Carg27777 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg27777
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S18
LocationCarg_Chr01: 7343382 .. 7347604 (+)
RNA-Seq ExpressionCarg27777
SyntenyCarg27777
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATACCATATAAAATCCTGCCCCACTCATCGGCCTGCGATCTCTTCTCGTTTTTTCCTGCCTCTGCTGCCGCCGGGAATTCTTTGAACTCCTTGCTTCTATCTACGTTCGCCATGGTAACTACAGTTTCTTGTTTGCTCTGTTTCCACTTGTTCTCTCCTATTGCCGGTTCTTGAATGCCCTAAATTATTCGTTAGGTTTTTACAATGGACTGTGTTGATTTGATTTTGTCTCCTTCTTTCTGTATCTAGTCGCTGGTAGCAAATGAGGATTTTCAGCACATTCTTCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATTATGTTTGCTCTCACTTCAATCAAAGGTATTGGAAGGCGTTTGGCTAACATCGTCTGCAAGAAGGCTGATGTCGACATGAACAAGAGGTATTCTTTTCCCTACTTTTCGCTGTTTTTTTTTTTTTTTTTCATTCATTGCGGTTTATCGTTTATCTAGTTTGGGAGAAAAATTCGAGAATTAGGAGTATTACAAGGGTTTTGTCCGTTGTGTTTAATTTTGCCTCTTAGATCGATGCTACGCATTGAGGTTTCCGTTCCTAATTATTTATCAAGAAGTTTATGCTGAAGTTTTACATAAAAGAACAATTGATGTTGGGTATTCCGGAAAAAGTAGGAGTTTAACATGGGCACGGCTGATGATGAAATCGATGAAAGACTTGAGATTTTGAAGGAGTTTATCGTTGTTAGAATAACAATTACTGCAGTAACAAGGGTCAATTATTCTGTGATTTAGGTTTTTTTTTTGAAGTTGGTTCATGTCTGTAGATGGAATATGAATGTAGGATGTATGATTTGTTGGAATAACAAGTAAACATACAATAAGAACAAAAGTTGGAGTACAGGACCTTTGGATCCATGCATTTACAAAAACCTTTGCCAGGATAAGGATATCAAAATAATAGTGAACTTTTTTGACAGCTGGGTCTAGTAGACAAAGAAAAAAAGCCCTACAATTCTGGTTTGAGTTTTAAGAGCGAGGAAAAAAGAACAGAAGTATGAACTGCAACTGGATTTTTGGTTGCTTGGATTTATCTTCTGCTGCTTCTTTCTTCATTTTCTTTGATATAATTTGCCACAATATATTCCTCATGTTTATCTGGGTTTGATATGTGACCAATGTATGCACAGATGGCTTCAATTTTTTTTCTTTTAATGAATATTGGAATGAAACTATTTCTTCTATCTAATAACCAAATGGAAAGTACTCAAATTCAAACTCACATGCCCCACATTGTATGACCAAAATGAGTAAATACCATCACGTGAGCTTTCAACTTAATCTGAAAATCATATTAAAAACTATTACAAACGGAGAGAGAATAAACCAAGTTCCTCTAGTTCTCTGAATATAATGAAACCAAAATCTTAATGAAAACTTAATAGTAACTATCATATAATCATCAAATCATGACTAAAGCCAAACACCGTGCTGTGGCCCCCTTTGACATTGATTGAAATGTTTTGGTGAAAATTCAGAATTGTTCCTTCGCGATAGACCTATAGAAATTTTTGCAGCATCTGAAACGCCTGTTTATCGAGAACCTGTTTTCCTGATGACCTCTATCAACTCTTCTAGACATTTGGAAAAAAACTGATAACTGTAAGAAGATTTGAATTTGACCCGCTTTTTTTGCTGAGATCCATTCACTAAGGCTTTACGAAGCTACGTTTGTAGCTTAGCCATTGTATTTTTCTCCTGTTATAGAGAGAAACAGCTGCAATCTTATTGTTGGTATTTGAATACCTCGGGAGAGACTGGGTAGGAGCAATTAACTCACATTGGTAGCTTGCTGCAGTAGTTCATTTAGGAAGTTCGTGTATGGGTTACTTTTTTAGCACCTCTCACTTAGTAGTTGTTTATCTTTTCATTCTTTTTTTTTTTTTTTTTATGTATTAAATGACCTCAAGTGAATTTGGTTTTATTTTGGGAGGGGCAGGAGACTTCATTTTTAGAAGATTGGTGAGTGTGTGAGAAGCCCCTTCGTGTGCTGTACCTTCTTTTGTATCATCTTTTGAGTAAGGGTTGTATTATGTAGTTTTCATTTCTGTCTGACCCCTCTTCCTCTTTATTGTTAGGTTTTAGTCTCCATCTTTCCAATAGAGATACTATTTTATGTGTTAGGTCTCCTTTCTGTTATCCTTGATCTGCATGTGCTCCGAGAGGGAAGGGATTTTAGGGTTTGTTGTTGTTCCCGCAGTTGTGCATTCTGTATAATTGTAAGGATGAGGATCTTATTCCTTGACGTGGGGTTGTCAGTTTGTTTAAACCCTTTGGGCTAGGTGGTTGGTCCTCCTTCGGTTTAAGTTTGGCATGGAATGATGACTGTTTTGCTTTGATCAAGGAGGTGCTCTTGGGGTTGCCTTTTCGTGAGAGTGGCACTATTTTGTGGCACACCAATTTCTTTTCTATCTTGTAGGGGATTGAGGATGAAAGAAATAATATAATTTTTAAAGATTTGGAGCAGTCTTGTGATGAGTTTGGTGGTAGTTAGGTTTAAAGTCACTTTGTGGGTGTTAGTCCCTATGCGTTTTTGTAGTTATGGTTTTGGATTGATTTTGTTTGATTGAAGTTCCTTTCTGTAGCTTTCGGGATGTTTGTTTGACTTGTTTTTGTTTCTCTTATATATTCTTTCATTTTTCTCAATGAAAGCTTGGTTTCTCACCCAAAAAAAAAAAAATATTGGTTTTGAATTATTCATTTTATTGTCACCCTAGAAGACGATACAATTCAGAGTTTGGGGTAGAACTCAAGGTGGCTTGTCTGTCTTACCTTTTTGTTTTTATTTGTTATTTTTACTACCAGGGCTGGTGAACTAACTGCTGCCGAGTTGGACAATCTCATGGTGATTGTTGCCAATCCACGACAATTTAAAGTTCCTGACTGGTTTTTGAATCGGCAAAAGGACTACAAGGATGGGAAATATTCTCAAGTGGTTTCTAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATCAGGTAACTTCCTCTTTTTGGTGTCATATCAACACGCATAGTTTTTTGGTTAACTGCTCTTTTTAAGTGTTTGTCTTCTTAGGTATTAATCTTGTTTGTTTGACATTATAACTATTAAATCAGCTTTTGAAGAAAAAAAGAACAGCAGAAAAAATCTAAATTGTGCTGTTTTCATGTATTTCCTATAAAGTTTATTGTTGGTAATCGATATGTAATGATTAATTATCTTTTACGTTAGTTTTGATCTGTATTCTGCTGTATCTTTTGAATTAATATATTATAGATAAATGAGAGCAGAACATATCTTTCAAAATCATTTTCAGAAATAAAAAACAATAAAAAGAAAAGCAGTTATAAAGGGTCACTCAAACATCCCCCATGTCTGTTGGTGCCATATTCAACATGCATGCTATTTTAGCTGTGATGTACTTAAAAGGTCTGTAAAACCTAATGTTTTCACTGATTAGACACTGCCTTAACCATTTTGTGCCACTAATTTGTGAATCCAGAAGGGGCATATATGTTGGAAATGAAACCTATGATCCGTCTCTTTGTTGAATCTGATATATTCCTGAAGTGTTTCTATTATTAATGGCTGATGTATTTGGGATAATTCCAGTCCACTAATCTTCGATACATCGAATGCAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCCGAGTTCGTGGTCAGCACACTAAAACCACTGGTCGCCGAGGAAAAACTGTTGGTGTCTCCAAGAAACGTTGATATTTTTTTTCCATGTTTTCAGGAGTTTAGTATGTGGGTGGGCAAATCAGTATCTTTGGCCTGTTAGTTGAACATTTGAGCTGGTCCTCCTTTTTGGAAGTTTTGGTTGGGATGGTATTTTTGTTTAATTTACCCCTCCCCCTTTTTTTTTACTGTGATTTTACGCTAGAAAAGGAAGGTTACAGTGGCACATGCAAAGCTTATTGATGTTTGAAAGATTTTATTTATAGGATTCTTGTTTGGTCCAATTAGGTTTTGCTTGAAATCAGGTGCAGTTTAGTTGAGTTGAGAAATCATCCATCAATTTGTCGAATGTATATTGCGAATATTTTTGGAAATTTTTATTTGGTATTCAGAAAAATGTTATCTCGTTGATTAAAATGTGTTTCTATGTTCCTTTTCATTTATTTTGTTGTCTGTTTTATGTGATTTTAC

mRNA sequence

GATACCATATAAAATCCTGCCCCACTCATCGGCCTGCGATCTCTTCTCGTTTTTTCCTGCCTCTGCTGCCGCCGGGAATTCTTTGAACTCCTTGCTTCTATCTACGTTCGCCATGTCGCTGGTAGCAAATGAGGATTTTCAGCACATTCTTCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATTATGTTTGCTCTCACTTCAATCAAAGGTATTGGAAGGCGTTTGGCTAACATCGTCTGCAAGAAGGCTGATGTCGACATGAACAAGAGGGCTGGTGAACTAACTGCTGCCGAGTTGGACAATCTCATGGTGATTGTTGCCAATCCACGACAATTTAAAGTTCCTGACTGGTTTTTGAATCGGCAAAAGGACTACAAGGATGGGAAATATTCTCAAGTGGTTTCTAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATCAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCCGAGTTCGTGGTCAGCACACTAAAACCACTGGTCGCCGAGGAAAAACTGTTGGTGTCTCCAAGAAACGTTGATATTTTTTTTCCATGTTTTCAGGAGTTTAGTATGTGGGTGGGCAAATCAGTATCTTTGGCCTGTTAGTTGAACATTTGAGCTGGTCCTCCTTTTTGGAAGTTTTGGTTGGGATGGTATTTTTGTTTAATTTACCCCTCCCCCTTTTTTTTTACTGTGATTTTACGCTAGAAAAGGAAGGTTACAGTGGCACATGCAAAGCTTATTGATGTTTGAAAGATTTTATTTATAGGATTCTTGTTTGGTCCAATTAGGTTTTGCTTGAAATCAGGTGCAGTTTAGTTGAGTTGAGAAATCATCCATCAATTTGTCGAATGTATATTGCGAATATTTTTGGAAATTTTTATTTGGTATTCAGAAAAATGTTATCTCGTTGATTAAAATGTGTTTCTATGTTCCTTTTCATTTATTTTGTTGTCTGTTTTATGTGATTTTAC

Coding sequence (CDS)

ATGTCGCTGGTAGCAAATGAGGATTTTCAGCACATTCTTCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATTATGTTTGCTCTCACTTCAATCAAAGGTATTGGAAGGCGTTTGGCTAACATCGTCTGCAAGAAGGCTGATGTCGACATGAACAAGAGGGCTGGTGAACTAACTGCTGCCGAGTTGGACAATCTCATGGTGATTGTTGCCAATCCACGACAATTTAAAGTTCCTGACTGGTTTTTGAATCGGCAAAAGGACTACAAGGATGGGAAATATTCTCAAGTGGTTTCTAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATCAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCCGAGTTCGTGGTCAGCACACTAAAACCACTGGTCGCCGAGGAAAAACTGTTGGTGTCTCCAAGAAACGTTGA

Protein sequence

MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELTAAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Homology
[Close]
BLAST of Carg27777 vs. NCBI nr
Match: XP_022926292.1 (40S ribosomal protein S18 [Cucurbita moschata] >XP_022981641.1 40S ribosomal protein S18 [Cucurbita maxima] >XP_023523328.1 40S ribosomal protein S18 [Cucurbita pepo subsp. pepo] >KAG6607633.1 40S ribosomal protein S18, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037236.1 40S ribosomal protein S18 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.1 bits (775), Expect = 1.3e-78
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Carg27777 vs. NCBI nr
Match: XP_022956233.1 (40S ribosomal protein S18-like [Cucurbita moschata])

