Carg27691 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg27691
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr13: 3828397 .. 3830378 (-)
RNA-Seq ExpressionCarg27691
SyntenyCarg27691
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTCCTCCAGTAGCCATCGAGGATCCACCAAGGCTATCACCAATGGCGCCCAAGTCAGAAACACTTCTTCGGCCAATGACACCAAGACTTCCAGAAGGTTGGCCAGGCTGCAAAGGTTGACCAGGAGAAAGGTCATCTTCTCTTGACACTGAAGCAGTCTCGGTCAATGAAGCAGGTGCACCAGCCTACAACATACAGATAGTGGAAATTCAGGTTGTTGTTTAGATTATCATGTAATACAGTTTTTTTTATAGAACAAATGACTAAATCTAAAAAATTAGAGAACAAAGCTCTCATAAAGGTTATTTTAATATATGAAAATAACCCTTTTCTAATTGGATTTAGTAGAAGAAATGGAATAAACACATAAATCATTTTACATTCCAAGTAAAGGCAACAAAAATAATGTCCTGGGTGATACTGCATTAGACCTCCAACTCCATATTCTGAAAAGCAGTTGGTAACTTAGATGCGACTTACAATGATATCAAAGATATAATCGAGAAAAAGATAGTCGTATTGAGTTATTAGAGTGTGTTAGTGCAGTGTGGTAGATACATACAGAATGTGAGAGGTGGAGACAATTGGCAATTTTATATTTTCCGGGCTGGAAGGTTCCATCCAATTTCCTCAAATTAATTTACATATTGTAGTTATTTTCTTGTTCTTCAACTTTTCAGTACAACTCCAGTTTCAAGCATTTGGTTTCTATCAGATGAAAACGAAGAGAACATTTGTTCTGAAAGAGTGAAAGCCTACATGCTTACCAACTTGAATCCTAATAGGTGCATCATCAGTAAAATAGGACCTCGAGATTATACTTCCGTTCATGTGATCAAGTTATCATGTTTTAGAAACTTTTTTTATGCCACTTTCAGTTAGTCATGCGTCTTGGTCAGAAGGTGTCAGCAAATCTTTCCTCTCCTTGTTGAGTCTCCACAAATGAATTCCACTTAGTGTAATTTCCTCTCTAATCAACAATGAATTCCACTTGTTGAGTCTCCACAACTTTTCAAGCTCACAAATGAGGGGATGTTAAAGTAAATATAATTAAATTTACTGTAACTCATCAACTAAAGCTTTTGGGTTTACCGACGATTTAACAATGAATAAAACCCTAAAACTACAACTCTAACCCTAGACCCTAGCTGCTGTCCCTAGTCACCGTTGCCCACAAGACTCCAATTGCAAACTCCCTTCAATACTCGATGTTGCCTGATTTGCTCTACATTGACTTCCCTAGTATAGTTCATCATCAGACCCCAACTACACAAGGCACGTCATATCCAGTGGGTTGTACTCCCTACAATTTGCCTCTCATCTGTTCACATCATCCTCAATCCATACAGTCCGTTAGCTCCTCACCGTCATTACTCCTTCACCATATGCAGAGTGTGTCACCATCAATTTGGTTCTCAATTTTAGAGGTATTTCTCGATTGTGGGTATTCTACGTTTCTAATTTGGTTTGTGCTTTGATTCTCAATCAATTTTGTGGATATCTGATTGCTTACGTCCTCTTTTAGTTGTTGGATTCTCTGAATTAAGACAATTAACCTCAACCCAAGCTATTCTTCAGCAATAATATCAGAAAATAAAGTCATCTATTGCCAAAGTTTCGGATAATCATATCCATCCTAATAGTCCTACTGTCCAAGTTACTACCATTCGGCTTAATGAAGATAACTTTTTGCGTTGGTCCCAAAATGTGTGGATGTATATTCATGAACAGAAAGATTGACTATCTTACTGGAGACAAAAAAATTCTCACTCAAGATGATCCTTCTTTTGTCTGTTAGGATGCTGAAAACTTAATGGTTATAACATGGCTCATGAATTCTATAATGCAGGAGATGAAGCCGTGACTATGTGTTACACTACTCCACATCAATTATGGGATAGTGTCACCTGAGGTATTCAGAATTAGGTATAAATCACAAGTCTTTGAGCTGAATCTCAAACTGAGTGACAATCGATAA

