Carg27789 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27789
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ATP synthase subunit delta, chloroplastic-like
Location	Carg_Chr01: 6278106 .. 6278828 (-)
RNA-Seq Expression	Carg27789
Synteny	Carg27789

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCCTTCACCAAACCGCCGCTTCTCTCCAGGCCAAGCTCCTTCCAACCATTCGAATCTCCCGAACCACACCTGCAAACCTCTCCTTCTCCGCTACTTTTCCTTCTCGCCGACTCCGCCTCGGCCACCTCCGCTCTCACGCCGCCACTAAAATGTCCACCAGTGCCGCCGGGAGCTACGCTGCTGCGCTCGCGGAAGTCGCCGCCTCAAACGACACGCTCGAGGTCACAAGCGCGGATGTGGAGAAAATCGAGAGCGTGTTCGCGGATCCGCAGTTGTTCGATTTCTTCGCGAATCCGACGATTAAGGTCGAGAGGAAACTGGAGGTGGTTGATGAGATCGCTTCGTCGTTGTCTCTACAGCCGCATACGGAAAATTTCTTGAAGATCCTGGTGGACGCGAAGAGGATCGACATCGTGAAGGAGATCGTGACGGAGTTCGAAACAGTGTACAACAAATTGACGAACACGGAACTTGCGGTGGTGAGTTCGGTTGTGGAATTGGAGGAGCAGCATTTGACGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCGAAGAATGTGAGGATCAAGACGCAGATTGATCCAAGTCTTGTGGCTGGATTCACTGTGAGGTTTGGAAATTCTGGATCGAAACTCATTGATTTGAGCGTTAAGAAGCAGCTTGAGGAAATCGCTACTCAGCTTGATCTCGGCAACATTCAACTGACGGTATAA

mRNA sequence

ATGGCCGCCCTTCACCAAACCGCCGCTTCTCTCCAGGCCAAGCTCCTTCCAACCATTCGAATCTCCCGAACCACACCTGCAAACCTCTCCTTCTCCGCTACTTTTCCTTCTCGCCGACTCCGCCTCGGCCACCTCCGCTCTCACGCCGCCACTAAAATGTCCACCAGTGCCGCCGGGAGCTACGCTGCTGCGCTCGCGGAAGTCGCCGCCTCAAACGACACGCTCGAGGTCACAAGCGCGGATGTGGAGAAAATCGAGAGCGTGTTCGCGGATCCGCAGTTGTTCGATTTCTTCGCGAATCCGACGATTAAGGTCGAGAGGAAACTGGAGGTGGTTGATGAGATCGCTTCGTCGTTGTCTCTACAGCCGCATACGGAAAATTTCTTGAAGATCCTGGTGGACGCGAAGAGGATCGACATCGTGAAGGAGATCGTGACGGAGTTCGAAACAGTGTACAACAAATTGACGAACACGGAACTTGCGGTGGTGAGTTCGGTTGTGGAATTGGAGGAGCAGCATTTGACGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCGAAGAATGTGAGGATCAAGACGCAGATTGATCCAAGTCTTGTGGCTGGATTCACTGTGAGGTTTGGAAATTCTGGATCGAAACTCATTGATTTGAGCGTTAAGAAGCAGCTTGAGGAAATCGCTACTCAGCTTGATCTCGGCAACATTCAACTGACGGTATAA

Coding sequence (CDS)

ATGGCCGCCCTTCACCAAACCGCCGCTTCTCTCCAGGCCAAGCTCCTTCCAACCATTCGAATCTCCCGAACCACACCTGCAAACCTCTCCTTCTCCGCTACTTTTCCTTCTCGCCGACTCCGCCTCGGCCACCTCCGCTCTCACGCCGCCACTAAAATGTCCACCAGTGCCGCCGGGAGCTACGCTGCTGCGCTCGCGGAAGTCGCCGCCTCAAACGACACGCTCGAGGTCACAAGCGCGGATGTGGAGAAAATCGAGAGCGTGTTCGCGGATCCGCAGTTGTTCGATTTCTTCGCGAATCCGACGATTAAGGTCGAGAGGAAACTGGAGGTGGTTGATGAGATCGCTTCGTCGTTGTCTCTACAGCCGCATACGGAAAATTTCTTGAAGATCCTGGTGGACGCGAAGAGGATCGACATCGTGAAGGAGATCGTGACGGAGTTCGAAACAGTGTACAACAAATTGACGAACACGGAACTTGCGGTGGTGAGTTCGGTTGTGGAATTGGAGGAGCAGCATTTGACGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCGAAGAATGTGAGGATCAAGACGCAGATTGATCCAAGTCTTGTGGCTGGATTCACTGTGAGGTTTGGAAATTCTGGATCGAAACTCATTGATTTGAGCGTTAAGAAGCAGCTTGAGGAAATCGCTACTCAGCTTGATCTCGGCAACATTCAACTGACGGTATAA

Protein sequence

MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGSYAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLSLQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV

Homology

[Close]

BLAST of Carg27789 vs. NCBI nr
Match: XP_022932114.1 (ATP synthase subunit delta, chloroplastic-like [Cucurbita moschata] >KAG7037203.1 ATP synthase subunit delta, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 435.3 bits (1118), Expect = 3.5e-118
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS 60
           MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS
Sbjct: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS 60

Query: 61  YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLS 120
           YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLS
Sbjct: 61  YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLS 120

Query: 121 LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ 180
           LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ
Sbjct: 121 LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV 240

[Close]

BLAST of Carg27789 vs. NCBI nr
Match: KAG6607578.1 (ATP synthase subunit delta, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 434.1 bits (1115), Expect = 7.8e-118
Identity = 239/240 (99.58%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS 60
           MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS
Sbjct: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS 60

Query: 61  YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLS 120
           YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLS
Sbjct: 61  YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLS 120

Query: 121 LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ 180
           LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ
Sbjct: 121 LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLT+
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTL 240

[Close]

BLAST of Carg27789 vs. NCBI nr
Match: XP_022972892.1 (ATP synthase subunit delta, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 432.6 bits (1111), Expect = 2.3e-117
Identity = 238/240 (99.17%), Postives = 239/240 (99.58%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS 60
           MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS
Sbjct: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS 60

Query: 61  YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLS 120
           YA ALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVE+KLEVVDEIASSLS
Sbjct: 61  YATALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVEKKLEVVDEIASSLS 120

Query: 121 LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ 180
           LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ
Sbjct: 121 LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV 240

[Close]

BLAST of Carg27789 vs. NCBI nr
Match: XP_023525956.1 (ATP synthase subunit delta, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 431.0 bits (1107), Expect = 6.6e-117
Identity = 238/240 (99.17%), Postives = 239/240 (99.58%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS 60
           MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRS AATKMSTSAAGS
Sbjct: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSQAATKMSTSAAGS 60

Query: 61  YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLS 120
           YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVE+KLEVVDEIASSLS
Sbjct: 61  YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVEKKLEVVDEIASSLS 120

Query: 121 LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ 180
           LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ
Sbjct: 121 LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV 240

[Close]

BLAST of Carg27789 vs. NCBI nr
Match: XP_038884002.1 (ATP synthase subunit delta, chloroplastic [Benincasa hispida])

HSP 1 Score: 386.3 bits (991), Expect = 1.9e-103
Identity = 211/240 (87.92%), Postives = 224/240 (93.33%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS 60
           MAALHQTAASLQAKLLPTIRISRTTP NLSFSATFPSR LRLGH RSH   KMS +AAGS
Sbjct: 1   MAALHQTAASLQAKLLPTIRISRTTPVNLSFSATFPSRSLRLGHHRSHGGAKMSATAAGS 60

Query: 61  YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLS 120
           YAAALAEVAASN+TL+ TS+DVEKIESVFAD Q+FDFFANPTI VE+KLEVVDEIA+S S
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADSQVFDFFANPTIGVEKKLEVVDEIATSSS 120

Query: 121 LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ 180
           LQPH+ NFLKILVDAKRIDI+KEIVTEFE VYNK+TNTELAVVSSVV+LE+QHL QIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA Q+DLGNIQL V
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQIDLGNIQLAV 240

[Close]

BLAST of Carg27789 vs. ExPASy Swiss-Prot
Match: Q9SSS9 (ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATPD PE=1 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.0e-67
Identity = 148/239 (61.92%), Postives = 185/239 (77.41%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLP-TIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAG 60
           MA+L QT  SLQ+KL P + +I+R+ P       TFP   +R+ +  + A  +MS +AA 
Sbjct: 1   MASLQQTLFSLQSKLPPSSFQIARSLP----LRKTFP---IRINNGGNAAGARMSATAAS 60

