Carg27703 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27703
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S12
Location	Carg_Chr17: 7152796 .. 7153831 (+)
RNA-Seq Expression	Carg27703
Synteny	Carg27703

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAATCTTCTCTACGAACATCCTCTCTCAGTCCTGCCGCCGCCGCAATTTCTCAATTCTCTGGTAAGCTTTTCTCTCTCTCTCTCTCTCAATCTCCGGTTAGCAGTTCTCGTTCTCCTCCTGGTTAGCCATTGTTATCCCTTCCTTGGTGTCCACGAAAACAAAGATCGTCTCTATTAATCCCTCTCGTCCTCGGATTTCGAACTCGCAGCTGTTTATTGATCTCCCACTATCTTGATTATCAAAACTGTAAAACCAAACCCAGTAGACCGAACGGATTAGTAGTTTACTCTATATGCCTTCGTTCTTGATTCAAACTGTCTGTTCTGGAGTTCCTCATCTGTTTTGTCTAATTATTATTATTATTATTTTGCAGTGTTTTTCTGCAAAAGAAGGAGAAACAACTTCTAATCAAGAAGAAAGATGTCAGCGTGAGTGGAAACTTGTTTATTACAGTTTCTAACTTTCCTGTTAATTGCCAATTTTTGTGTTGTACCTGGTGGTTTCCTTTTCAATATCTTGGATATAGACGATGCCTTGGTTTTTTTAGAAGTAGAATCTGCTGCTTGGAATCGATTAATTTGGTCTTAGGTCATATCCAATTCAAAGTTTGGAAGTTCAATATATATATACACACGTTGATCTGTATTAGTTCTTTGCATGGGATGAAGAGTTACTGAGAATTGAAGATCCCTTTATTACATGTTCAATGGTACTACGGAATTTGAGGATTTTTTGCGTAAATGTCTATTCAATTGCCTTCTATTGTTGACAGTAGCATGCCATAGTGGGGTTTTTTAATCCCTTTTAACATGATTTCTTTTGCAGTGATGAAGTTGCAGTTGTGGCTGAGGCTCCGGCCCCAGCTCTAGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTGGCTCACGGCGGGCTTGTTCGAGGCCTCCATGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAAAGATTGCAAAACCAGCCAGACTATGTTAA

mRNA sequence

CCTAATCTTCTCTACGAACATCCTCTCTCAGTCCTGCCGCCGCCGCAATTTCTCAATTCTCTGTGTTTTTCTGCAAAAGAAGGAGAAACAACTTCTAATCAAGAAGAAAGATGTCAGCTGATGAAGTTGCAGTTGTGGCTGAGGCTCCGGCCCCAGCTCTAGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTGGCTCACGGCGGGCTTGTTCGAGGCCTCCATGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAAAGATTGCAAAACCAGCCAGACTATGTTAA

Coding sequence (CDS)

ATGTCAGCTGATGAAGTTGCAGTTGTGGCTGAGGCTCCGGCCCCAGCTCTAGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTGGCTCACGGCGGGCTTGTTCGAGGCCTCCATGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAAAGATTGCAAAACCAGCCAGACTATGTTAA

Protein sequence

MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGKIAKPARLC

Homology

[Close]

BLAST of Carg27703 vs. NCBI nr
Match: KAG7014176.1 (40S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.0 bits (341), Expect = 1.3e-28
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
          MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61 LGKIAKPARLC 72
          LGKIAKPARLC
Sbjct: 61 LGKIAKPARLC 71

[Close]

BLAST of Carg27703 vs. NCBI nr
Match: XP_022954225.1 (40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosomal protein S12-like [Cucurbita moschata] >KAG6575626.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014180.1 40S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
          MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61 LGK 64
          LG+
Sbjct: 61 LGE 63

[Close]

BLAST of Carg27703 vs. NCBI nr
Match: XP_008461174.1 (PREDICTED: 40S ribosomal protein S12 [Cucumis melo] >KAA0058716.1 40S ribosomal protein S12 [Cucumis melo var. makuwa] >TYK10523.1 40S ribosomal protein S12 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 2.8e-23
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
          MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1  MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61 LGK 64
          LG+
Sbjct: 61 LGE 63

[Close]

BLAST of Carg27703 vs. NCBI nr
Match: XP_004135873.1 (40S ribosomal protein S12 [Cucumis sativus] >KGN45222.1 hypothetical protein Csa_015906 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 2.8e-23
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
          MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1  MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61 LGK 64
          LG+
Sbjct: 61 LGE 63

[Close]

BLAST of Carg27703 vs. NCBI nr
Match: XP_038896811.1 (40S ribosomal protein S12-like [Benincasa hispida])

HSP 1 Score: 117.5 bits (293), Expect = 4.8e-23
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
          MSADEVAVVAEAP PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1  MSADEVAVVAEAPVPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61 LGK 64
          LG+
Sbjct: 61 LGE 63

[Close]

BLAST of Carg27703 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.5e-15
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 6  VAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK 64
          V    EAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL +
Sbjct: 9  VVAPVEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAE 66

[Close]

BLAST of Carg27703 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-10
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 1  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
          MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1  MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61 QLCVLGK 64
          QLCVL +
Sbjct: 61 QLCVLAE 67

[Close]

BLAST of Carg27703 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-09
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 1  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
          MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1  MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61 QLCVLGK 64
          QL VL +
Sbjct: 61 QLVVLAE 67

[Close]

BLAST of Carg27703 vs. ExPASy Swiss-Prot
Match: P80455 (40S ribosomal protein S12 OS=Drosophila melanogaster OX=7227 GN=RpS12 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 5.0e-07
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 5  EVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGK 64
          +V V   + AP L   MDI TALQ VL+KSL   GLV G+H++ KA++K  A LC+L +
Sbjct: 3  DVDVDVPSAAPVLDGAMDINTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAE 61

[Close]

BLAST of Carg27703 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-06
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 16 ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVL 62
          A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL
Sbjct: 7  AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVL 52

[Close]

BLAST of Carg27703 vs. ExPASy TrEMBL
Match: A0A6J1GQC3 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.0e-24
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
          MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61 LGK 64
          LG+
Sbjct: 61 LGE 63

[Close]

BLAST of Carg27703 vs. ExPASy TrEMBL
Match: A0A5A7UX10 (40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001740 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-23
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
          MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1  MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61 LGK 64
          LG+
Sbjct: 61 LGE 63

[Close]

BLAST of Carg27703 vs. ExPASy TrEMBL
Match: A0A0A0KA08 (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-23
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
          MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1  MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61 LGK 64
          LG+
Sbjct: 61 LGE 63

[Close]

BLAST of Carg27703 vs. ExPASy TrEMBL
Match: A0A1S3CDM3 (40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103499835 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-23
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
          MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1  MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61 LGK 64
          LG+
Sbjct: 61 LGE 63

[Close]

BLAST of Carg27703 vs. ExPASy TrEMBL
Match: A0A6J1JWC7 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111488083 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
          MSADEV VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1  MSADEVTVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61 LGK 64
          LG+
Sbjct: 61 LGE 63

[Close]

BLAST of Carg27703 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-11
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 1  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
          MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1  MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61 QLCVLGK 64
          QLCVL +
Sbjct: 61 QLCVLAE 67

[Close]

BLAST of Carg27703 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-11
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 1  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
          MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1  MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61 QLCVLGK 64
          QLCVL +
Sbjct: 61 QLCVLAE 67

[Close]

BLAST of Carg27703 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-11
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 1  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
          MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1  MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61 QLCVLGK 64
          QLCVL +
Sbjct: 61 QLCVLAE 67

[Close]

BLAST of Carg27703 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-10
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 1  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
          MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1  MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61 QLCVLGK 64
          QL VL +
Sbjct: 61 QLVVLAE 67

[Close]

BLAST of Carg27703 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-10
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 1  MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
          MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1  MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61 QLCVLGK 64
          QL VL +
Sbjct: 61 QLVVLAE 67

The following BLAST results are available for this feature:

BLAST of Carg27703 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014176.1	1.3e-28	100.00	40S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022954225.1	1.6e-23	98.41	40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosoma...	[more]
XP_008461174.1	2.8e-23	96.83	PREDICTED: 40S ribosomal protein S12 [Cucumis melo] >KAA0058716.1 40S ribosomal ...	[more]
XP_004135873.1	2.8e-23	96.83	40S ribosomal protein S12 [Cucumis sativus] >KGN45222.1 hypothetical protein Csa...	[more]
XP_038896811.1	4.8e-23	96.83	40S ribosomal protein S12-like [Benincasa hispida]	[more]

BLAST of Carg27703 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHS0	8.5e-15	68.97	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
Q9SKZ3	1.7e-10	55.22	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
Q9S9P1	3.1e-09	55.22	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
P80455	5.0e-07	49.15	40S ribosomal protein S12 OS=Drosophila melanogaster OX=7227 GN=RpS12 PE=1 SV=2	[more]
Q76I81	1.1e-06	56.52	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]

BLAST of Carg27703 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQC3	8.0e-24	98.41	40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=...	[more]
A0A5A7UX10	1.4e-23	96.83	40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KA08	1.4e-23	96.83	40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1	[more]
A0A1S3CDM3	1.4e-23	96.83	40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103499835 PE=3 SV=1	[more]
A0A6J1JWC7	2.3e-23	96.83	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111488083 PE=3 SV=1	[more]

BLAST of Carg27703 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32060.1	1.2e-11	55.22	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.3	1.2e-11	55.22	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.2	1.2e-11	55.22	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.2	2.2e-10	55.22	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.1	2.2e-10	55.22	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 30..43 score: 54.55 coord: 44..60 score: 48.13
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 1..63
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 26..44
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 4..70 e-value: 2.4E-15 score: 58.0
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 18..67
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 26..67 e-value: 1.4E-7 score: 31.1
None	No IPR available	PANTHER	PTHR11843:SF23	40S RIBOSOMAL PROTEIN S12	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27703-RA	Carg27703-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome