTCCTCAACCAGTCCCTGCCTCCCCCTCTCAATCATTGCCGGATTCTGATATCACAAACCCTAGAAAAAATGATCAATTAGACACTCCATGTTCTTCAACATCAGCTTCTGCAGCTACTCCAGCTAATCGCTTGTCGGCGTCCAGCTCTGTTACTCGCAATGCCATTCTTGTCAGCAATAGACAGAGAGGAAATCCACTTCTCAAACACATTAGGAATGTGAGATGGACTTTTGCTGATGTTGTACCCGATTACTTACTCGGGAATAGCTCTTGTGCTCTCTATCTAAGTCTTCGGTATCATCTACTGCATCCGGACTACCTATACTACCGTATAAGAGAACTACAAAAAAATTTCAAGCTTCGAGTCGTTCTGTGTCATGTCGATGTGGAAGATGTTGTCAAGCCTTTGCTTGAAGTCACCAAAACAGCTCTACTTCACGATTGTACCCTTCTTTGTGCTTGGAGTTTGGAGGAATGTGGTCGTTACTTGGAGACTATAAAAGTTTACGAAAACAAGCCCGCAGATCTTATTCAAGGTCAGATGGACACCGACTACCTCTCTCGGCTAACTCATGTCCTAACATCAGTTCGGCACGTTAACAAGACTGATGTGGTTACCCTCGGGACGACATTTGGGTCTCTATCTCATGTCATGGATGCATCAATGGAAGATCTAGCTCGTTGCCCTGGTATAGGCGAACGCAAGGTAAGGCGGCTGTACGACACTTTTCATGAGCCATTCAAGCGCGTCGTTTCAACCCATCCTGCCGTTCTAGAAACCCCAACCCAGAATAATACTGAACCTCGCTCGGTCGGTGAAGAACAAGATGTGGATGGGAAGAACACAGAAGATGCTAGCCAACACAAAAAAGAACCTGAATTGAACATCAAATCAGCTCTGTCTGCTGCTTTTGCCAAATATTCTGCTAAAATTGGTAAAAGTAGTAAGCCAGAAGGAGAGGAAAAAGAGCCTGAAAATAGCAACTCGCAGTAA

Coding sequence (CDS)

ATGTGCCATAGAAATTGGGTCGATTCGGCAATCCTCCCGTCGTCCATTGCCGAAGGACGCAAGAAACACATAAGAAATTCCTTTCAACGCTTCAATTTCAGGAGCAGCAAGGAGACATATCCCTGTAAGATCATGGAGCAGCAAGGAGACGAGGAAGAGAACTTACAGCAAACCGCTCACAAAAAGATGAAGACGATTATCAAGATACCCTCTTATCAAGAAGTAATTGATAGCTCACAGCCGAAGTCTCAATCCTTCTCCCAAGCCTTTGCGTTCCTCAAATCCACTGAATTCTACTCTCCTCCTCCTCAACCAGTCCCTGCCTCCCCCTCTCAATCATTGCCGGATTCTGATATCACAAACCCTAGAAAAAATGATCAATTAGACACTCCATGTTCTTCAACATCAGCTTCTGCAGCTACTCCAGCTAATCGCTTGTCGGCGTCCAGCTCTGTTACTCGCAATGCCATTCTTGTCAGCAATAGACAGAGAGGAAATCCACTTCTCAAACACATTAGGAATGTGAGATGGACTTTTGCTGATGTTGTACCCGATTACTTACTCGGGAATAGCTCTTGTGCTCTCTATCTAAGTCTTCGGTATCATCTACTGCATCCGGACTACCTATACTACCGTATAAGAGAACTACAAAAAAATTTCAAGCTTCGAGTCGTTCTGTGTCATGTCGATGTGGAAGATGTTGTCAAGCCTTTGCTTGAAGTCACCAAAACAGCTCTACTTCACGATTGTACCCTTCTTTGTGCTTGGAGTTTGGAGGAATGTGGTCGTTACTTGGAGACTATAAAAGTTTACGAAAACAAGCCCGCAGATCTTATTCAAGGTCAGATGGACACCGACTACCTCTCTCGGCTAACTCATGTCCTAACATCAGTTCGGCACGTTAACAAGACTGATGTGGTTACCCTCGGGACGACATTTGGGTCTCTATCTCATGTCATGGATGCATCAATGGAAGATCTAGCTCGTTGCCCTGGTATAGGCGAACGCAAGGTAAGGCGGCTGTACGACACTTTTCATGAGCCATTCAAGCGCGTCGTTTCAACCCATCCTGCCGTTCTAGAAACCCCAACCCAGAATAATACTGAACCTCGCTCGGTCGGTGAAGAACAAGATGTGGATGGGAAGAACACAGAAGATGCTAGCCAACACAAAAAAGAACCTGAATTGAACATCAAATCAGCTCTGTCTGCTGCTTTTGCCAAATATTCTGCTAAAATTGGTAAAAGTAGTAAGCCAGAAGGAGAGGAAAAAGAGCCTGAAAATAGCAACTCGCAGTAA

Protein sequence

MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAHKKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPASPSQSLPDSDITNPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFADVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHPAVLETPTQNNTEPRSVGEEQDVDGKNTEDASQHKKEPELNIKSALSAAFAKYSAKIGKSSKPEGEEKEPENSNSQ

Homology

[Close]

BLAST of Carg27818 vs. NCBI nr
Match: KAG7023940.1 (DNA excision repair protein ERCC-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 846.7 bits (2186), Expect = 9.1e-242
Identity = 432/432 (100.00%), Postives = 432/432 (100.00%), Query Frame = 0


Query: 1   MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH 60
           MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH
Sbjct: 1   MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH 60

Query: 61  KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPASPSQSLPDSDIT 120
           KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPASPSQSLPDSDIT
Sbjct: 61  KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPASPSQSLPDSDIT 120

Query: 121 NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA 180
           NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA
Sbjct: 121 NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA 180

Query: 181 DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE 240
           DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE
Sbjct: 181 DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE 240

Query: 241 VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRH 300
           VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRH
Sbjct: 241 VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRH 300

Query: 301 VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHPAVL 360
           VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHPAVL
Sbjct: 301 VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHPAVL 360

Query: 361 ETPTQNNTEPRSVGEEQDVDGKNTEDASQHKKEPELNIKSALSAAFAKYSAKIGKSSKPE 420
           ETPTQNNTEPRSVGEEQDVDGKNTEDASQHKKEPELNIKSALSAAFAKYSAKIGKSSKPE
Sbjct: 361 ETPTQNNTEPRSVGEEQDVDGKNTEDASQHKKEPELNIKSALSAAFAKYSAKIGKSSKPE 420

Query: 421 GEEKEPENSNSQ 433
           GEEKEPENSNSQ
Sbjct: 421 GEEKEPENSNSQ 432

[Close]

BLAST of Carg27818 vs. NCBI nr
Match: KAG6590378.1 (DNA excision repair protein ERCC-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 845.5 bits (2183), Expect = 2.0e-241
Identity = 431/432 (99.77%), Postives = 432/432 (100.00%), Query Frame = 0


Query: 1   MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH 60
           MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH
Sbjct: 1   MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH 60

Query: 61  KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPASPSQSLPDSDIT 120
           KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPASPSQSLPDSDIT
Sbjct: 61  KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPASPSQSLPDSDIT 120

Query: 121 NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA 180
           NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA
Sbjct: 121 NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA 180

Query: 181 DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE 240
           DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE
Sbjct: 181 DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE 240

Query: 241 VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRH 300
           VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRH
Sbjct: 241 VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRH 300

Query: 301 VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHPAVL 360
           VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDT+HEPFKRVVSTHPAVL
Sbjct: 301 VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTYHEPFKRVVSTHPAVL 360

Query: 361 ETPTQNNTEPRSVGEEQDVDGKNTEDASQHKKEPELNIKSALSAAFAKYSAKIGKSSKPE 420
           ETPTQNNTEPRSVGEEQDVDGKNTEDASQHKKEPELNIKSALSAAFAKYSAKIGKSSKPE
Sbjct: 361 ETPTQNNTEPRSVGEEQDVDGKNTEDASQHKKEPELNIKSALSAAFAKYSAKIGKSSKPE 420

Query: 421 GEEKEPENSNSQ 433
           GEEKEPENSNSQ
Sbjct: 421 GEEKEPENSNSQ 432

[Close]

BLAST of Carg27818 vs. NCBI nr
Match: XP_022961554.1 (DNA excision repair protein ERCC-1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 835.1 bits (2156), Expect = 2.7e-238
Identity = 426/432 (98.61%), Postives = 430/432 (99.54%), Query Frame = 0


Query: 1   MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH 60
           MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH
Sbjct: 1   MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH 60

Query: 61  KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPASPSQSLPDSDIT 120
           KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPAS SQSLPDSDIT
Sbjct: 61  KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPASSSQSLPDSDIT 120

Query: 121 NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA 180
           NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA
Sbjct: 121 NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA 180

Query: 181 DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE 240
           DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE
Sbjct: 181 DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE 240

Query: 241 VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRH 300
           VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRH
Sbjct: 241 VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRH 300

Query: 301 VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHPAVL 360
           VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHP+VL
Sbjct: 301 VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHPSVL 360

Query: 361 ETPTQNNTEPRSVGEEQDVDGKNTEDASQHKKEPELNIKSALSAAFAKYSAKIGKSSKPE 420
           ETPTQN+TEPRS+ EEQDVDGKNTEDASQHKKEPEL+IKSALSAAFAKYSAKIGKSSKPE
Sbjct: 361 ETPTQNSTEPRSIREEQDVDGKNTEDASQHKKEPELSIKSALSAAFAKYSAKIGKSSKPE 420

Query: 421 GEEKEPENSNSQ 433
           GEEKEPENSNSQ
Sbjct: 421 GEEKEPENSNSQ 432

[Close]

BLAST of Carg27818 vs. NCBI nr
Match: XP_022961555.1 (DNA excision repair protein ERCC-1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 791.2 bits (2042), Expect = 4.5e-225
Identity = 409/432 (94.68%), Postives = 413/432 (95.60%), Query Frame = 0


Query: 1   MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH 60
           MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH
Sbjct: 1   MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH 60

Query: 61  KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPASPSQSLPDSDIT 120
           KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPAS SQSLPDSDIT
Sbjct: 61  KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPASSSQSLPDSDIT 120

Query: 121 NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA 180
           NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA
Sbjct: 121 NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA 180

Query: 181 DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE 240
           DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE
Sbjct: 181 DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE 240

Query: 241 VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRH 300
           VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQ                 VRH
Sbjct: 241 VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQ-----------------VRH 300

Query: 301 VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHPAVL 360
           VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHP+VL
Sbjct: 301 VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHPSVL 360

Query: 361 ETPTQNNTEPRSVGEEQDVDGKNTEDASQHKKEPELNIKSALSAAFAKYSAKIGKSSKPE 420
           ETPTQN+TEPRS+ EEQDVDGKNTEDASQHKKEPEL+IKSALSAAFAKYSAKIGKSSKPE
Sbjct: 361 ETPTQNSTEPRSIREEQDVDGKNTEDASQHKKEPELSIKSALSAAFAKYSAKIGKSSKPE 415

Query: 421 GEEKEPENSNSQ 433
           GEEKEPENSNSQ
Sbjct: 421 GEEKEPENSNSQ 415

[Close]

BLAST of Carg27818 vs. NCBI nr
Match: XP_023516191.1 (DNA excision repair protein ERCC-1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 738.8 bits (1906), Expect = 2.7e-209
Identity = 381/388 (98.20%), Postives = 385/388 (99.23%), Query Frame = 0


Query: 45  MEQQGDEEENLQQTAHKKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQ 104
           MEQQGD+EENLQQTAHKKMKT+IKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQ
Sbjct: 1   MEQQGDDEENLQQTAHKKMKTMIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQ 60

Query: 105 PVPASPSQSLPDSDITNPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQR 164
           PVPAS SQSLPDSDITNPRKNDQLDTPCSSTSASAATPAN LSASSSV RNAILVSNRQR
Sbjct: 61  PVPAS-SQSLPDSDITNPRKNDQLDTPCSSTSASAATPANSLSASSSVPRNAILVSNRQR 120

Query: 165 GNPLLKHIRNVRWTFADVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRV 224
           GNPLLKHIRNVRWTFADVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRV
Sbjct: 121 GNPLLKHIRNVRWTFADVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRV 180

Query: 225 VLCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMD 284
           VLCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMD
Sbjct: 181 VLCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMD 240

Query: 285 TDYLSRLTHVLTSVRHVNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDT 344
           TDYLSRLTHVLTSVRHVNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDT
Sbjct: 241 TDYLSRLTHVLTSVRHVNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDT 300

Query: 345 FHEPFKRVVSTHPAVLETPTQNNTEPRSVGEEQDVDGKNTEDASQHKKEPELNIKSALSA 404
           FHEPFKRV+STHPAVLETPTQNNTEPRS+GEEQDVDGKNTEDASQHKKEPELNIKSALSA
Sbjct: 301 FHEPFKRVISTHPAVLETPTQNNTEPRSIGEEQDVDGKNTEDASQHKKEPELNIKSALSA 360

Query: 405 AFAKYSAKIGKSSKPEGEEKEPENSNSQ 433
           AFAKYSAKIGKSSKPEGEEKEPENSNSQ
Sbjct: 361 AFAKYSAKIGKSSKPEGEEKEPENSNSQ 387

[Close]

BLAST of Carg27818 vs. ExPASy Swiss-Prot
Match: Q9MA98 (DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana OX=3702 GN=ERCC1 PE=2 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 1.3e-126
Identity = 244/403 (60.55%), Postives = 302/403 (74.94%), Query Frame = 0


Query: 46  EQQGDEEENLQQTAHKKMKT--IIKIPSYQEVIDSSQPK---------SQSFSQAFAFLK 105
           +  G++  +L Q   +K KT  +I +PSYQEV++SSQ K         SQSFSQAFAF+K
Sbjct: 5   DDDGEKSRSLHQQIARKPKTQIVIGVPSYQEVLESSQTKSTPPSLFKPSQSFSQAFAFVK 64

Query: 106 STEFYSPPPQPVPASPSQSLPDSDITNPRKNDQLDTPCSSTSASAATPANRLSASSSVTR 165
           S++ YSPPP P  A+ S S P      P  + Q      ++S+S       + ++++  R
Sbjct: 65  SSDVYSPPP-PSSAAASSSQPSGASQVPHSSSQTHQTDGASSSSTPVATGSVPSNTTQNR 124

Query: 166 NAILVSNRQRGNPLLKHIRNVRWTFADVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIR 225
           NAILVS+RQ+GNPLLKHIRNV+W F+D++PDY+LG +SCALYLSLRYHLLHPDYLY+RIR
Sbjct: 125 NAILVSHRQKGNPLLKHIRNVKWVFSDIIPDYVLGQNSCALYLSLRYHLLHPDYLYFRIR 184

Query: 226 ELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENK 285
           ELQKNFKL VVLCHVDVED VKPLLEVTKTALLHDCTLLCAWS+ EC RYLETIKVYENK
Sbjct: 185 ELQKNFKLSVVLCHVDVEDTVKPLLEVTKTALLHDCTLLCAWSMTECARYLETIKVYENK 244