Query: 61  SYAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSL 120
           SYA ALA+VA  NDT+E+T  D+EK+E VF+DPQ+ +FFANPTI VE+K +V+D+I  S 
Sbjct: 61  SYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSS 120

Query: 121 SLQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAK 180
           SLQ HT NFL +LVDA RI+IV EIV EFE VYNKLT+T+LA V SVV+LE   L QIAK
Sbjct: 121 SLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAK 180

Query: 181 QVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQL 239
           QVQKL+GAKNVR+KT ID SLVAGFT+R+G SGSKLID+SVKKQLE+IA+QL+LG IQL
Sbjct: 181 QVQKLTGAKNVRVKTVIDASLVAGFTIRYGESGSKLIDMSVKKQLEDIASQLELGEIQL 232

[Close]

BLAST of Carg27789 vs. ExPASy Swiss-Prot
Match: P32980 (ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum OX=4097 GN=ATPD PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.2e-65
Identity = 147/249 (59.04%), Postives = 184/249 (73.90%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSH---------AAT 60
           MAAL QT  + Q++  P  +I     A LSFS      +L +  LRS+         A +
Sbjct: 1   MAALQQTPITFQSRSPPPTQIISGPTAKLSFSGGLKLPKLTI-KLRSNRTSRRGGGAAGS 60

Query: 61  KMSTSAAGSYAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEV 120
           KM  SAAGSYA ALA++A SN TLE T+AD+EKIE +  D  +F+FF +P +  E+K E+
Sbjct: 61  KMVASAAGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKREL 120

Query: 121 VDEIASSLSLQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEE 180
           VDEI SS S+QPH  NFL ILVD KR++++KEIV EFE VYN LT+TELAVV+SVV+LE 
Sbjct: 121 VDEIVSSSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLES 180

Query: 181 QHLTQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQL 240
           QHL QIAK VQ+L+G+KNVRIKT ID SLVAGFT+R+GNSGSKLID+SVKKQLE+IA QL
Sbjct: 181 QHLAQIAKGVQRLTGSKNVRIKTVIDESLVAGFTIRYGNSGSKLIDMSVKKQLEDIAAQL 240

[Close]

BLAST of Carg27789 vs. ExPASy Swiss-Prot
Match: Q02758 (ATP synthase delta chain, chloroplastic OS=Pisum sativum OX=3888 GN=ATPD PE=1 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.4e-61
Identity = 134/251 (53.39%), Postives = 187/251 (74.50%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLP--TIRISRTTPANLSFSATFPSR---RLRLGHLRSHAAT---- 60
           MA+L  T ASL +K +P  T  ++R    NLS S  +  +   +L+L   ++  +T    
Sbjct: 1   MASLQHTTASLHSKHIPKTTNILTRKPILNLSSSTFYSPKLKLKLKLPLTKTRRSTGGAL 60

Query: 61  --KMSTSAAGSYAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKL 120
             +MS+ AAGSYAAALA++A SN+TL+  +AD +KIE +F+DP++FD+F++P ++   K 
Sbjct: 61  GARMSSLAAGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTKR 120

Query: 121 EVVDEIASSLSLQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVEL 180
           +++ E A++   QPHT NFL +L+D+KRID++ +I+ EFE VYN LT+TEL VV+SVV+L
Sbjct: 121 QLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVKL 180

Query: 181 EEQHLTQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAT 240
           E  HL QIAKQVQKL+GAK VR KT +DPSLVAGFTVR+GN+GSK ID+SVK++LEEIA 
Sbjct: 181 ESHHLAQIAKQVQKLTGAKKVRTKTLLDPSLVAGFTVRYGNTGSKFIDMSVKRKLEEIAA 240

[Close]

BLAST of Carg27789 vs. ExPASy Swiss-Prot
Match: P11402 (ATP synthase delta chain, chloroplastic OS=Spinacia oleracea OX=3562 GN=ATPD PE=1 SV=2)

HSP 1 Score: 223.4 bits (568), Expect = 2.7e-57
Identity = 130/249 (52.21%), Postives = 173/249 (69.48%), Query Frame = 0