mRNA sequence

ATGCATTCCTCCAGTAGCCATCGAGGATCCACCAAGGCTATCACCAATGGCGCCCAAGTCAGAAACACTTCTTCGGCCAATGACACCAAGACTTCCAGAAGGTTGGCCAGGCTGCAAAGTACAACTCCAGTTTCAAGCATTTGGTTTCTATCAGATGAAAACGAAGAGAACATTTGTTCTGAAAGAGTGAAAGCCTACATGCTTACCAACTTGAATCCTAATAGGTGCATCATCAGTAAAATAGGACCTCGAGATTATACTTCCGTTCATAAAATAAAGTCATCTATTGCCAAAGTTTCGGATAATCATATCCATCCTAATAGTCCTACTGTCCAAGTTACTACCATTCGGCTTAATGAAGATAACTTTTTGCTGTCACCTGAGGTATTCAGAATTAGGTATAAATCACAAGTCTTTGAGCTGAATCTCAAACTGAGTGACAATCGATAA

Coding sequence (CDS)

ATGCATTCCTCCAGTAGCCATCGAGGATCCACCAAGGCTATCACCAATGGCGCCCAAGTCAGAAACACTTCTTCGGCCAATGACACCAAGACTTCCAGAAGGTTGGCCAGGCTGCAAAGTACAACTCCAGTTTCAAGCATTTGGTTTCTATCAGATGAAAACGAAGAGAACATTTGTTCTGAAAGAGTGAAAGCCTACATGCTTACCAACTTGAATCCTAATAGGTGCATCATCAGTAAAATAGGACCTCGAGATTATACTTCCGTTCATAAAATAAAGTCATCTATTGCCAAAGTTTCGGATAATCATATCCATCCTAATAGTCCTACTGTCCAAGTTACTACCATTCGGCTTAATGAAGATAACTTTTTGCTGTCACCTGAGGTATTCAGAATTAGGTATAAATCACAAGTCTTTGAGCTGAATCTCAAACTGAGTGACAATCGATAA

Protein sequence

MHSSSSHRGSTKAITNGAQVRNTSSANDTKTSRRLARLQSTTPVSSIWFLSDENEENICSERVKAYMLTNLNPNRCIISKIGPRDYTSVHKIKSSIAKVSDNHIHPNSPTVQVTTIRLNEDNFLLSPEVFRIRYKSQVFELNLKLSDNR
Homology
[Close]
BLAST of Carg27691 vs. NCBI nr
Match: KAG7019319.1 (hypothetical protein SDJN02_18279, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288.5 bits (737), Expect = 3.3e-74
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MHSSSSHRGSTKAITNGAQVRNTSSANDTKTSRRLARLQSTTPVSSIWFLSDENEENICS 60
           MHSSSSHRGSTKAITNGAQVRNTSSANDTKTSRRLARLQSTTPVSSIWFLSDENEENICS
Sbjct: 1   MHSSSSHRGSTKAITNGAQVRNTSSANDTKTSRRLARLQSTTPVSSIWFLSDENEENICS 60

Query: 61  ERVKAYMLTNLNPNRCIISKIGPRDYTSVHKIKSSIAKVSDNHIHPNSPTVQVTTIRLNE 120
           ERVKAYMLTNLNPNRCIISKIGPRDYTSVHKIKSSIAKVSDNHIHPNSPTVQVTTIRLNE
Sbjct: 61  ERVKAYMLTNLNPNRCIISKIGPRDYTSVHKIKSSIAKVSDNHIHPNSPTVQVTTIRLNE 120

Query: 121 DNFLLSPEVFRIRYKSQVFELNLKLSDNR 150
           DNFLLSPEVFRIRYKSQVFELNLKLSDNR
Sbjct: 121 DNFLLSPEVFRIRYKSQVFELNLKLSDNR 149

The following BLAST results are available for this feature:
BLAST of Carg27691 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019319.13.3e-74100.00hypothetical protein SDJN02_18279, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg27691 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg27691 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg27691 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27691-RACarg27691-RAmRNA