Query: 286 PADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIG 345
           PADLIQGQMDTDYLSRL H LTS+RHVNK+DVVTLG+TFGSL+H++DASMEDLARCPGIG
Sbjct: 245 PADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIIDASMEDLARCPGIG 304

Query: 346 ERKVRRLYDTFHEPFKRVVSTHPAVLETPTQNNTEPRSVGEEQDV--DGKNTEDASQHKK 405
           ERKV+RLYDTFHEPFKR  S++P+V+E P       + V  E+ V  D    ED+ + KK
Sbjct: 305 ERKVKRLYDTFHEPFKRATSSYPSVVEPPIPEAPVEKDVNSEEPVEEDEDFVEDSRKRKK 364

Query: 406 ---EPELNIKSALSAAFAKYSAKIGKSSKPEGEEKEPENSNSQ 433
              EPE  +K+ALSA FA+YS ++ K  + + E+     S+++
Sbjct: 365 KEPEPEKTVKTALSAVFARYSDRLSKKKEKQKEKDTTTASDAE 406

[Close]

BLAST of Carg27818 vs. ExPASy Swiss-Prot
Match: P07992 (DNA excision repair protein ERCC-1 OS=Homo sapiens OX=9606 GN=ERCC1 PE=1 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.6e-63
Identity = 131/259 (50.58%), Postives = 173/259 (66.80%), Query Frame = 0


Query: 94  KSTEFYSPPPQPVPASPSQSLPDSDITNPRKNDQLDTPCSSTSASAATPANRLSASSSVT 153
           +ST+          A+P Q+  +  I+ P +      P  S   +  TP   L   +   
Sbjct: 41  RSTQSLPTVDTSAQAAP-QTYAEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAK-- 100

Query: 154 RNAILVSNRQRGNPLLKHIRNVRWTFADVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRI 213
            N+I+VS RQRGNP+LK +RNV W F DV+PDY+LG S+CAL+LSLRYH LHPDY++ R+
Sbjct: 101 SNSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRL 160

Query: 214 RELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYEN 273
           + L KNF LRV+L  VDV+D  + L E+ K  +L DCTL+ AWS EE GRYLET K YE 
Sbjct: 161 QSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQ 220

Query: 274 KPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFGSLSHVMDASMEDLARCPGI 333
           KPADL+  +++ D++SR+T  LT+V+ VNKTD  TL TTFGSL  ++ AS EDLA CPG+
Sbjct: 221 KPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGL 280

Query: 334 GERKVRRLYDTFHEPFKRV 353
           G +K RRL+D  HEPF +V
Sbjct: 281 GPQKARRLFDVLHEPFLKV 296

[Close]

BLAST of Carg27818 vs. ExPASy Swiss-Prot
Match: Q1LZ75 (DNA excision repair protein ERCC-1 OS=Bos taurus OX=9913 GN=ERCC1 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.5e-63
Identity = 135/302 (44.70%), Postives = 192/302 (63.58%), Query Frame = 0


Query: 51  EEENLQQTAHKKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPASP 110
           +EE + + A    +    IP+ ++V+    P ++   ++   L + E  SPPP P     
Sbjct: 2   DEEGVHKPAGPPTRKKFLIPTDEDVV--PPPGAKPLFRSTRSLPTVE-TSPPPGP----- 61

Query: 111 SQSLPDSDITNPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLK 170
            Q+  +  ++ P    +   P      +  TP    +       N+I+VS RQRGNP+L+
Sbjct: 62  -QTYAEYALSGPPGGAEATRPVGPEPLAEETP--NQAPKPGAKSNSIIVSPRQRGNPVLR 121

Query: 171 HIRNVRWTFADVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVD 230
            +RNV W F DV+PDY+LG S+CAL+LSLRYH LHPDY++ R++ L K++ LRV+L  VD
Sbjct: 122 FVRNVPWEFGDVLPDYVLGQSTCALFLSLRYHNLHPDYIHQRLQSLGKSYALRVLLVQVD 181

Query: 231 VEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSR 290
           V+D  + L E+ K  +L DCTL+ AWS EE GRYLET K YE KPADL+  +++ D++SR
Sbjct: 182 VKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSR 241

Query: 291 LTHVLTSVRHVNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFK 350
           +T  LT+V+ VNKTD  TL TTFGSL  ++ AS EDL+ CPG+G +K RRL+D FHEPF 
Sbjct: 242 VTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLSLCPGLGPQKARRLFDVFHEPFL 292

Query: 351 RV 353
           +V
Sbjct: 302 KV 292

[Close]

BLAST of Carg27818 vs. ExPASy Swiss-Prot
Match: P07903 (DNA excision repair protein ERCC-1 OS=Mus musculus OX=10090 GN=Ercc1 PE=2 SV=2)

HSP 1 Score: 242.7 bits (618), Expect = 7.9e-63
Identity = 136/304 (44.74%), Postives = 184/304 (60.53%), Query Frame = 0


Query: 49  GDEEENLQQTAHKKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPA 108
           G +EE+  Q +    +    IP  +E +  +  K    S     + +T  +  P      
Sbjct: 4   GKDEESRPQPSGPPTRRKFVIPLEEEEVPCAGVKPLFRSSRNPTIPATSAHVAP------ 63

Query: 109 SPSQSLPDSDITNPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPL 168
              Q+  +  IT P        P  S  A+   P+  L   +    N+I+VS RQRGNP+
Sbjct: 64  ---QTYAEYAITQPPGGAGATVPTGSEPAAGENPSQTLKTGAK--SNSIIVSPRQRGNPV 123

Query: 169 LKHIRNVRWTFADVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCH 228
           LK +RNV W F +V+PDY+LG S+CAL+LSLRYH LHPDY++ R++ L KNF LRV+L  
Sbjct: 124 LKFVRNVPWEFGEVIPDYVLGQSTCALFLSLRYHNLHPDYIHERLQSLGKNFALRVLLVQ 183

Query: 229 VDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYL 288
           VDV+D  + L E+ K  +L DCTL+ AWS EE GRYLET K YE KPADL+  +++ ++L
Sbjct: 184 VDVKDPQQALKELAKMCILADCTLVLAWSAEEAGRYLETYKAYEQKPADLLMEKLEQNFL 243

Query: 289 SRLTHVLTSVRHVNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEP 348
           SR T  LT+V+ VNKTD  TL  TFGSL  +  AS EDLA CPG+G +K RRL++  HEP
Sbjct: 244 SRATECLTTVKSVNKTDSQTLLATFGSLEQLFTASREDLALCPGLGPQKARRLFEVLHEP 296

Query: 349 FKRV 353
           F +V
Sbjct: 304 FLKV 296

[Close]

BLAST of Carg27818 vs. ExPASy Swiss-Prot
Match: Q06182 (Mating-type switching protein swi10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=swi10 PE=1 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-48
Identity = 94/200 (47.00%), Postives = 137/200 (68.50%), Query Frame = 0


Query: 150 SSVTRNAILVSNRQRGNPLLKHIRNVRWTFADVVPDYLLGNSSCALYLSLRYHLLHPDYL 209
           S VT ++ILV+ RQ+GNPLL H+RNV W + D+VPD+++G   C+L+LSL+YH LHP+Y+
Sbjct: 36  SRVTAHSILVNPRQKGNPLLPHVRNVPWEYTDIVPDFVMGTGICSLFLSLKYHHLHPEYI 95

Query: 210 YYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIK 269
           Y RI +L K++ LR++L  VDVE+    + E+ KT++++  TL+ AWS EE  RYLET K
Sbjct: 96  YSRISKLGKSYNLRILLILVDVENHQASIQELVKTSIVNQYTLILAWSSEEAARYLETYK 155

Query: 270 VYENKPADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFGSLSHVMDASMEDLAR 329
            YEN    LI  +  TDYLS++   LTS+R +NK+D ++L + FGSL   + AS ++L +
Sbjct: 156 AYENMSPALIMEKPSTDYLSQVQSFLTSIRGINKSDSLSLLSKFGSLERALVASRDELEQ 215

Query: 330 CPGIGERKVRRLYDTFHEPF 350
             G G  KV R  +   +PF
Sbjct: 216 LEGWGPTKVNRFLEAVQQPF 235

[Close]

BLAST of Carg27818 vs. ExPASy TrEMBL
Match: A0A6J1HED7 (DNA excision repair protein ERCC-1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462101 PE=3 SV=1)

HSP 1 Score: 835.1 bits (2156), Expect = 1.3e-238
Identity = 426/432 (98.61%), Postives = 430/432 (99.54%), Query Frame = 0


Query: 1   MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH 60
           MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH
Sbjct: 1   MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH 60

Query: 61  KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPASPSQSLPDSDIT 120
           KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPAS SQSLPDSDIT
Sbjct: 61  KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPASSSQSLPDSDIT 120

Query: 121 NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA 180
           NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA
Sbjct: 121 NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA 180

Query: 181 DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE 240
           DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE
Sbjct: 181 DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE 240

Query: 241 VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRH 300
           VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRH
Sbjct: 241 VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRH 300

Query: 301 VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHPAVL 360
           VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHP+VL
Sbjct: 301 VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHPSVL 360

Query: 361 ETPTQNNTEPRSVGEEQDVDGKNTEDASQHKKEPELNIKSALSAAFAKYSAKIGKSSKPE 420
           ETPTQN+TEPRS+ EEQDVDGKNTEDASQHKKEPEL+IKSALSAAFAKYSAKIGKSSKPE
Sbjct: 361 ETPTQNSTEPRSIREEQDVDGKNTEDASQHKKEPELSIKSALSAAFAKYSAKIGKSSKPE 420

Query: 421 GEEKEPENSNSQ 433
           GEEKEPENSNSQ
Sbjct: 421 GEEKEPENSNSQ 432

[Close]

BLAST of Carg27818 vs. ExPASy TrEMBL
Match: A0A6J1HCJ5 (DNA excision repair protein ERCC-1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462101 PE=3 SV=1)

HSP 1 Score: 791.2 bits (2042), Expect = 2.2e-225
Identity = 409/432 (94.68%), Postives = 413/432 (95.60%), Query Frame = 0


Query: 1   MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH 60
           MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH
Sbjct: 1   MCHRNWVDSAILPSSIAEGRKKHIRNSFQRFNFRSSKETYPCKIMEQQGDEEENLQQTAH 60

Query: 61  KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPASPSQSLPDSDIT 120
           KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPAS SQSLPDSDIT
Sbjct: 61  KKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPVPASSSQSLPDSDIT 120

Query: 121 NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA 180
           NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA
Sbjct: 121 NPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGNPLLKHIRNVRWTFA 180

Query: 181 DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE 240
           DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE
Sbjct: 181 DVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLE 240

Query: 241 VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHVLTSVRH 300
           VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQ                 VRH
Sbjct: 241 VTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQ-----------------VRH 300

Query: 301 VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHPAVL 360
           VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHP+VL
Sbjct: 301 VNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHPSVL 360

Query: 361 ETPTQNNTEPRSVGEEQDVDGKNTEDASQHKKEPELNIKSALSAAFAKYSAKIGKSSKPE 420
           ETPTQN+TEPRS+ EEQDVDGKNTEDASQHKKEPEL+IKSALSAAFAKYSAKIGKSSKPE
Sbjct: 361 ETPTQNSTEPRSIREEQDVDGKNTEDASQHKKEPELSIKSALSAAFAKYSAKIGKSSKPE 415

Query: 421 GEEKEPENSNSQ 433
           GEEKEPENSNSQ
Sbjct: 421 GEEKEPENSNSQ 415

[Close]

BLAST of Carg27818 vs. ExPASy TrEMBL
Match: A0A6J1HYZ8 (DNA excision repair protein ERCC-1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467887 PE=3 SV=1)

HSP 1 Score: 722.6 bits (1864), Expect = 9.6e-205
Identity = 377/387 (97.42%), Postives = 379/387 (97.93%), Query Frame = 0


Query: 47  QQGDEEENLQQT-AHKKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQP 106
           +QGDEEENLQQT AHKKMKTIIKI SYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQP
Sbjct: 2   EQGDEEENLQQTAAHKKMKTIIKISSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQP 61

Query: 107 VPASPSQSLPDSDITNPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRG 166
           VPAS SQSLPDSDITNPRKNDQLDT CSSTSASAATPAN LSASSSVTRNAILVSNRQRG
Sbjct: 62  VPASSSQSLPDSDITNPRKNDQLDTSCSSTSASAATPANSLSASSSVTRNAILVSNRQRG 121

Query: 167 NPLLKHIRNVRWTFADVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVV 226
           NPLLKHIRNVRWTFADVVPDYLLG SSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVV
Sbjct: 122 NPLLKHIRNVRWTFADVVPDYLLGRSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVV 181

Query: 227 LCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDT 286
           LCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDT
Sbjct: 182 LCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDT 241

Query: 287 DYLSRLTHVLTSVRHVNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTF 346
           DYLSRLTHVLTSVRHVNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTF
Sbjct: 242 DYLSRLTHVLTSVRHVNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTF 301

Query: 347 HEPFKRVVSTHPAVLETPTQNNTEPRSVGEEQDVDGKNTEDASQHKKEPELNIKSALSAA 406
           HEPFKRVVSTHPAVLETPTQNNTEPR VGEEQDVDGK+TEDASQHKKEPELNIKSALSAA
Sbjct: 302 HEPFKRVVSTHPAVLETPTQNNTEPRLVGEEQDVDGKSTEDASQHKKEPELNIKSALSAA 361

Query: 407 FAKYSAKIGKSSKPEGEEKEPENSNSQ 433
           FAKYSAKIGKSSKPEGEEKE ENSNSQ
Sbjct: 362 FAKYSAKIGKSSKPEGEEKEHENSNSQ 388

[Close]

BLAST of Carg27818 vs. ExPASy TrEMBL
Match: A0A6J1I0J7 (DNA excision repair protein ERCC-1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467887 PE=3 SV=1)

HSP 1 Score: 678.3 bits (1749), Expect = 2.1e-191
Identity = 360/387 (93.02%), Postives = 362/387 (93.54%), Query Frame = 0


Query: 47  QQGDEEENLQQT-AHKKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQP 106
           +QGDEEENLQQT AHKKMKTIIKI SYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQP
Sbjct: 2   EQGDEEENLQQTAAHKKMKTIIKISSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQP 61

Query: 107 VPASPSQSLPDSDITNPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRG 166
           VPAS SQSLPDSDITNPRKNDQLDT CSSTSASAATPAN LSASSSVTRNAILVSNRQRG
Sbjct: 62  VPASSSQSLPDSDITNPRKNDQLDTSCSSTSASAATPANSLSASSSVTRNAILVSNRQRG 121

Query: 167 NPLLKHIRNVRWTFADVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVV 226
           NPLLKHIRNVRWTFADVVPDYLLG SSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVV
Sbjct: 122 NPLLKHIRNVRWTFADVVPDYLLGRSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVV 181

Query: 227 LCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDT 286
           LCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQ     
Sbjct: 182 LCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQ----- 241

Query: 287 DYLSRLTHVLTSVRHVNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTF 346
                       VRHVNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTF
Sbjct: 242 ------------VRHVNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTF 301

Query: 347 HEPFKRVVSTHPAVLETPTQNNTEPRSVGEEQDVDGKNTEDASQHKKEPELNIKSALSAA 406
           HEPFKRVVSTHPAVLETPTQNNTEPR VGEEQDVDGK+TEDASQHKKEPELNIKSALSAA
Sbjct: 302 HEPFKRVVSTHPAVLETPTQNNTEPRLVGEEQDVDGKSTEDASQHKKEPELNIKSALSAA 361

Query: 407 FAKYSAKIGKSSKPEGEEKEPENSNSQ 433
           FAKYSAKIGKSSKPEGEEKE ENSNSQ
Sbjct: 362 FAKYSAKIGKSSKPEGEEKEHENSNSQ 371

[Close]

BLAST of Carg27818 vs. ExPASy TrEMBL
Match: A0A1S3CIE0 (DNA excision repair protein ERCC-1 OS=Cucumis melo OX=3656 GN=LOC103501314 PE=3 SV=1)

HSP 1 Score: 645.2 bits (1663), Expect = 1.9e-181
Identity = 338/389 (86.89%), Postives = 354/389 (91.00%), Query Frame = 0


Query: 47  QQGDEEENLQQTAHKKMKTIIKIPSYQEVIDSSQPKSQSFSQAFAFLKSTEFYSPPPQPV 106
           ++G  EEN QQT HKK KTIIKIPSYQEV DSSQPKSQSFSQAFAFLKS+EFYSPPP+P 
Sbjct: 2   EEGSAEENFQQTPHKKSKTIIKIPSYQEVFDSSQPKSQSFSQAFAFLKSSEFYSPPPKPP 61

Query: 107 PASPSQSLPDSDITNPRKNDQLDTPCSSTSASAATPANRLSASSSVTRNAILVSNRQRGN 166
             S SQSLP S+ITNPRKNDQLDT  SSTSAS ATP N LS SSSV+RNAILVSNRQ+GN
Sbjct: 62  SPSSSQSLPASNITNPRKNDQLDTSSSSTSASTATPVNSLSVSSSVSRNAILVSNRQKGN 121

Query: 167 PLLKHIRNVRWTFADVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVL 226
           PLLKHIRNVRW FADVVPDYLLG SSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVL
Sbjct: 122 PLLKHIRNVRWAFADVVPDYLLGQSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVL 181

Query: 227 CHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTD 286
           CHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTD
Sbjct: 182 CHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDTD 241

Query: 287 YLSRLTHVLTSVRHVNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIGERKVRRLYDTFH 346
           YLSRLTHVLTSVRHVNKTDVVTLGTTFGSLSH+MDASMEDLARCPGIGERKVRRLYDTFH
Sbjct: 242 YLSRLTHVLTSVRHVNKTDVVTLGTTFGSLSHIMDASMEDLARCPGIGERKVRRLYDTFH 301

Query: 347 EPFKRVVSTHPAVLETPTQNNTEPRSVGEEQDVDGKN-TEDASQHKKEPELNIKSALSAA 406
           EPFKR+VSTHPAV ETPTQN+T+PRS+ EEQDVDGK   ED SQHKKEP+LN+KSALSAA
Sbjct: 302 EPFKRIVSTHPAVPETPTQNSTKPRSINEEQDVDGKRIEEDGSQHKKEPKLNVKSALSAA 361

Query: 407 FAKYSAKIGKSSK--PEGEEKEPENSNSQ 433
           FAKY+ KI KSS    E E  EPE+SN Q
Sbjct: 362 FAKYADKIAKSSSMPQEKEIGEPESSNVQ 390

[Close]

BLAST of Carg27818 vs. TAIR 10
Match: AT3G05210.1 (nucleotide repair protein, putative )

HSP 1 Score: 454.5 bits (1168), Expect = 9.4e-128
Identity = 244/403 (60.55%), Postives = 302/403 (74.94%), Query Frame = 0


Query: 46  EQQGDEEENLQQTAHKKMKT--IIKIPSYQEVIDSSQPK---------SQSFSQAFAFLK 105
           +  G++  +L Q   +K KT  +I +PSYQEV++SSQ K         SQSFSQAFAF+K
Sbjct: 5   DDDGEKSRSLHQQIARKPKTQIVIGVPSYQEVLESSQTKSTPPSLFKPSQSFSQAFAFVK 64

Query: 106 STEFYSPPPQPVPASPSQSLPDSDITNPRKNDQLDTPCSSTSASAATPANRLSASSSVTR 165
           S++ YSPPP P  A+ S S P      P  + Q      ++S+S       + ++++  R
Sbjct: 65  SSDVYSPPP-PSSAAASSSQPSGASQVPHSSSQTHQTDGASSSSTPVATGSVPSNTTQNR 124

Query: 166 NAILVSNRQRGNPLLKHIRNVRWTFADVVPDYLLGNSSCALYLSLRYHLLHPDYLYYRIR 225
           NAILVS+RQ+GNPLLKHIRNV+W F+D++PDY+LG +SCALYLSLRYHLLHPDYLY+RIR
Sbjct: 125 NAILVSHRQKGNPLLKHIRNVKWVFSDIIPDYVLGQNSCALYLSLRYHLLHPDYLYFRIR 184