Query: 3   ALHQTAASLQAKLLPTIRISRTTPANLSFS---ATFPSRRLRLGHLRSHAA--------T 62
           AL     +  A L  +   S   P +LSFS   ATF   RL++       A        T
Sbjct: 9   ALQSRTTTAVAALSTSSTTSTPKPFSLSFSSSTATFNPLRLKILTASKLTAKPRGGALGT 68

Query: 63  KMSTSAAGSYAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEV 122
           +M  S A  YA+ALA+VA    TLE T++DVEK+  +F++  ++ FFANP I ++ K  V
Sbjct: 69  RMVDSTASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSV 128

Query: 123 VDEIASSLSLQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEE 182
           +DEI ++  LQPHT NF+ IL+D++RI++VKEI+ EFE V+NK+T TE+AVV+SVV+LE 
Sbjct: 129 LDEIITTSGLQPHTANFINILIDSERINLVKEILNEFEDVFNKITGTEVAVVTSVVKLEN 188

Query: 183 QHLTQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQL 241
            HL QIAK VQK++GAKNVRIKT IDPSLVAGFT+R+GN GSKL+D+SVKKQLEEIA QL
Sbjct: 189 DHLAQIAKGVQKITGAKNVRIKTVIDPSLVAGFTIRYGNEGSKLVDMSVKKQLEEIAAQL 248

[Close]

BLAST of Carg27789 vs. ExPASy Swiss-Prot
Match: Q07300 (ATP synthase delta chain, chloroplastic OS=Sorghum bicolor OX=4558 GN=ATPD PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.9e-50
Identity = 119/247 (48.18%), Postives = 163/247 (65.99%), Query Frame = 0


Query: 1   MAALHQTAASLQ-AKLLPTIRISRTTPA---NLSFSAT---FPSRRLRLGHLRSHAATKM 60
           MAAL   + +L+ A        S  TPA   + SF+      PS RL     R       
Sbjct: 1   MAALRLASFTLRPAAAAAASASSGATPAAPRSASFARAARGLPSLRLAPPRRRGDLVRPR 60

Query: 61  STSAAGSYAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVD 120
           + +AA SYA+AL+EVA  N TLE T +D+EK++ +FAD  + +FF NPT+  E K  ++D
Sbjct: 61  AEAAADSYASALSEVAVENGTLEQTVSDLEKLQKIFADETVAEFFDNPTVPREEKTALID 120

Query: 121 EIASSLSLQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQH 180
           EIA S  LQPH  NF+ ++VD  R  I+ EIV EFE ++N LT TE+A V+SVV+LE Q 
Sbjct: 121 EIAKSYELQPHVVNFINVVVDNFRATILPEIVVEFENIFNSLTGTEVATVTSVVQLESQD 180

Query: 181 LTQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDL 240
           L QIA+ VQK++GAKNVR+KTQ+DP L+AGFTV++G  GS LID+SV+KQ+EEI ++ +L
Sbjct: 181 LAQIAQHVQKMTGAKNVRLKTQLDPELIAGFTVQYGRDGSSLIDMSVRKQIEEITSEFEL 240

[Close]

BLAST of Carg27789 vs. ExPASy TrEMBL
Match: A0A6J1EW43 (ATP synthase subunit delta, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111438422 PE=3 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 1.7e-118
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS 60
           MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS
Sbjct: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS 60

Query: 61  YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLS 120
           YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLS
Sbjct: 61  YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLS 120

Query: 121 LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ 180
           LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ
Sbjct: 121 LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV 240

[Close]

BLAST of Carg27789 vs. ExPASy TrEMBL
Match: A0A6J1I621 (ATP synthase subunit delta, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111471401 PE=3 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 1.1e-117
Identity = 238/240 (99.17%), Postives = 239/240 (99.58%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS 60
           MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS
Sbjct: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS 60

Query: 61  YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLS 120
           YA ALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVE+KLEVVDEIASSLS
Sbjct: 61  YATALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVEKKLEVVDEIASSLS 120

Query: 121 LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ 180
           LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ
Sbjct: 121 LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV 240

[Close]