HSP 1 Score: 301.2 bits (770), Expect = 5.0e-78
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGELT
Sbjct: 27  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 86

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 87  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 146

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 147 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 178

[Close]
BLAST of Carg27777 vs. NCBI nr
Match: KAG6578871.1 (40S ribosomal protein S18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 301.2 bits (770), Expect = 5.0e-78
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGELT
Sbjct: 86  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 145

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 146 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 205

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 206 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 237

[Close]
BLAST of Carg27777 vs. NCBI nr
Match: KAG6602197.1 (Protein GIGANTEA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 301.2 bits (770), Expect = 5.0e-78
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1    MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
            MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGELT
Sbjct: 1318 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 1377

Query: 61   AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
            AAELDNLMV+VANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 1378 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 1437

Query: 121  RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
            RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 1438 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 1469

[Close]
BLAST of Carg27777 vs. NCBI nr
Match: XP_002524340.1 (40S ribosomal protein S18 [Ricinus communis] >XP_021602211.1 40S ribosomal protein S18 [Manihot esculenta] >XP_021689482.1 40S ribosomal protein S18 [Hevea brasiliensis] >XP_031251561.1 40S ribosomal protein S18-like [Pistacia vera] >XP_031258282.1 40S ribosomal protein S18-like [Pistacia vera] >EEF38080.1 40S ribosomal protein S18, putative [Ricinus communis] >OAY58510.1 hypothetical protein MANES_02G183300v8 [Manihot esculenta])

HSP 1 Score: 301.2 bits (770), Expect = 5.0e-78
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVIVANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Carg27777 vs. ExPASy Swiss-Prot
Match: P34788 (40S ribosomal protein S18 OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 9.5e-80
Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM IVANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Carg27777 vs. ExPASy Swiss-Prot
Match: Q8ISP0 (40S ribosomal protein S18 OS=Branchiostoma belcheri OX=7741 GN=RPS18 PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.7e-65
Identity = 118/152 (77.63%), Postives = 140/152 (92.11%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +NIVCKKAD+D++KRAGEL+
Sbjct: 1   MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELS 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ L+ I+ NPRQ+K+PDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR H
Sbjct: 61  DEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]
BLAST of Carg27777 vs. ExPASy Swiss-Prot
Match: Q8IT98 (40S ribosomal protein S18 OS=Argopecten irradians OX=31199 GN=RPS18 PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.9e-64
Identity = 115/152 (75.66%), Postives = 140/152 (92.11%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           M+L+  E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAGEL+
Sbjct: 1   MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELS 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ I++NPRQ+K+P+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR H
Sbjct: 61  EDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRG+TVGV+KK+
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGRTVGVAKKK 152

[Close]
BLAST of Carg27777 vs. ExPASy Swiss-Prot
Match: Q8JGS9 (40S ribosomal protein S18 OS=Danio rerio OX=7955 GN=rps18 PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-62
Identity = 113/152 (74.34%), Postives = 137/152 (90.13%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAGELT
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ I+ NPRQ+K+PDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR H
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]
BLAST of Carg27777 vs. ExPASy Swiss-Prot
Match: Q90YQ5 (40S ribosomal protein S18 OS=Ictalurus punctatus OX=7998 GN=rps18 PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 4.0e-62
Identity = 112/152 (73.68%), Postives = 137/152 (90.13%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAGELT
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ I+ NPRQ+K+PDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR H
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]
BLAST of Carg27777 vs. ExPASy TrEMBL
Match: A0A6J1IX44 (40S ribosomal protein S18 OS=Cucurbita maxima OX=3661 GN=LOC111480700 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.4e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Carg27777 vs. ExPASy TrEMBL
Match: A0A6J1EE49 (40S ribosomal protein S18 OS=Cucurbita moschata OX=3662 GN=LOC111433472 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.4e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Carg27777 vs. ExPASy TrEMBL
Match: A0A6J1IJ52 (40S ribosomal protein S18-like OS=Cucurbita maxima OX=3661 GN=LOC111476758 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.4e-78
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Carg27777 vs. ExPASy TrEMBL
Match: A0A6J1FP38 (40S ribosomal protein S18-like OS=Cucurbita moschata OX=3662 GN=LOC111445638 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.4e-78
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Carg27777 vs. ExPASy TrEMBL
Match: B9SEC1 (40S ribosomal protein S18, putative OS=Ricinus communis OX=3988 GN=RCOM_0961900 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.4e-78
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVIVANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Carg27777 vs. TAIR 10
Match: AT1G22780.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 297.4 bits (760), Expect = 6.7e-81
Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM IVANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Carg27777 vs. TAIR 10
Match: AT1G34030.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 297.4 bits (760), Expect = 6.7e-81
Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM IVANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Carg27777 vs. TAIR 10
Match: AT4G09800.1 (S18 ribosomal protein )

HSP 1 Score: 297.4 bits (760), Expect = 6.7e-81
Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM IVANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

The following BLAST results are available for this feature:
BLAST of Carg27777 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022926292.11.3e-78100.0040S ribosomal protein S18 [Cucurbita moschata] >XP_022981641.1 40S ribosomal pro... [more]
XP_022956233.15.0e-7898.0340S ribosomal protein S18-like [Cucurbita moschata][more]
KAG6578871.15.0e-7898.0340S ribosomal protein S18, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6602197.15.0e-7898.03Protein GIGANTEA, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_002524340.15.0e-7898.6840S ribosomal protein S18 [Ricinus communis] >XP_021602211.1 40S ribosomal prote... [more]
BLAST of Carg27777 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P347889.5e-8096.7140S ribosomal protein S18 OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1[more]
Q8ISP01.7e-6577.6340S ribosomal protein S18 OS=Branchiostoma belcheri OX=7741 GN=RPS18 PE=2 SV=1[more]
Q8IT981.9e-6475.6640S ribosomal protein S18 OS=Argopecten irradians OX=31199 GN=RPS18 PE=2 SV=1[more]
Q8JGS91.1e-6274.3440S ribosomal protein S18 OS=Danio rerio OX=7955 GN=rps18 PE=2 SV=1[more]
Q90YQ54.0e-6273.6840S ribosomal protein S18 OS=Ictalurus punctatus OX=7998 GN=rps18 PE=2 SV=1[more]
BLAST of Carg27777 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IX446.4e-79100.0040S ribosomal protein S18 OS=Cucurbita maxima OX=3661 GN=LOC111480700 PE=3 SV=1[more]
A0A6J1EE496.4e-79100.0040S ribosomal protein S18 OS=Cucurbita moschata OX=3662 GN=LOC111433472 PE=3 SV=... [more]
A0A6J1IJ522.4e-7898.0340S ribosomal protein S18-like OS=Cucurbita maxima OX=3661 GN=LOC111476758 PE=3 ... [more]
A0A6J1FP382.4e-7898.0340S ribosomal protein S18-like OS=Cucurbita moschata OX=3662 GN=LOC111445638 PE=... [more]
B9SEC12.4e-7898.6840S ribosomal protein S18, putative OS=Ricinus communis OX=3988 GN=RCOM_0961900 ... [more]
BLAST of Carg27777 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G22780.16.7e-8196.71Ribosomal protein S13/S18 family [more]
AT1G34030.16.7e-8196.71Ribosomal protein S13/S18 family [more]
AT4G09800.16.7e-8196.71S18 ribosomal protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001892Ribosomal protein S13PIRSFPIRSF002134RPS13p_RPS13a_RPS18e_RPS13ocoord: 4..152
e-value: 3.3E-40
score: 135.0
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 14..142
e-value: 2.8E-57
score: 192.6
IPR001892Ribosomal protein S13HAMAPMF_01315Ribosomal_S13_S18coord: 12..152
score: 22.785706
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 15..145
score: 34.975204
NoneNo IPR availableGENE3D1.10.8.50coord: 1..80
e-value: 1.7E-35
score: 123.1
NoneNo IPR availablePANTHERPTHR10871:SF340S RIBOSOMAL PROTEIN S18-RELATEDcoord: 1..152
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 1..152
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.1030s ribosomal protein s13, domain 2coord: 92..142
e-value: 1.4E-28
score: 100.4
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 121..134
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 13..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27777-RACarg27777-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005829 cytosol
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003676 nucleic acid binding