Query: 226 ELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENK 285
           ELQKNFKL VVLCHVDVED VKPLLEVTKTALLHDCTLLCAWS+ EC RYLETIKVYENK
Sbjct: 185 ELQKNFKLSVVLCHVDVEDTVKPLLEVTKTALLHDCTLLCAWSMTECARYLETIKVYENK 244

Query: 286 PADLIQGQMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFGSLSHVMDASMEDLARCPGIG 345
           PADLIQGQMDTDYLSRL H LTS+RHVNK+DVVTLG+TFGSL+H++DASMEDLARCPGIG
Sbjct: 245 PADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIIDASMEDLARCPGIG 304

Query: 346 ERKVRRLYDTFHEPFKRVVSTHPAVLETPTQNNTEPRSVGEEQDV--DGKNTEDASQHKK 405
           ERKV+RLYDTFHEPFKR  S++P+V+E P       + V  E+ V  D    ED+ + KK
Sbjct: 305 ERKVKRLYDTFHEPFKRATSSYPSVVEPPIPEAPVEKDVNSEEPVEEDEDFVEDSRKRKK 364

Query: 406 ---EPELNIKSALSAAFAKYSAKIGKSSKPEGEEKEPENSNSQ 433
              EPE  +K+ALSA FA+YS ++ K  + + E+     S+++
Sbjct: 365 KEPEPEKTVKTALSAVFARYSDRLSKKKEKQKEKDTTTASDAE 406

The following BLAST results are available for this feature:

BLAST of Carg27818 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023940.1	9.1e-242	100.00	DNA excision repair protein ERCC-1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6590378.1	2.0e-241	99.77	DNA excision repair protein ERCC-1, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022961554.1	2.7e-238	98.61	DNA excision repair protein ERCC-1 isoform X1 [Cucurbita moschata]	[more]
XP_022961555.1	4.5e-225	94.68	DNA excision repair protein ERCC-1 isoform X2 [Cucurbita moschata]	[more]
XP_023516191.1	2.7e-209	98.20	DNA excision repair protein ERCC-1 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg27818 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9MA98	1.3e-126	60.55	DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana OX=3702 GN=ERCC1 PE=2...	[more]
P07992	1.6e-63	50.58	DNA excision repair protein ERCC-1 OS=Homo sapiens OX=9606 GN=ERCC1 PE=1 SV=1	[more]
Q1LZ75	3.5e-63	44.70	DNA excision repair protein ERCC-1 OS=Bos taurus OX=9913 GN=ERCC1 PE=2 SV=1	[more]
P07903	7.9e-63	44.74	DNA excision repair protein ERCC-1 OS=Mus musculus OX=10090 GN=Ercc1 PE=2 SV=2	[more]
Q06182	1.9e-48	47.00	Mating-type switching protein swi10 OS=Schizosaccharomyces pombe (strain 972 / A...	[more]

BLAST of Carg27818 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HED7	1.3e-238	98.61	DNA excision repair protein ERCC-1 isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HCJ5	2.2e-225	94.68	DNA excision repair protein ERCC-1 isoform X2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HYZ8	9.6e-205	97.42	DNA excision repair protein ERCC-1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1I0J7	2.1e-191	93.02	DNA excision repair protein ERCC-1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A1S3CIE0	1.9e-181	86.89	DNA excision repair protein ERCC-1 OS=Cucumis melo OX=3656 GN=LOC103501314 PE=3 ...	[more]

BLAST of Carg27818 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05210.1	9.4e-128	60.55	nucleotide repair protein, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004579	ERCC1/RAD10/SWI10 family	TIGRFAM	TIGR00597	TIGR00597	coord: 155..266 e-value: 1.8E-43 score: 145.0
IPR004579	ERCC1/RAD10/SWI10 family	PFAM	PF03834	Rad10	coord: 157..269 e-value: 9.6E-44 score: 148.0
IPR004579	ERCC1/RAD10/SWI10 family	PANTHER	PTHR12749	EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1	coord: 63..356
None	No IPR available	GENE3D	3.40.50.10130		coord: 155..269 e-value: 2.6E-49 score: 167.7
None	No IPR available	GENE3D	1.10.150.20		coord: 270..358 e-value: 5.0E-33 score: 114.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 373..397
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 356..399
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 358..372
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 415..432
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 412..432
IPR010994	RuvA domain 2-like	SUPERFAMILY	47781	RuvA domain 2-like	coord: 243..349
IPR011335	Restriction endonuclease type II-like	SUPERFAMILY	52980	Restriction endonuclease-like	coord: 155..281

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27818-RA	Carg27818-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000710	meiotic mismatch repair
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0006296	nucleotide-excision repair, DNA incision, 5'-to lesion
biological_process	GO:0070914	UV-damage excision repair
biological_process	GO:0006281	DNA repair
cellular_component	GO:0070522	ERCC4-ERCC1 complex
cellular_component	GO:0000110	nucleotide-excision repair factor 1 complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0003697	single-stranded DNA binding