BLAST of Carg27789 vs. ExPASy TrEMBL
Match: A0A5A7T0I4 (ATP synthase subunit delta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00020 PE=3 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 4.2e-101
Identity = 207/240 (86.25%), Postives = 220/240 (91.67%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS 60
           MAALHQTAASLQAKLLPT RISRTTP NLSFSATFPSR LRLG  RSH   +MS +AAGS
Sbjct: 1   MAALHQTAASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLGQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLS 120
           YAAALAEVAASN+TL+ TS+DVEKIESVFADPQ+ DFF+NPTI VE+K  VVDEIASS S
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADPQVLDFFSNPTISVEKKQAVVDEIASSSS 120

Query: 121 LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ 180
           LQPH+ NFLKILVDAKRIDI+KEIVTEFE VYNK+TNTELAVVSSVV+LE+QHL QIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA QLDLGNIQL V
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]

BLAST of Carg27789 vs. ExPASy TrEMBL
Match: A0A1S3CIB5 (ATP synthase subunit delta, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501306 PE=3 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 4.2e-101
Identity = 207/240 (86.25%), Postives = 220/240 (91.67%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS 60
           MAALHQTAASLQAKLLPT RISRTTP NLSFSATFPSR LRLG  RSH   +MS +AAGS
Sbjct: 1   MAALHQTAASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLGQHRSHGGARMSATAAGS 60

Query: 61  YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLS 120
           YAAALAEVAASN+TL+ TS+DVEKIESVFADPQ+ DFF+NPTI VE+K  VVDEIASS S
Sbjct: 61  YAAALAEVAASNNTLDATSSDVEKIESVFADPQVLDFFSNPTISVEKKQAVVDEIASSSS 120

Query: 121 LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ 180
           LQPH+ NFLKILVDAKRIDI+KEIVTEFE VYNK+TNTELAVVSSVV+LE+QHL QIAKQ
Sbjct: 121 LQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA QLDLGNIQL V
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240

[Close]

BLAST of Carg27789 vs. ExPASy TrEMBL
Match: A0A6J1I8U4 (ATP synthase subunit delta, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111472044 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 5.5e-101
Identity = 208/240 (86.67%), Postives = 220/240 (91.67%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAGS 60
           MAA HQTAASLQAKLLPTIRISRTTPANLSFSATFPS RLRLG  RSH   +MS SAAGS
Sbjct: 1   MAAFHQTAASLQAKLLPTIRISRTTPANLSFSATFPSGRLRLGQHRSHGGARMSASAAGS 60

Query: 61  YAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSLS 120
           YAAALAEVAASN+TL+ TS DVEKIESVFAD Q+FD FANPTI +E+KL +VDEIA+S S
Sbjct: 61  YAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAASSS 120

Query: 121 LQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAKQ 180
           L PHT NFLKILVDAKRIDIVKEIVTEFE+VYNK+TNTELAVVSSVV LE+QHL QIAKQ
Sbjct: 121 LLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIAKQ 180

Query: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQLTV 240
           VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIA+QLDLGNIQL V
Sbjct: 181 VQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQLAV 240

[Close]

BLAST of Carg27789 vs. TAIR 10
Match: AT4G09650.1 (ATP synthase delta-subunit gene )

HSP 1 Score: 258.1 bits (658), Expect = 7.2e-69
Identity = 148/239 (61.92%), Postives = 185/239 (77.41%), Query Frame = 0


Query: 1   MAALHQTAASLQAKLLP-TIRISRTTPANLSFSATFPSRRLRLGHLRSHAATKMSTSAAG 60
           MA+L QT  SLQ+KL P + +I+R+ P       TFP   +R+ +  + A  +MS +AA 
Sbjct: 1   MASLQQTLFSLQSKLPPSSFQIARSLP----LRKTFP---IRINNGGNAAGARMSATAAS 60

Query: 61  SYAAALAEVAASNDTLEVTSADVEKIESVFADPQLFDFFANPTIKVERKLEVVDEIASSL 120
           SYA ALA+VA  NDT+E+T  D+EK+E VF+DPQ+ +FFANPTI VE+K +V+D+I  S 
Sbjct: 61  SYAMALADVAKRNDTMELTVTDIEKLEQVFSDPQVLNFFANPTITVEKKRQVIDDIVKSS 120

Query: 121 SLQPHTENFLKILVDAKRIDIVKEIVTEFETVYNKLTNTELAVVSSVVELEEQHLTQIAK 180
           SLQ HT NFL +LVDA RI+IV EIV EFE VYNKLT+T+LA V SVV+LE   L QIAK
Sbjct: 121 SLQSHTSNFLNVLVDANRINIVTEIVKEFELVYNKLTDTQLAEVRSVVKLEAPQLAQIAK 180

Query: 181 QVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIATQLDLGNIQL 239
           QVQKL+GAKNVR+KT ID SLVAGFT+R+G SGSKLID+SVKKQLE+IA+QL+LG IQL
Sbjct: 181 QVQKLTGAKNVRVKTVIDASLVAGFTIRYGESGSKLIDMSVKKQLEDIASQLELGEIQL 232

The following BLAST results are available for this feature:

BLAST of Carg27789 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932114.1	3.5e-118	100.00	ATP synthase subunit delta, chloroplastic-like [Cucurbita moschata] >KAG7037203....	[more]
KAG6607578.1	7.8e-118	99.58	ATP synthase subunit delta, chloroplastic, partial [Cucurbita argyrosperma subsp...	[more]
XP_022972892.1	2.3e-117	99.17	ATP synthase subunit delta, chloroplastic-like [Cucurbita maxima]	[more]
XP_023525956.1	6.6e-117	99.17	ATP synthase subunit delta, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_038884002.1	1.9e-103	87.92	ATP synthase subunit delta, chloroplastic [Benincasa hispida]	[more]

BLAST of Carg27789 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSS9	1.0e-67	61.92	ATP synthase subunit delta, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATP...	[more]
P32980	1.2e-65	59.04	ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum OX=4097 GN=ATPD PE=...	[more]
Q02758	1.4e-61	53.39	ATP synthase delta chain, chloroplastic OS=Pisum sativum OX=3888 GN=ATPD PE=1 SV...	[more]
P11402	2.7e-57	52.21	ATP synthase delta chain, chloroplastic OS=Spinacia oleracea OX=3562 GN=ATPD PE=...	[more]
Q07300	1.9e-50	48.18	ATP synthase delta chain, chloroplastic OS=Sorghum bicolor OX=4558 GN=ATPD PE=2 ...	[more]

BLAST of Carg27789 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EW43	1.7e-118	100.00	ATP synthase subunit delta, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1I621	1.1e-117	99.17	ATP synthase subunit delta, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A5A7T0I4	4.2e-101	86.25	ATP synthase subunit delta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3CIB5	4.2e-101	86.25	ATP synthase subunit delta, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350130...	[more]
A0A6J1I8U4	5.5e-101	86.67	ATP synthase subunit delta, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Carg27789 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09650.1	7.2e-69	61.92	ATP synthase delta-subunit gene	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000711	ATPase, OSCP/delta subunit	PRINTS	PR00125	ATPASEDELTA	coord: 206..224 score: 35.66 coord: 188..203 score: 36.41 coord: 126..137 score: 39.79 coord: 137..151 score: 26.5 coord: 57..76 score: 38.38
IPR000711	ATPase, OSCP/delta subunit	PFAM	PF00213	OSCP	coord: 58..231 e-value: 3.1E-42 score: 144.6
IPR000711	ATPase, OSCP/delta subunit	TIGRFAM	TIGR01145	TIGR01145	coord: 58..231 e-value: 3.3E-37 score: 126.3
IPR000711	ATPase, OSCP/delta subunit	PANTHER	PTHR11910	ATP SYNTHASE DELTA CHAIN	coord: 26..239
IPR000711	ATPase, OSCP/delta subunit	HAMAP	MF_01416	ATP_synth_delta_bact	coord: 53..233 score: 18.329048
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily	GENE3D	1.10.520.20		coord: 57..150 e-value: 8.8E-22 score: 79.5
IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily	SUPERFAMILY	47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase	coord: 55..157
None	No IPR available	PANTHER	PTHR11910:SF18	BNACNNG66500D PROTEIN	coord: 26..239
IPR020781	ATPase, OSCP/delta subunit, conserved site	PROSITE	PS00389	ATPASE_DELTA	coord: 190..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27789-RA	Carg27789-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0009409	response to cold
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0010319	stromule
cellular_component	GO:0016020	membrane
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism